Wall clock time and date at job start Tue Mar 31 2020 23:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 O 1.42907 * 109.46911 * 283.79497 * 3 2 1 5 5 C 1.42896 * 113.99948 * 180.02562 * 4 3 2 6 6 C 1.52997 * 109.47433 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47491 * 179.97438 * 6 5 4 8 8 O 1.21278 * 119.99679 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00004 * 180.02562 * 7 6 5 10 10 C 1.46493 * 119.99713 * 180.02562 * 9 7 6 11 11 H 1.08998 * 110.92312 * 37.44238 * 10 9 7 12 12 C 1.55161 * 111.00596 * 161.34791 * 10 9 7 13 13 C 1.54333 * 103.02098 * 153.37661 * 12 10 9 14 14 N 1.47021 * 107.26894 * 338.14001 * 13 12 10 15 15 C 1.34777 * 125.64880 * 178.84609 * 14 13 12 16 16 O 1.21283 * 119.99750 * 179.69292 * 15 14 13 17 17 C 1.50702 * 119.99928 * 359.97385 * 15 14 13 18 18 S 1.80999 * 109.46903 * 179.72354 * 17 15 14 19 19 C 1.76200 * 99.99730 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00351 * 0.02562 * 19 18 17 21 21 C 1.38796 * 120.00095 * 179.97438 * 19 18 17 22 22 N 1.31634 * 119.99941 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00384 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47506 * 89.99666 * 23 21 19 25 25 H 1.48498 * 109.47217 * 210.00061 * 23 21 19 26 26 H 1.48502 * 109.46767 * 329.99807 * 23 21 19 27 27 C 1.47428 * 108.70015 * 358.58909 * 14 13 12 28 28 H 4.38447 * 5.44418 * 180.02562 * 4 1 2 29 29 H 1.08995 * 109.47312 * 163.79688 * 3 2 1 30 30 H 1.08999 * 109.47280 * 43.79014 * 3 2 1 31 31 H 1.09003 * 109.47487 * 59.99795 * 5 4 3 32 32 H 1.09000 * 109.47183 * 299.99857 * 5 4 3 33 33 H 1.09003 * 109.46832 * 59.99540 * 6 5 4 34 34 H 1.09000 * 109.46938 * 300.00152 * 6 5 4 35 35 H 0.97001 * 119.99520 * 359.97438 * 9 7 6 36 36 H 1.08995 * 110.71794 * 271.93743 * 12 10 9 37 37 H 1.09000 * 110.71235 * 35.03080 * 12 10 9 38 38 H 1.08999 * 109.98857 * 218.66686 * 13 12 10 39 39 H 1.09000 * 109.77927 * 97.50124 * 13 12 10 40 40 H 1.09004 * 109.46965 * 299.72211 * 17 15 14 41 41 H 1.08994 * 109.46990 * 59.72065 * 17 15 14 42 42 H 0.97002 * 120.00288 * 179.97438 * 22 21 19 43 43 H 1.09000 * 110.36749 * 143.19204 * 27 14 13 44 44 H 1.09002 * 110.36027 * 265.40429 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1224 -0.3204 1.3085 5 6 4.5470 -0.3461 1.4183 6 6 4.9417 -0.6978 2.8540 7 6 6.4440 -0.7256 2.9696 8 8 7.1313 -0.4879 1.9990 9 7 7.0237 -1.0155 4.1513 10 6 8.4840 -1.0419 4.2637 11 1 8.9353 -0.2555 3.6588 12 6 8.9299 -0.9287 5.7456 13 6 10.3005 -1.6382 5.7515 14 7 10.3356 -2.5294 4.5827 15 6 11.3731 -3.3100 4.2211 16 8 11.2888 -4.0127 3.2361 17 6 12.6354 -3.3146 5.0442 18 16 13.8292 -4.4609 4.3115 19 6 15.1684 -4.2712 5.4408 20 1 15.0776 -3.5941 6.2774 21 6 16.3396 -4.9926 5.2560 22 7 16.4498 -5.8190 4.2374 23 14 17.7591 -4.7921 6.4537 24 1 17.6196 -5.7771 7.5562 25 1 19.0425 -5.0228 5.7432 26 1 17.7435 -3.4168 7.0137 27 6 9.0458 -2.4323 3.8754 28 1 -1.0500 -0.0002 0.0000 29 1 3.0089 0.9876 -0.2867 30 1 3.0097 -0.7410 -0.7111 31 1 4.9490 0.6339 1.1610 32 1 4.9505 -1.0947 0.7364 33 1 4.5396 -1.6777 3.1116 34 1 4.5382 0.0510 3.5355 35 1 6.4738 -1.2060 4.9274 36 1 9.0326 0.1161 6.0386 37 1 8.2270 -1.4441 6.4001 38 1 10.4144 -2.2209 6.6656 39 1 11.0986 -0.8994 5.6785 40 1 13.0602 -2.3109 5.0636 41 1 12.4048 -3.6312 6.0614 42 1 17.2684 -6.3230 4.1080 43 1 9.1986 -2.4922 2.7978 44 1 8.3712 -3.2219 4.2066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001283996521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:09 Heat of formation + Delta-G solvation = -58.156726 kcal Electronic energy + Delta-G solvation = -25353.298235 eV Core-core repulsion = 21398.900794 eV Total energy + Delta-G solvation = -3954.397442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.56595 -39.49881 -38.48817 -37.29636 -34.53106 -33.95364 -32.43040 -32.16383 -30.88122 -29.71764 -28.07815 -27.30201 -25.49884 -24.41144 -23.29551 -21.44313 -20.82812 -19.39519 -18.94871 -17.96640 -17.70043 -17.03064 -16.90194 -16.64761 -16.28428 -15.76901 -15.56508 -15.16279 -15.00644 -14.80410 -14.34644 -13.99579 -13.89403 -13.72326 -13.60462 -13.14582 -12.99768 -12.68204 -12.55265 -12.22622 -12.05961 -11.93854 -11.90296 -11.74398 -11.18324 -11.06414 -11.03529 -11.02276 -10.94111 -10.77170 -10.31238 -10.06159 -9.83023 -9.62038 -9.38241 -9.06715 -8.55059 -8.23565 -6.50554 -6.21587 -3.92511 1.94062 2.19801 2.31961 2.52354 2.96915 3.05169 3.22170 3.25890 3.30233 3.45818 3.62048 4.00924 4.09026 4.19982 4.26672 4.33168 4.53174 4.60680 4.71098 4.76484 4.88914 4.91561 5.00294 5.03687 5.07615 5.13544 5.27208 5.32231 5.35801 5.42531 5.45867 5.58238 5.63206 5.68637 5.79681 5.91323 6.01111 6.12441 6.37357 6.57529 7.01684 7.07369 7.58937 7.61707 7.77741 8.34993 8.53174 9.23526 10.85869 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.034343 B = 0.001519 C = 0.001471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.120499 B =18431.401051 C =19025.725294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.194 4.194 3 C 0.174 3.826 4 O -0.387 6.387 5 C 0.076 3.924 6 C -0.139 4.139 7 C 0.519 3.481 8 O -0.532 6.532 9 N -0.719 5.719 10 C 0.132 3.868 11 H 0.106 0.894 12 C -0.136 4.136 13 C 0.104 3.896 14 N -0.626 5.626 15 C 0.549 3.451 16 O -0.512 6.512 17 C -0.146 4.146 18 S -0.060 6.060 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.277 1.277 25 H -0.282 1.282 26 H -0.272 1.272 27 C 0.099 3.901 28 H 0.222 0.778 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.404 0.596 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.268 0.732 43 H 0.084 0.916 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.008 15.016 1.135 32.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.194 4.194 3 C 0.099 3.901 4 O -0.307 6.307 5 C 0.000 4.000 6 C -0.179 4.179 7 C 0.305 3.695 8 O -0.408 6.408 9 N -0.371 5.371 10 C 0.027 3.973 11 H 0.124 0.876 12 C -0.174 4.174 13 C -0.020 4.020 14 N -0.365 5.365 15 C 0.337 3.663 16 O -0.386 6.386 17 C -0.297 4.297 18 S 0.166 5.834 19 C -0.684 4.684 20 H 0.091 0.909 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.203 1.203 25 H -0.207 1.207 26 H -0.197 1.197 27 C -0.026 4.026 28 H 0.239 0.761 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.239 0.761 36 H 0.109 0.891 37 H 0.101 0.899 38 H 0.093 0.907 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.108 0.892 42 H 0.078 0.922 43 H 0.102 0.898 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -28.538 13.920 -1.017 31.768 hybrid contribution 0.693 0.861 2.218 2.479 sum -27.844 14.782 1.201 31.547 Atomic orbital electron populations 1.25002 0.95924 1.00609 0.97613 1.22554 0.93904 1.00787 1.02155 1.19061 0.84628 1.00949 0.85512 1.87853 1.21625 1.91747 1.29470 1.22168 0.79880 1.01972 0.96028 1.21452 0.92162 1.05605 0.98674 1.20428 0.90128 0.76063 0.82862 1.90776 1.65259 1.47992 1.36783 1.45827 1.06921 1.72066 1.12326 1.22113 0.79903 0.98175 0.97155 0.87581 1.22917 0.96959 1.02135 0.95409 1.21958 0.97183 0.93220 0.89607 1.48406 1.14710 1.44925 1.28429 1.20061 0.83037 0.78107 0.85053 1.90722 1.81192 1.39875 1.26778 1.23506 0.97077 1.06495 1.02600 1.85437 1.08426 1.51822 1.37699 1.22855 1.01012 1.30443 1.14053 0.90922 1.24989 0.98111 0.94479 0.95948 1.70021 1.27483 1.24827 1.27926 0.86168 0.80478 0.78628 0.80224 1.20271 1.20734 1.19687 1.22473 0.85099 0.95964 0.99056 0.76115 0.90544 0.90464 0.91894 0.91750 0.87672 0.87775 0.76079 0.89132 0.89852 0.90725 0.90781 0.89205 0.89249 0.92166 0.89782 0.91525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.12 19.25 29.55 0.57 -0.55 16 2 C -0.19 -1.53 13.73 -37.12 -0.51 -2.04 16 3 C 0.17 1.17 6.41 34.37 0.22 1.39 16 4 O -0.39 -3.18 10.30 -35.23 -0.36 -3.54 16 5 C 0.08 0.55 5.23 37.16 0.19 0.74 16 6 C -0.14 -0.79 6.07 -27.88 -0.17 -0.96 16 7 C 0.52 4.34 7.83 -10.98 -0.09 4.26 16 8 O -0.53 -6.82 15.73 5.56 0.09 -6.73 16 9 N -0.72 -4.63 5.23 -51.73 -0.27 -4.90 16 10 C 0.13 1.15 3.32 -65.78 -0.22 0.93 16 11 H 0.11 1.10 7.73 -51.93 -0.40 0.70 16 12 C -0.14 -0.85 6.57 -24.89 -0.16 -1.01 16 13 C 0.10 1.01 6.49 -3.06 -0.02 0.99 16 14 N -0.63 -9.00 3.33 -170.51 -0.57 -9.57 16 15 C 0.55 10.77 7.87 -10.98 -0.09 10.69 16 16 O -0.51 -12.23 16.12 5.55 0.09 -12.14 16 17 C -0.15 -3.00 5.35 36.01 0.19 -2.81 16 18 S -0.06 -1.66 20.57 -107.50 -2.21 -3.87 16 19 C -0.54 -15.27 9.50 30.94 0.29 -14.97 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.11 5.49 -17.43 -0.10 2.02 16 22 N -0.87 -26.25 13.22 55.49 0.73 -25.51 16 23 Si 0.92 21.36 29.55 -169.99 -5.02 16.34 16 24 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.10 1.23 6.60 -2.53 -0.02 1.21 16 28 H 0.22 0.59 7.80 -54.09 -0.42 0.16 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 32 H 0.06 0.50 8.10 -51.93 -0.42 0.08 16 33 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.10 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.40 1.30 8.51 -40.82 -0.35 0.95 16 36 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.38 7.99 -51.93 -0.42 -0.04 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 1.71 8.14 -51.91 -0.42 1.28 16 41 H 0.09 1.68 8.14 -51.92 -0.42 1.26 16 42 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 43 H 0.08 1.29 8.04 -51.93 -0.42 0.87 16 44 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 398.89 15.07 6.01 6.01 Total: -1.00 -38.76 398.89 -8.03 -46.78 By element: Atomic # 1 Polarization: 3.86 SS G_CDS: -6.62 Total: -2.76 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 0.10 Total: -0.11 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: -0.10 Total: -39.98 kcal Atomic # 8 Polarization: -22.23 SS G_CDS: -0.19 Total: -22.41 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Atomic # 16 Polarization: -1.66 SS G_CDS: -2.21 Total: -3.87 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -38.76 -8.03 -46.78 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001283996521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.373 kcal (2) G-P(sol) polarization free energy of solvation -38.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds