Wall clock time and date at job start Wed Apr 1 2020 00:04:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47239 * 2 1 4 4 C 1.50699 * 109.47032 * 120.00468 * 2 1 3 5 5 O 1.21288 * 119.99929 * 108.35507 * 4 2 1 6 6 N 1.34773 * 120.00045 * 288.35466 * 4 2 1 7 7 C 1.46499 * 120.00157 * 6.49633 * 6 4 2 8 8 C 1.52994 * 109.47064 * 95.49453 * 7 6 4 9 9 O 1.42897 * 109.47118 * 66.56209 * 8 7 6 10 10 C 1.46506 * 120.00066 * 186.50177 * 6 4 2 11 11 C 1.53005 * 109.47007 * 89.99543 * 10 6 4 12 12 N 1.46497 * 109.46658 * 180.02562 * 11 10 6 13 13 C 1.36938 * 119.99948 * 180.02562 * 12 11 10 14 14 H 1.08006 * 119.99934 * 359.97438 * 13 12 11 15 15 C 1.38811 * 120.00250 * 180.02562 * 13 12 11 16 16 N 1.31614 * 119.99788 * 359.97438 * 15 13 12 17 17 Si 1.86801 * 120.00199 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47053 * 359.97438 * 17 15 13 19 19 H 1.48503 * 109.47279 * 119.99366 * 17 15 13 20 20 H 1.48496 * 109.47073 * 239.99672 * 17 15 13 21 21 C 1.50702 * 109.46677 * 240.00437 * 2 1 3 22 22 C 1.38243 * 119.98465 * 120.00088 * 21 2 1 23 23 C 1.38218 * 120.01076 * 180.02562 * 22 21 2 24 24 C 1.38352 * 119.98806 * 359.97438 * 23 22 21 25 25 Cl 1.73592 * 120.01446 * 179.97438 * 24 23 22 26 26 C 1.38359 * 119.97227 * 0.27110 * 24 23 22 27 27 C 1.38212 * 119.98719 * 359.49210 * 26 24 23 28 28 H 1.09000 * 109.47147 * 66.71637 * 1 2 3 29 29 H 1.08996 * 109.47455 * 186.72239 * 1 2 3 30 30 H 1.09000 * 109.46831 * 306.71700 * 1 2 3 31 31 H 1.08999 * 109.47059 * 215.49623 * 7 6 4 32 32 H 1.09000 * 109.47056 * 335.49735 * 7 6 4 33 33 H 1.09003 * 109.47196 * 186.56546 * 8 7 6 34 34 H 1.09004 * 109.46993 * 306.56371 * 8 7 6 35 35 H 0.96707 * 114.00378 * 179.97438 * 9 8 7 36 36 H 1.08998 * 109.46721 * 209.99546 * 10 6 4 37 37 H 1.09000 * 109.46536 * 329.99755 * 10 6 4 38 38 H 1.08995 * 109.46993 * 299.99930 * 11 10 6 39 39 H 1.08994 * 109.46772 * 60.00236 * 11 10 6 40 40 H 0.97005 * 120.00673 * 359.97438 * 12 11 10 41 41 H 0.97009 * 119.99953 * 180.02562 * 16 15 13 42 42 H 1.07996 * 119.99711 * 0.02562 * 22 21 2 43 43 H 1.08003 * 120.00469 * 180.02562 * 23 22 21 44 44 H 1.07996 * 120.00378 * 179.71847 * 26 24 23 45 45 H 1.07995 * 119.99835 * 180.23234 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.5464 -1.8046 1.1315 6 7 1.9105 -0.1302 2.4407 7 6 1.1648 1.1231 2.5803 8 6 -0.2742 0.8162 2.9997 9 8 -0.2787 0.2619 4.3167 10 6 2.5238 -0.7525 3.6166 11 6 3.9485 -0.2221 3.7896 12 7 4.5619 -0.8449 4.9652 13 6 5.8441 -0.5214 5.3208 14 1 6.4033 0.1927 4.7343 15 6 6.4256 -1.1119 6.4343 16 7 5.7444 -1.9824 7.1487 17 14 8.1750 -0.6710 6.9190 18 1 8.7185 0.3239 5.9598 19 1 8.1790 -0.0936 8.2872 20 1 9.0182 -1.8931 6.8949 21 6 2.0323 -0.7103 -1.2306 22 6 2.8270 -0.0382 -2.1403 23 6 3.2875 -0.6890 -3.2694 24 6 2.9534 -2.0135 -3.4887 25 17 3.5308 -2.8314 -4.9069 26 6 2.1537 -2.6842 -2.5804 27 6 1.6979 -2.0338 -1.4492 28 1 -0.3633 0.4062 -0.9440 29 1 -0.3634 -1.0205 0.1203 30 1 -0.3633 0.6144 0.8238 31 1 1.6394 1.7457 3.3388 32 1 1.1605 1.6515 1.6270 33 1 -0.8593 1.7359 2.9906 34 1 -0.7110 0.1008 2.3028 35 1 -1.1603 0.0428 4.6484 36 1 1.9364 -0.5121 4.5028 37 1 2.5525 -1.8338 3.4820 38 1 4.5358 -0.4625 2.9035 39 1 3.9197 0.8591 3.9242 40 1 4.0596 -1.4860 5.4922 41 1 6.1506 -2.3948 7.9272 42 1 3.0881 0.9956 -1.9689 43 1 3.9087 -0.1639 -3.9799 44 1 1.8889 -3.7168 -2.7534 45 1 1.0768 -2.5583 -0.7382 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001272250385.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:39 Heat of formation + Delta-G solvation = -47.394104 kcal Electronic energy + Delta-G solvation = -27357.729258 eV Core-core repulsion = 23401.754812 eV Total energy + Delta-G solvation = -3955.974446 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.68349 -39.12921 -37.28138 -36.69359 -35.55905 -34.68405 -33.89354 -31.43054 -31.25852 -29.82877 -29.19150 -27.55604 -24.94163 -23.61045 -23.23251 -23.02527 -21.98620 -20.98069 -18.87026 -17.86100 -17.33727 -17.12921 -17.08731 -16.31162 -15.71221 -15.46522 -14.96083 -14.65562 -14.45075 -14.11929 -13.98911 -13.77079 -13.61922 -13.52071 -13.34150 -13.17736 -12.89466 -12.78690 -12.49231 -12.14048 -12.07768 -11.74048 -11.63404 -11.46563 -11.30624 -11.15836 -10.97148 -10.88688 -10.84241 -10.56645 -10.13000 -10.03034 -9.73998 -9.58399 -9.15118 -8.82036 -8.75846 -8.46472 -6.86648 -5.70574 -2.99347 0.92708 1.15115 1.94555 2.68986 3.00911 3.47568 3.48630 3.53009 3.55415 4.02262 4.25918 4.33415 4.61233 4.66259 4.69221 4.79795 4.81843 4.89368 4.96573 5.06883 5.15621 5.22268 5.25866 5.30355 5.43991 5.50697 5.58015 5.61132 5.76927 5.77993 5.84328 5.98120 6.01962 6.07095 6.12776 6.29536 6.34950 6.59717 6.61742 6.81969 6.99520 7.43937 7.57719 7.75555 8.28357 8.48047 9.58849 10.16250 10.51396 11.52471 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009520 B = 0.002872 C = 0.002331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2940.406279 B = 9747.645423 C =12008.656995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.073 4.073 3 H 0.104 0.896 4 C 0.514 3.486 5 O -0.523 6.523 6 N -0.598 5.598 7 C 0.102 3.898 8 C 0.050 3.950 9 O -0.561 6.561 10 C 0.110 3.890 11 C 0.144 3.856 12 N -0.729 5.729 13 C -0.236 4.236 14 H 0.070 0.930 15 C -0.015 4.015 16 N -0.933 5.933 17 Si 0.908 3.092 18 H -0.281 1.281 19 H -0.292 1.292 20 H -0.291 1.291 21 C -0.064 4.064 22 C -0.099 4.099 23 C -0.115 4.115 24 C -0.033 4.033 25 Cl -0.077 7.077 26 C -0.113 4.113 27 C -0.066 4.066 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.377 0.623 36 H 0.090 0.910 37 H 0.081 0.919 38 H 0.018 0.982 39 H 0.016 0.984 40 H 0.384 0.616 41 H 0.254 0.746 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.132 0.868 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.742 7.018 -20.942 28.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.095 4.095 3 H 0.122 0.878 4 C 0.300 3.700 5 O -0.398 6.398 6 N -0.330 5.330 7 C -0.022 4.022 8 C -0.028 4.028 9 O -0.366 6.366 10 C -0.012 4.012 11 C 0.015 3.985 12 N -0.374 5.374 13 C -0.367 4.367 14 H 0.088 0.912 15 C -0.211 4.211 16 N -0.582 5.582 17 Si 0.739 3.261 18 H -0.206 1.206 19 H -0.219 1.219 20 H -0.218 1.218 21 C -0.065 4.065 22 C -0.118 4.118 23 C -0.133 4.133 24 C -0.060 4.060 25 Cl -0.049 7.049 26 C -0.132 4.132 27 C -0.084 4.084 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.112 0.888 33 H 0.072 0.928 34 H 0.073 0.927 35 H 0.224 0.776 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.036 0.964 39 H 0.034 0.966 40 H 0.218 0.782 41 H 0.064 0.936 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.150 0.850 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.590 6.511 -21.180 27.680 hybrid contribution 0.359 -0.046 0.451 0.578 sum -16.231 6.465 -20.729 27.110 Atomic orbital electron populations 1.22155 0.92054 1.03430 1.03435 1.20316 0.97774 1.00249 0.91141 0.87825 1.20372 0.79279 0.86154 0.84161 1.90753 1.43483 1.19915 1.85632 1.47763 1.52955 1.24330 1.07965 1.21761 0.90844 0.86856 1.02691 1.22956 0.97348 0.97438 0.85095 1.86611 1.33878 1.84994 1.31117 1.21748 0.94325 0.98654 0.86493 1.20896 0.91059 0.95399 0.91121 1.42206 1.14244 1.51592 1.29338 1.19250 0.89898 1.19794 1.07741 0.91232 1.24745 0.98481 0.99574 0.98287 1.69678 1.36693 1.32138 1.19659 0.86100 0.84560 0.77493 0.77959 1.20585 1.21870 1.21841 1.19435 0.97838 0.94468 0.94719 1.20974 0.97047 1.00178 0.93551 1.20955 1.00941 0.92869 0.98568 1.20939 1.00755 0.93690 0.90609 1.98364 1.87910 1.79235 1.39348 1.21036 0.97919 1.00420 0.93810 1.20924 0.98540 0.93614 0.95316 0.91069 0.91678 0.90605 0.89076 0.88808 0.92800 0.92722 0.77617 0.89150 0.90071 0.96413 0.96648 0.78223 0.93581 0.85098 0.84993 0.85011 0.85083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 8.01 37.16 0.30 -0.74 16 2 C -0.07 -0.71 2.06 -92.92 -0.19 -0.90 16 3 H 0.10 0.78 6.78 -51.93 -0.35 0.43 16 4 C 0.51 7.32 6.88 -10.99 -0.08 7.24 16 5 O -0.52 -9.79 14.29 5.55 0.08 -9.71 16 6 N -0.60 -8.29 2.47 -173.69 -0.43 -8.72 16 7 C 0.10 0.99 5.33 -4.05 -0.02 0.97 16 8 C 0.05 0.40 6.37 37.15 0.24 0.63 16 9 O -0.56 -5.81 12.06 -35.23 -0.42 -6.24 16 10 C 0.11 2.00 5.42 -4.04 -0.02 1.97 16 11 C 0.14 3.17 6.58 -4.04 -0.03 3.14 16 12 N -0.73 -19.73 5.60 -59.91 -0.34 -20.07 16 13 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 14 H 0.07 2.00 7.83 -52.48 -0.41 1.59 16 15 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 16 N -0.93 -29.19 13.06 55.49 0.72 -28.46 16 17 Si 0.91 23.17 29.55 -169.99 -5.02 18.14 16 18 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 19 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 20 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 21 C -0.06 -0.70 4.51 -104.62 -0.47 -1.17 16 22 C -0.10 -0.97 9.67 -39.59 -0.38 -1.36 16 23 C -0.11 -1.15 9.83 -39.55 -0.39 -1.54 16 24 C -0.03 -0.36 6.32 -39.49 -0.25 -0.61 16 25 Cl -0.08 -0.79 28.96 -51.86 -1.50 -2.29 16 26 C -0.11 -1.25 9.83 -39.55 -0.39 -1.64 16 27 C -0.07 -0.76 7.90 -39.59 -0.31 -1.07 16 28 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.49 7.63 -51.93 -0.40 0.10 16 30 H 0.08 0.40 3.62 -51.93 -0.19 0.22 16 31 H 0.09 0.98 8.11 -51.93 -0.42 0.56 16 32 H 0.09 0.60 5.38 -51.93 -0.28 0.32 16 33 H 0.05 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.39 5.85 -51.93 -0.30 0.09 16 35 H 0.38 2.24 9.12 45.56 0.42 2.66 16 36 H 0.09 1.64 6.66 -51.93 -0.35 1.29 16 37 H 0.08 1.66 7.34 -51.93 -0.38 1.27 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.38 10.84 7.67 -40.82 -0.31 10.53 16 41 H 0.25 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.13 0.97 7.94 -52.49 -0.42 0.55 16 43 H 0.13 1.07 8.06 -52.48 -0.42 0.65 16 44 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 45 H 0.13 1.51 7.32 -52.49 -0.38 1.13 16 LS Contribution 379.76 15.07 5.72 5.72 Total: -1.00 -36.77 379.76 -8.88 -45.65 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -5.45 Total: 8.68 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -2.24 Total: -2.71 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: -0.04 Total: -57.26 kcal Atomic # 8 Polarization: -15.60 SS G_CDS: -0.35 Total: -15.94 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.02 Total: 18.14 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.50 Total: -2.29 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -36.77 -8.88 -45.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001272250385.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.742 kcal (2) G-P(sol) polarization free energy of solvation -36.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds