Wall clock time and date at job start Wed Apr 1 2020 00:15:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46906 * 2 1 4 4 C 1.53005 * 109.47166 * 240.00414 * 2 1 3 5 5 C 1.52999 * 109.47064 * 174.99872 * 4 2 1 6 6 N 1.46504 * 109.47021 * 179.97438 * 5 4 2 7 7 C 1.34773 * 120.00130 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99924 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99991 * 179.97438 * 7 6 5 10 10 C 1.50703 * 109.46928 * 179.97438 * 9 7 6 11 11 C 1.41385 * 126.57521 * 90.00531 * 10 9 7 12 12 C 1.34515 * 106.84000 * 180.02562 * 11 10 9 13 13 O 1.34307 * 108.41877 * 359.97438 * 12 11 10 14 14 C 1.34300 * 109.47608 * 0.02562 * 13 12 11 15 15 N 1.46493 * 109.47199 * 120.00041 * 2 1 3 16 16 C 1.34769 * 120.00490 * 275.00162 * 15 2 1 17 17 O 1.21286 * 119.99887 * 359.97438 * 16 15 2 18 18 C 1.50696 * 120.00547 * 180.02562 * 16 15 2 19 19 S 1.81004 * 109.47457 * 179.97438 * 18 16 15 20 20 C 1.76200 * 100.00192 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99640 * 359.97438 * 20 19 18 22 22 C 1.38792 * 120.00126 * 180.02562 * 20 19 18 23 23 N 1.31636 * 120.00057 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00134 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46842 * 60.00030 * 24 22 20 26 26 H 1.48500 * 109.47084 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47116 * 300.00219 * 24 22 20 28 28 H 1.09001 * 109.47431 * 299.99856 * 1 2 3 29 29 H 1.09003 * 109.47062 * 59.99845 * 1 2 3 30 30 H 1.09000 * 109.47256 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47151 * 54.99733 * 4 2 1 32 32 H 1.08997 * 109.46849 * 295.00043 * 4 2 1 33 33 H 1.08995 * 109.47154 * 60.00189 * 5 4 2 34 34 H 1.09001 * 109.47007 * 299.99593 * 5 4 2 35 35 H 0.97009 * 119.99789 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.47196 * 60.00269 * 9 7 6 37 37 H 1.08997 * 109.47255 * 300.00411 * 9 7 6 38 38 H 1.08001 * 126.58267 * 359.76498 * 11 10 9 39 39 H 1.07996 * 125.79027 * 180.02562 * 12 11 10 40 40 H 1.08001 * 125.78769 * 180.02562 * 14 13 12 41 41 H 0.97009 * 119.99835 * 95.00167 * 15 2 1 42 42 H 1.09000 * 109.47157 * 299.99867 * 18 16 15 43 43 H 1.09001 * 109.47454 * 59.99754 * 18 16 15 44 44 H 0.96994 * 119.99919 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 7 4.0532 -1.3042 -2.5097 7 6 5.3740 -1.3396 -2.7754 8 8 6.1584 -0.7998 -2.0241 9 6 5.8764 -2.0510 -4.0052 10 6 7.3782 -1.9434 -4.0694 11 6 8.3122 -2.8457 -3.5102 12 6 9.5362 -2.3700 -3.8018 13 8 9.3938 -1.2342 -4.5043 14 6 8.0873 -0.9706 -4.6695 15 7 2.0183 -0.6906 1.1961 16 6 2.1470 -0.0184 2.3571 17 8 1.8590 1.1585 2.4115 18 6 2.6499 -0.7286 3.5873 19 16 2.7114 0.4345 4.9728 20 6 3.3159 -0.6304 6.2398 21 1 3.5251 -1.6669 6.0198 22 6 3.5222 -0.1376 7.5208 23 7 3.2658 1.1253 7.7893 24 14 4.1623 -1.2667 8.8642 25 1 5.4889 -1.8041 8.4686 26 1 4.2947 -0.5034 10.1311 27 1 3.2118 -2.3905 9.0609 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6053 -0.2616 -2.1371 32 1 1.7516 -1.7714 -1.2057 33 1 3.9994 -1.0727 -0.4261 34 1 3.8531 0.4371 -1.3574 35 1 3.4259 -1.7363 -3.1103 36 1 5.4414 -1.5925 -4.8933 37 1 5.5885 -3.1013 -3.9605 38 1 8.0862 -3.7423 -2.9521 39 1 10.4742 -2.8247 -3.5195 40 1 7.6759 -0.1219 -5.1955 41 1 2.2491 -1.6318 1.1525 42 1 1.9778 -1.5510 3.8324 43 1 3.6493 -1.1204 3.3978 44 1 3.4103 1.4698 8.6844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284422259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:56 Heat of formation + Delta-G solvation = -71.091334 kcal Electronic energy + Delta-G solvation = -25633.910484 eV Core-core repulsion = 21678.952156 eV Total energy + Delta-G solvation = -3954.958328 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.81760 -39.97091 -39.34373 -36.65683 -34.67280 -34.27474 -32.40606 -31.88988 -30.83899 -29.55369 -28.50419 -27.78223 -25.46204 -23.77872 -21.89309 -21.62632 -21.32816 -20.35935 -20.22032 -17.91726 -17.79356 -17.32613 -16.61010 -16.28137 -16.05164 -15.93626 -15.72221 -14.96853 -14.86618 -14.78442 -14.53997 -14.00117 -13.94877 -13.62609 -13.25637 -13.18221 -13.04736 -12.94717 -12.76229 -12.62887 -12.14917 -11.98360 -11.93724 -11.67989 -11.52575 -11.09386 -11.02172 -11.01575 -10.74645 -10.31013 -9.84924 -9.80086 -9.37781 -9.36505 -9.04220 -8.90770 -8.80969 -8.21689 -6.47349 -6.19216 -3.89647 1.50340 2.22272 2.39853 2.86654 3.00567 3.04822 3.11275 3.25365 3.29152 3.32839 3.72558 4.22792 4.34455 4.44439 4.45428 4.53538 4.65333 4.73210 4.78373 5.00286 5.09338 5.15735 5.16789 5.22143 5.30688 5.34182 5.39584 5.55248 5.61427 5.67633 5.68309 5.76179 5.86761 5.91233 6.00098 6.11395 6.15535 6.17539 6.18603 6.65863 6.82970 7.17963 7.61493 7.71062 7.97783 8.37343 8.63103 9.25928 10.88174 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.002086 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.694195 B =13422.245806 C =15619.214362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.146 3.854 3 H 0.091 0.909 4 C -0.136 4.136 5 C 0.116 3.884 6 N -0.734 5.734 7 C 0.508 3.492 8 O -0.524 6.524 9 C -0.069 4.069 10 C -0.167 4.167 11 C -0.200 4.200 12 C -0.042 4.042 13 O -0.177 6.177 14 C -0.026 4.026 15 N -0.736 5.736 16 C 0.534 3.466 17 O -0.516 6.516 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.868 5.868 24 Si 0.919 3.081 25 H -0.274 1.274 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.084 0.916 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.070 0.930 35 H 0.399 0.601 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.146 0.854 39 H 0.202 0.798 40 H 0.199 0.801 41 H 0.397 0.603 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.957 -10.441 -30.061 31.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.007 4.007 6 N -0.387 5.387 7 C 0.293 3.707 8 O -0.399 6.399 9 C -0.109 4.109 10 C -0.169 4.169 11 C -0.219 4.219 12 C -0.109 4.109 13 O -0.072 6.072 14 C -0.094 4.094 15 N -0.391 5.391 16 C 0.320 3.680 17 O -0.390 6.390 18 C -0.305 4.305 19 S 0.167 5.833 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.200 1.200 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.233 0.767 36 H 0.119 0.881 37 H 0.121 0.879 38 H 0.164 0.836 39 H 0.219 0.781 40 H 0.216 0.784 41 H 0.231 0.769 42 H 0.107 0.893 43 H 0.107 0.893 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 2.290 -7.728 -29.373 30.458 hybrid contribution 0.319 -2.951 0.680 3.045 sum 2.609 -10.678 -28.693 30.727 Atomic orbital electron populations 1.22173 0.95022 1.02079 1.02829 1.20777 0.94144 0.97761 0.83253 0.89091 1.22102 0.94591 1.02009 0.98779 1.21406 0.93532 0.98029 0.87723 1.46028 1.07517 1.57764 1.27425 1.20647 0.82068 0.80613 0.87330 1.90781 1.55160 1.44665 1.49248 1.19975 0.91553 1.02427 0.96923 1.19767 0.94939 0.97796 1.04366 1.21672 0.92230 1.02638 1.05356 1.23986 1.00175 0.87356 0.99420 1.84068 1.27192 1.37511 1.58418 1.23774 0.80209 1.00844 1.04590 1.46123 1.69505 1.13860 1.09575 1.20294 0.76712 0.87220 0.83765 1.90700 1.48238 1.15715 1.84388 1.23538 1.03662 1.04853 0.98438 1.85381 1.86214 1.12946 0.98759 1.22825 1.51045 0.98122 0.96389 0.91010 1.24991 0.95108 0.95548 0.97947 1.70009 1.45482 1.13226 1.21594 0.86226 0.79329 0.80005 0.79952 1.19932 1.20811 1.19965 0.91429 0.91886 0.92548 0.89771 0.90653 0.90943 0.91157 0.76724 0.88088 0.87917 0.83594 0.78139 0.78388 0.76945 0.89288 0.89255 0.92143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.59 9.48 37.16 0.35 -1.24 16 2 C 0.15 1.53 2.57 -67.93 -0.17 1.36 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 4 C -0.14 -0.90 4.87 -26.73 -0.13 -1.03 16 5 C 0.12 1.05 5.56 -4.04 -0.02 1.03 16 6 N -0.73 -5.16 5.56 -60.30 -0.33 -5.50 16 7 C 0.51 4.93 7.82 -10.99 -0.09 4.84 16 8 O -0.52 -7.99 16.03 5.56 0.09 -7.90 16 9 C -0.07 -0.43 6.22 -29.03 -0.18 -0.61 16 10 C -0.17 -1.49 4.66 -104.74 -0.49 -1.98 16 11 C -0.20 -1.81 10.87 -39.70 -0.43 -2.24 16 12 C -0.04 -0.35 12.09 29.42 0.36 0.00 16 13 O -0.18 -1.73 10.65 5.71 0.06 -1.67 16 14 C -0.03 -0.23 12.01 29.41 0.35 0.13 16 15 N -0.74 -9.33 4.53 -53.81 -0.24 -9.57 16 16 C 0.53 9.85 7.81 -10.99 -0.09 9.77 16 17 O -0.52 -11.61 15.52 5.55 0.09 -11.52 16 18 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 19 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 20 C -0.54 -15.47 9.50 30.94 0.29 -15.17 16 21 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 22 C 0.07 2.12 5.49 -17.43 -0.10 2.02 16 23 N -0.87 -26.49 13.22 55.49 0.73 -25.75 16 24 Si 0.92 21.70 29.55 -169.99 -5.02 16.67 16 25 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.41 8.14 -51.92 -0.42 -0.01 16 32 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.81 7.75 -51.93 -0.40 0.41 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.40 1.36 8.47 -40.82 -0.35 1.01 16 36 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 39 H 0.20 0.97 8.06 -52.49 -0.42 0.55 16 40 H 0.20 1.10 8.06 -52.49 -0.42 0.68 16 41 H 0.40 3.95 8.60 -40.82 -0.35 3.60 16 42 H 0.09 1.66 8.14 -51.92 -0.42 1.24 16 43 H 0.09 1.71 8.14 -51.91 -0.42 1.29 16 44 H 0.27 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 396.19 15.07 5.97 5.97 Total: -1.00 -39.72 396.19 -7.53 -47.25 By element: Atomic # 1 Polarization: 8.45 SS G_CDS: -6.53 Total: 1.91 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: -0.12 Total: -6.04 kcal Atomic # 7 Polarization: -40.98 SS G_CDS: 0.16 Total: -40.82 kcal Atomic # 8 Polarization: -21.33 SS G_CDS: 0.24 Total: -21.09 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.72 -7.53 -47.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284422259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.842 kcal (2) G-P(sol) polarization free energy of solvation -39.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds