Wall clock time and date at job start Wed Apr 1 2020 00:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09005 * 109.34238 * 2 1 4 4 C 1.50678 * 109.34162 * 240.31533 * 2 1 3 5 5 O 1.21291 * 120.29304 * 24.74899 * 4 2 1 6 6 N 1.35253 * 119.40428 * 204.77071 * 4 2 1 7 7 C 1.40014 * 118.32199 * 1.33312 * 6 4 2 8 8 C 1.38385 * 121.32022 * 197.53523 * 7 6 4 9 9 N 1.32582 * 118.80064 * 179.53451 * 8 7 6 10 10 C 1.32600 * 120.94567 * 0.52438 * 9 8 7 11 11 C 1.48132 * 118.99274 * 179.79397 * 10 9 8 12 12 C 1.39375 * 120.17362 * 179.97438 * 11 10 9 13 13 C 1.37960 * 119.94247 * 180.22652 * 12 11 10 14 14 C 1.38485 * 120.28335 * 359.79528 * 13 12 11 15 15 C 1.38082 * 120.33931 * 359.94985 * 14 13 12 16 16 C 1.38777 * 120.05714 * 0.02851 * 15 14 13 17 17 O 1.35622 * 120.14258 * 179.97438 * 16 15 14 18 18 C 1.34814 * 116.99829 * 354.39439 * 17 16 15 19 19 H 1.07995 * 120.00317 * 5.06407 * 18 17 16 20 20 C 1.38658 * 119.99656 * 185.06070 * 18 17 16 21 21 N 1.31546 * 120.00689 * 0.02562 * 20 18 17 22 22 Si 1.86812 * 119.99868 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47089 * 59.99996 * 22 20 18 24 24 H 1.48498 * 109.47255 * 180.02562 * 22 20 18 25 25 H 1.48499 * 109.46671 * 300.00124 * 22 20 18 26 26 N 1.32779 * 122.01886 * 359.51954 * 10 9 8 27 27 C 1.32642 * 120.40741 * 0.28305 * 26 10 9 28 28 N 1.38308 * 120.86692 * 179.59314 * 27 26 10 29 29 C 1.46904 * 111.00291 * 20.02797 * 28 27 26 30 30 H 1.09000 * 109.47215 * 179.68656 * 1 2 3 31 31 H 1.08999 * 109.47041 * 299.68231 * 1 2 3 32 32 H 1.08992 * 109.47535 * 59.68190 * 1 2 3 33 33 H 0.97005 * 120.84180 * 181.35659 * 6 4 2 34 34 H 1.07997 * 120.60047 * 359.81986 * 8 7 6 35 35 H 1.08003 * 120.02689 * 0.02562 * 12 11 10 36 36 H 1.08001 * 119.85816 * 179.76657 * 13 12 11 37 37 H 1.08001 * 119.82452 * 179.97438 * 14 13 12 38 38 H 1.08000 * 119.96832 * 180.02562 * 15 14 13 39 39 H 0.96998 * 120.00663 * 179.97438 * 21 20 18 40 40 H 1.08998 * 109.46539 * 56.04420 * 29 28 27 41 41 H 1.08994 * 109.47128 * 176.04715 * 29 28 27 42 42 H 1.09000 * 109.47213 * 296.05170 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8910 1.0285 0.0000 4 6 2.0290 -0.7041 -1.2352 5 8 1.3342 -0.7651 -2.2275 6 7 3.2584 -1.2678 -1.2272 7 6 4.0136 -1.1978 -0.0503 8 6 5.3798 -1.4180 -0.0581 9 7 6.0475 -1.3299 1.0839 10 6 5.4230 -1.0467 2.2189 11 6 6.2109 -0.9634 3.4705 12 6 5.5796 -0.6668 4.6772 13 6 6.3187 -0.5858 5.8393 14 6 7.6863 -0.8023 5.8136 15 6 8.3229 -1.1021 4.6255 16 6 7.5930 -1.1875 3.4483 17 8 8.2165 -1.4814 2.2803 18 6 9.5618 -1.5650 2.3088 19 1 10.0882 -1.4818 3.2481 20 6 10.2695 -1.7577 1.1321 21 7 9.6284 -1.8586 -0.0122 22 14 12.1335 -1.8742 1.1716 23 1 12.5399 -3.0186 2.0262 24 1 12.6461 -2.0788 -0.2070 25 1 12.6963 -0.6172 1.7270 26 7 4.1139 -0.8301 2.2669 27 6 3.3813 -0.8976 1.1633 28 7 2.0157 -0.6820 1.2038 29 6 1.6347 0.0550 2.4161 30 1 -0.3633 -1.0276 -0.0056 31 1 -0.3633 0.5089 0.8928 32 1 -0.3634 0.5187 -0.8870 33 1 3.6083 -1.7092 -2.0170 34 1 5.8936 -1.6528 -0.9785 35 1 4.5133 -0.4972 4.7019 36 1 5.8288 -0.3521 6.7730 37 1 8.2578 -0.7366 6.7277 38 1 9.3896 -1.2702 4.6125 39 1 10.1235 -1.9930 -0.8354 40 1 2.1946 0.9890 2.4644 41 1 0.5670 0.2723 2.3888 42 1 1.8602 -0.5495 3.2947 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001243585168.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:03:45 Heat of formation + Delta-G solvation = 29.733031 kcal Electronic energy + Delta-G solvation = -29307.059585 eV Core-core repulsion = 25253.322129 eV Total energy + Delta-G solvation = -4053.737456 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.96491 -41.13676 -40.35844 -38.72015 -37.99536 -36.85397 -34.42709 -34.18575 -33.06533 -31.47777 -30.67038 -29.73847 -28.42116 -27.25413 -25.49143 -24.98476 -24.11273 -23.02150 -22.64384 -20.75415 -19.72117 -19.68095 -19.24125 -18.76874 -17.89677 -17.74287 -17.06796 -16.41299 -16.27211 -16.12413 -15.94202 -15.72433 -15.43121 -15.31727 -15.17438 -14.81597 -14.50060 -14.34689 -14.11542 -13.78837 -13.46361 -13.13710 -13.10910 -12.97579 -12.64776 -12.48206 -12.44186 -12.35027 -12.33205 -12.13450 -12.05706 -11.98054 -11.46020 -11.11704 -10.71476 -10.61252 -10.02977 -9.79313 -9.13314 -8.64517 -8.34933 -5.98973 -0.56264 0.08554 0.66619 0.83956 1.23885 1.39239 1.49202 1.52689 1.73150 2.05543 2.21845 2.66071 2.82226 2.94268 3.01947 3.28674 3.33637 3.50870 3.58674 3.70393 3.85304 3.90474 4.22643 4.29345 4.30281 4.38916 4.51477 4.64014 4.69352 4.75990 4.78991 4.97323 5.02156 5.16662 5.18867 5.19698 5.22651 5.29122 5.38993 5.59450 5.69609 5.72103 5.79665 5.83768 6.07762 6.11674 6.27637 6.68716 7.06525 7.25061 7.90708 8.83262 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012953 B = 0.003747 C = 0.002929 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2161.156824 B = 7470.953405 C = 9558.334289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.069 3.931 3 H 0.102 0.898 4 C 0.524 3.476 5 O -0.535 6.535 6 N -0.641 5.641 7 C -0.007 4.007 8 C 0.144 3.856 9 N -0.497 5.497 10 C 0.366 3.634 11 C -0.157 4.157 12 C -0.022 4.022 13 C -0.207 4.207 14 C -0.044 4.044 15 C -0.260 4.260 16 C 0.149 3.851 17 O -0.161 6.161 18 C -0.424 4.424 19 H 0.098 0.902 20 C -0.008 4.008 21 N -0.886 5.886 22 Si 1.007 2.993 23 H -0.261 1.261 24 H -0.275 1.275 25 H -0.261 1.261 26 N -0.521 5.521 27 C 0.329 3.671 28 N -0.467 5.467 29 C 0.032 3.968 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.084 0.916 33 H 0.423 0.577 34 H 0.176 0.824 35 H 0.147 0.853 36 H 0.156 0.844 37 H 0.150 0.850 38 H 0.124 0.876 39 H 0.268 0.732 40 H 0.046 0.954 41 H 0.115 0.885 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.447 5.102 5.289 16.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.041 4.041 3 H 0.120 0.880 4 C 0.312 3.688 5 O -0.411 6.411 6 N -0.288 5.288 7 C -0.111 4.111 8 C -0.024 4.024 9 N -0.211 5.211 10 C 0.103 3.897 11 C -0.161 4.161 12 C -0.041 4.041 13 C -0.225 4.225 14 C -0.063 4.063 15 C -0.280 4.280 16 C 0.092 3.908 17 O -0.062 6.062 18 C -0.500 4.500 19 H 0.115 0.885 20 C -0.209 4.209 21 N -0.521 5.521 22 Si 0.828 3.172 23 H -0.186 1.186 24 H -0.199 1.199 25 H -0.186 1.186 26 N -0.242 5.242 27 C 0.083 3.917 28 N -0.186 5.186 29 C -0.112 4.112 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.103 0.897 33 H 0.264 0.736 34 H 0.193 0.807 35 H 0.164 0.836 36 H 0.174 0.826 37 H 0.168 0.832 38 H 0.142 0.858 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.133 0.867 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -14.750 4.706 5.163 16.320 hybrid contribution 1.475 -0.141 -1.651 2.219 sum -13.274 4.565 3.512 14.470 Atomic orbital electron populations 1.21781 0.87444 1.04201 1.04925 1.22028 1.00650 0.96997 0.84417 0.88025 1.21055 0.80143 0.77656 0.89980 1.90755 1.55690 1.58840 1.35786 1.43455 1.16464 1.55832 1.13084 1.18969 0.93259 1.11494 0.87357 1.23040 0.88163 0.93436 0.97720 1.68976 1.39301 1.14380 0.98483 1.21227 0.85803 0.90604 0.92022 1.17521 0.89511 1.17494 0.91603 1.21114 1.00267 0.93006 0.89737 1.21096 0.93829 1.09005 0.98605 1.21360 0.95206 0.92942 0.96756 1.21267 1.00908 1.12829 0.92963 1.19899 0.91971 0.91403 0.87485 1.84248 1.20724 1.74207 1.27008 1.21872 0.79825 1.52278 0.96051 0.88484 1.26342 1.04973 0.95946 0.93630 1.70229 1.37808 1.45529 0.98554 0.84814 0.74814 0.79553 0.78060 1.18567 1.19941 1.18606 1.68172 1.06474 1.21043 1.28538 1.19747 0.89895 0.94586 0.87486 1.58210 1.05783 1.48208 1.06363 1.22583 1.02972 0.96621 0.89042 0.91648 0.87944 0.89681 0.73627 0.80711 0.83564 0.82648 0.83241 0.85830 0.92284 0.93563 0.86653 0.89601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.81 8.64 71.98 0.62 -1.19 16 2 C 0.07 1.41 2.55 44.21 0.11 1.52 16 3 H 0.10 1.85 8.13 -2.38 -0.02 1.84 16 4 C 0.52 13.65 7.66 87.57 0.67 14.33 16 5 O -0.54 -15.90 16.96 -3.06 -0.05 -15.95 16 6 N -0.64 -17.21 5.51 -302.28 -1.66 -18.88 16 7 C -0.01 -0.24 6.53 38.32 0.25 0.01 16 8 C 0.14 5.54 11.24 84.61 0.95 6.49 16 9 N -0.50 -23.42 8.14 -189.19 -1.54 -24.96 16 10 C 0.37 15.88 7.55 137.42 1.04 16.91 16 11 C -0.16 -6.84 5.89 -19.94 -0.12 -6.95 16 12 C -0.02 -0.73 9.56 22.48 0.21 -0.52 16 13 C -0.21 -6.04 10.03 22.26 0.22 -5.82 16 14 C -0.04 -1.41 10.03 22.29 0.22 -1.18 16 15 C -0.26 -10.89 9.16 22.36 0.20 -10.68 16 16 C 0.15 7.28 6.65 22.84 0.15 7.43 16 17 O -0.16 -9.23 7.54 -21.16 -0.16 -9.39 16 18 C -0.42 -23.76 9.49 67.92 0.64 -23.11 16 19 H 0.10 5.01 5.21 -2.91 -0.02 4.99 16 20 C -0.01 -0.43 5.49 84.84 0.47 0.04 16 21 N -0.89 -51.46 13.67 21.61 0.30 -51.17 16 22 Si 1.01 41.67 29.55 68.60 2.03 43.70 16 23 H -0.26 -10.27 7.11 99.48 0.71 -9.56 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.26 -10.29 7.11 99.48 0.71 -9.58 16 26 N -0.52 -18.59 8.11 -186.79 -1.51 -20.10 16 27 C 0.33 10.41 6.68 133.46 0.89 11.30 16 28 N -0.47 -11.09 4.64 -707.02 -3.28 -14.37 16 29 C 0.03 0.57 8.75 127.69 1.12 1.69 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.10 0.87 6.28 -2.39 -0.01 0.85 16 32 H 0.08 1.21 7.87 -2.39 -0.02 1.19 16 33 H 0.42 9.93 8.92 -92.70 -0.83 9.10 16 34 H 0.18 6.21 8.06 -2.91 -0.02 6.19 16 35 H 0.15 4.24 7.50 -2.91 -0.02 4.22 16 36 H 0.16 3.22 8.06 -2.91 -0.02 3.19 16 37 H 0.15 3.56 8.06 -2.91 -0.02 3.54 16 38 H 0.12 5.21 5.64 -2.91 -0.02 5.19 16 39 H 0.27 14.43 8.31 -92.71 -0.77 13.66 16 40 H 0.05 0.85 8.12 -2.39 -0.02 0.83 16 41 H 0.12 1.18 6.01 -2.39 -0.01 1.16 16 42 H 0.09 1.67 7.84 -2.39 -0.02 1.66 16 Total: -1.00 -73.69 353.47 2.06 -71.63 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: 0.27 Total: 29.21 kcal Atomic # 6 Polarization: 2.60 SS G_CDS: 7.67 Total: 10.27 kcal Atomic # 7 Polarization: -121.77 SS G_CDS: -7.70 Total: -129.47 kcal Atomic # 8 Polarization: -25.13 SS G_CDS: -0.21 Total: -25.34 kcal Atomic # 14 Polarization: 41.67 SS G_CDS: 2.03 Total: 43.70 kcal Total: -73.69 2.06 -71.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243585168.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.366 kcal (2) G-P(sol) polarization free energy of solvation -73.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds