Wall clock time and date at job start Wed Apr 1 2020 00:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35896 * 117.00028 * 2 1 4 4 C 1.38753 * 120.05659 * 0.20076 * 3 2 1 5 5 C 1.38125 * 119.94256 * 180.23299 * 4 3 2 6 6 C 1.38281 * 120.05649 * 359.82254 * 5 4 3 7 7 C 1.38241 * 120.11286 * 359.97010 * 6 5 4 8 8 C 1.50704 * 119.97509 * 180.02562 * 7 6 5 9 9 H 1.08999 * 109.47439 * 199.98110 * 8 7 6 10 10 C 1.52995 * 109.46849 * 79.97845 * 8 7 6 11 11 N 1.46499 * 109.47114 * 319.98122 * 8 7 6 12 12 C 1.34774 * 120.00241 * 205.00081 * 11 8 7 13 13 O 1.21572 * 119.99706 * 359.97438 * 12 11 8 14 14 N 1.34776 * 120.00045 * 179.97438 * 12 11 8 15 15 C 1.38728 * 119.99610 * 175.56298 * 14 12 11 16 16 C 1.38837 * 120.00202 * 59.01412 * 15 14 12 17 17 H 1.08005 * 120.00049 * 204.34475 * 16 15 14 18 18 C 1.40924 * 120.00287 * 24.34320 * 16 15 14 19 19 N 1.30298 * 119.99492 * 6.58560 * 18 16 15 20 20 Si 1.86797 * 120.00359 * 186.58238 * 18 16 15 21 21 H 1.48498 * 109.46881 * 90.00225 * 20 18 16 22 22 H 1.48498 * 109.47350 * 210.00117 * 20 18 16 23 23 H 1.48501 * 109.47010 * 330.00269 * 20 18 16 24 24 C 1.41077 * 119.99801 * 239.00954 * 15 14 12 25 25 C 1.43197 * 119.99684 * 185.31062 * 24 15 14 26 26 N 9.73276 * 140.24299 * 35.70200 * 6 1 2 27 27 C 1.43195 * 119.99804 * 5.31271 * 24 15 14 28 28 N 9.48983 * 166.58614 * 154.15191 * 3 1 2 29 29 C 1.38170 * 120.05723 * 359.97438 * 7 6 5 30 30 H 1.08997 * 109.47298 * 59.99854 * 1 2 3 31 31 H 1.09003 * 109.47224 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47352 * 300.00355 * 1 2 3 33 33 H 1.07999 * 120.02915 * 0.03256 * 4 3 2 34 34 H 1.08003 * 119.97005 * 179.79481 * 5 4 3 35 35 H 1.08006 * 119.94799 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.47498 * 299.99821 * 10 8 7 37 37 H 1.08999 * 109.47256 * 60.00244 * 10 8 7 38 38 H 1.09006 * 109.46943 * 180.02562 * 10 8 7 39 39 H 0.97002 * 119.99942 * 24.99376 * 11 8 7 40 40 H 0.96992 * 120.00230 * 355.56268 * 14 12 11 41 41 H 0.96999 * 119.99804 * 184.98905 * 19 18 16 42 42 H 1.07994 * 120.03191 * 179.97438 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2108 0.0000 4 6 1.2914 2.3753 0.0042 5 6 1.9209 3.6047 -0.0007 6 6 3.3019 3.6757 -0.0060 7 6 4.0559 2.5171 -0.0059 8 6 5.5608 2.5980 -0.0112 9 1 5.9744 1.6524 -0.3615 10 6 6.0613 2.8794 1.4070 11 7 5.9886 3.6785 -0.9033 12 6 7.2122 3.6424 -1.4669 13 8 7.9612 2.7134 -1.2347 14 7 7.6055 4.6361 -2.2881 15 6 8.8968 4.6468 -2.7950 16 6 9.3519 3.5798 -3.5580 17 1 10.4105 3.3761 -3.6244 18 6 8.4326 2.7626 -4.2459 19 7 7.1696 3.0818 -4.2717 20 14 9.0248 1.2220 -5.1206 21 1 8.9698 0.0698 -4.1854 22 1 8.1524 0.9513 -6.2914 23 1 10.4229 1.4202 -5.5803 24 6 9.7475 5.7418 -2.5354 25 6 11.0387 5.8070 -3.1510 26 7 12.0622 5.8581 -3.6420 27 6 9.3198 6.7880 -1.6562 28 7 8.9809 7.6172 -0.9598 29 6 3.4311 1.2847 0.0001 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 0.2128 2.3204 0.0080 34 1 1.3340 4.5114 -0.0007 35 1 3.7923 4.6380 -0.0103 36 1 5.6478 3.8251 1.7573 37 1 5.7430 2.0755 2.0708 38 1 7.1497 2.9384 1.4031 39 1 5.3910 4.4198 -1.0884 40 1 6.9858 5.3438 -2.5245 41 1 6.5264 2.4831 -4.6824 42 1 4.0206 0.3798 -0.0002 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192900165.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:06:22 Heat of formation + Delta-G solvation = 1.610689 kcal Electronic energy + Delta-G solvation = -28359.928475 eV Core-core repulsion = 24304.971543 eV Total energy + Delta-G solvation = -4054.956932 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.46349 -40.88057 -39.04915 -38.03402 -36.78043 -36.50894 -35.85822 -34.87159 -32.96946 -31.78924 -30.96663 -29.88548 -28.73284 -28.09608 -25.09341 -23.69480 -23.52708 -22.17993 -21.31955 -20.53582 -19.60490 -18.99338 -18.66124 -17.75666 -17.35136 -17.01654 -16.78719 -16.62185 -16.08939 -15.75428 -15.56990 -15.22330 -14.83351 -14.59483 -14.48135 -14.34351 -14.26903 -14.08878 -13.88167 -13.47184 -13.40967 -13.34864 -13.26749 -13.12905 -13.10649 -12.91267 -12.70586 -12.62436 -12.45152 -12.24925 -12.02587 -11.92417 -11.62649 -11.52120 -11.08302 -10.55578 -10.06880 -9.78823 -9.54341 -9.16165 -8.86047 -7.08532 0.29077 0.48603 0.58372 1.35865 1.46499 1.53313 1.88092 2.07792 2.10843 2.25420 2.38098 2.48340 2.55634 2.70607 2.80565 3.45347 3.49310 3.60660 3.88578 3.90800 4.15270 4.18724 4.28635 4.37231 4.40308 4.42132 4.57284 4.61877 4.65413 4.71927 4.75500 4.81413 4.94837 5.04097 5.26647 5.32714 5.41956 5.47249 5.50666 5.55223 5.72717 5.81538 5.94251 6.12724 6.27848 6.47038 6.56288 7.19048 7.27620 7.36187 7.73403 7.90603 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012748 B = 0.003227 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2195.958672 B = 8673.699328 C =10124.145042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.339 6.339 3 C 0.118 3.882 4 C -0.208 4.208 5 C -0.074 4.074 6 C -0.154 4.154 7 C -0.050 4.050 8 C 0.207 3.793 9 H 0.074 0.926 10 C -0.151 4.151 11 N -0.728 5.728 12 C 0.725 3.275 13 O -0.614 6.614 14 N -0.661 5.661 15 C 0.385 3.615 16 C -0.359 4.359 17 H 0.097 0.903 18 C 0.054 3.946 19 N -0.726 5.726 20 Si 0.977 3.023 21 H -0.265 1.265 22 H -0.250 1.250 23 H -0.256 1.256 24 C -0.325 4.325 25 C 0.330 3.670 26 N -0.558 5.558 27 C 0.319 3.681 28 N -0.551 5.551 29 C -0.159 4.159 30 H 0.064 0.936 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.153 0.847 35 H 0.135 0.865 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.044 0.956 39 H 0.404 0.596 40 H 0.404 0.596 41 H 0.310 0.690 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.502 -8.666 4.859 24.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.253 6.253 3 C 0.073 3.927 4 C -0.226 4.226 5 C -0.092 4.092 6 C -0.173 4.173 7 C -0.050 4.050 8 C 0.102 3.898 9 H 0.092 0.908 10 C -0.210 4.210 11 N -0.385 5.385 12 C 0.426 3.574 13 O -0.493 6.493 14 N -0.309 5.309 15 C 0.281 3.719 16 C -0.386 4.386 17 H 0.115 0.885 18 C -0.176 4.176 19 N -0.344 5.344 20 Si 0.797 3.203 21 H -0.190 1.190 22 H -0.173 1.173 23 H -0.179 1.179 24 C -0.344 4.344 25 C 0.024 3.976 26 N -0.242 5.242 27 C 0.013 3.987 28 N -0.234 5.234 29 C -0.178 4.178 30 H 0.083 0.917 31 H 0.134 0.866 32 H 0.086 0.914 33 H 0.169 0.831 34 H 0.171 0.829 35 H 0.152 0.848 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.241 0.759 40 H 0.240 0.760 41 H 0.123 0.877 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -20.999 -8.342 5.290 23.207 hybrid contribution -0.539 -0.182 -0.604 0.830 sum -21.538 -8.524 4.686 23.633 Atomic orbital electron populations 1.23341 0.76367 1.05491 1.02358 1.86052 1.23556 1.26974 1.88717 1.19078 0.92045 0.85051 0.96576 1.21536 1.01205 0.91833 1.08059 1.21239 0.94097 0.98079 0.95775 1.21046 0.94476 0.97919 1.03824 1.19560 0.93795 0.93252 0.98441 1.19477 0.89694 0.90534 0.90075 0.90789 1.22117 1.00836 1.02969 0.95032 1.44994 1.15197 1.27196 1.51126 1.15589 0.82005 0.81576 0.78188 1.90865 1.54954 1.35814 1.67693 1.41771 1.12773 1.27515 1.48815 1.16474 0.80302 0.89616 0.85517 1.20330 0.96700 1.06392 1.15140 0.88477 1.26968 0.94420 1.01225 0.95005 1.69348 1.03421 1.34927 1.26746 0.85191 0.80469 0.76422 0.78219 1.18979 1.17321 1.17917 1.12919 0.95087 1.02340 1.24026 1.24868 0.91189 0.91011 0.90574 1.81038 1.13868 1.12443 1.16802 1.25130 0.91890 0.91186 0.90529 1.80980 1.11531 1.13532 1.17343 1.20288 0.92191 0.98024 1.07301 0.91704 0.86617 0.91413 0.83084 0.82896 0.84757 0.91310 0.90250 0.93733 0.75920 0.75960 0.87726 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.30 16 2 O -0.34 -6.65 10.50 -92.38 -0.97 -7.62 16 3 C 0.12 2.44 6.69 22.51 0.15 2.59 16 4 C -0.21 -3.36 9.04 22.37 0.20 -3.15 16 5 C -0.07 -1.16 10.04 22.25 0.22 -0.93 16 6 C -0.15 -2.92 9.05 22.28 0.20 -2.72 16 7 C -0.05 -1.14 4.95 -19.88 -0.10 -1.23 16 8 C 0.21 5.65 2.77 44.25 0.12 5.77 16 9 H 0.07 2.37 7.44 -2.39 -0.02 2.35 16 10 C -0.15 -3.85 9.46 71.98 0.68 -3.17 16 11 N -0.73 -21.54 5.03 -461.44 -2.32 -23.86 16 12 C 0.73 28.01 7.11 179.06 1.27 29.28 16 13 O -0.61 -28.41 14.92 -3.94 -0.06 -28.47 16 14 N -0.66 -25.49 3.22 -316.43 -1.02 -26.52 16 15 C 0.38 16.94 5.53 38.89 0.22 17.16 16 16 C -0.36 -16.01 7.55 23.07 0.17 -15.84 16 17 H 0.10 4.49 7.20 -2.91 -0.02 4.47 16 18 C 0.05 2.18 4.83 85.58 0.41 2.59 16 19 N -0.73 -27.72 11.07 21.99 0.24 -27.48 16 20 Si 0.98 32.51 29.58 68.60 2.03 34.53 16 21 H -0.27 -9.20 7.11 99.48 0.71 -8.49 16 22 H -0.25 -7.47 7.11 99.48 0.71 -6.77 16 23 H -0.26 -8.72 7.11 99.48 0.71 -8.01 16 24 C -0.32 -14.80 5.88 -20.09 -0.12 -14.92 16 25 C 0.33 15.84 14.00 88.33 1.24 17.08 16 26 N -0.56 -27.68 18.54 19.01 0.35 -27.32 16 27 C 0.32 14.48 14.82 88.35 1.31 15.79 16 28 N -0.55 -25.37 18.53 18.99 0.35 -25.02 16 29 C -0.16 -3.71 9.61 22.37 0.21 -3.50 16 30 H 0.06 0.53 7.67 -2.39 -0.02 0.51 16 31 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.07 0.50 7.65 -2.39 -0.02 0.49 16 33 H 0.15 1.58 6.30 -2.91 -0.02 1.57 16 34 H 0.15 1.52 8.06 -2.91 -0.02 1.49 16 35 H 0.13 2.21 6.91 -2.91 -0.02 2.19 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 38 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 39 H 0.40 9.85 6.89 -92.71 -0.64 9.21 16 40 H 0.40 13.76 8.84 -92.71 -0.82 12.94 16 41 H 0.31 10.68 8.29 -92.71 -0.77 9.92 16 42 H 0.13 2.96 8.04 -2.91 -0.02 2.94 16 Total: -1.00 -61.10 379.69 5.58 -55.52 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: -0.34 Total: 30.13 kcal Atomic # 6 Polarization: 38.79 SS G_CDS: 7.31 Total: 46.10 kcal Atomic # 7 Polarization: -127.81 SS G_CDS: -2.39 Total: -130.20 kcal Atomic # 8 Polarization: -35.06 SS G_CDS: -1.03 Total: -36.09 kcal Atomic # 14 Polarization: 32.51 SS G_CDS: 2.03 Total: 34.53 kcal Total: -61.10 5.58 -55.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192900165.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.134 kcal (2) G-P(sol) polarization free energy of solvation -61.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds