Wall clock time and date at job start Wed Apr 1 2020 00:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.46906 * 2 1 4 4 C 1.53005 * 109.47166 * 240.00414 * 2 1 3 5 5 C 1.52999 * 109.47064 * 174.99872 * 4 2 1 6 6 N 1.46504 * 109.47021 * 179.97438 * 5 4 2 7 7 C 1.34773 * 120.00130 * 179.97438 * 6 5 4 8 8 O 1.21281 * 119.99924 * 0.02562 * 7 6 5 9 9 C 1.50698 * 119.99991 * 179.97438 * 7 6 5 10 10 C 1.50703 * 109.46928 * 179.97438 * 9 7 6 11 11 C 1.41385 * 126.57521 * 90.00531 * 10 9 7 12 12 C 1.34515 * 106.84000 * 180.02562 * 11 10 9 13 13 O 1.34307 * 108.41877 * 359.97438 * 12 11 10 14 14 C 1.34300 * 109.47608 * 0.02562 * 13 12 11 15 15 N 1.46493 * 109.47199 * 120.00041 * 2 1 3 16 16 C 1.34769 * 120.00490 * 275.00162 * 15 2 1 17 17 O 1.21286 * 119.99887 * 359.97438 * 16 15 2 18 18 C 1.50696 * 120.00547 * 180.02562 * 16 15 2 19 19 S 1.81004 * 109.47457 * 179.97438 * 18 16 15 20 20 C 1.76200 * 100.00192 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99640 * 359.97438 * 20 19 18 22 22 C 1.38792 * 120.00126 * 180.02562 * 20 19 18 23 23 N 1.31636 * 120.00057 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 120.00134 * 179.97438 * 22 20 19 25 25 H 1.48495 * 109.46842 * 60.00030 * 24 22 20 26 26 H 1.48500 * 109.47084 * 180.02562 * 24 22 20 27 27 H 1.48496 * 109.47116 * 300.00219 * 24 22 20 28 28 H 1.09001 * 109.47431 * 299.99856 * 1 2 3 29 29 H 1.09003 * 109.47062 * 59.99845 * 1 2 3 30 30 H 1.09000 * 109.47256 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47151 * 54.99733 * 4 2 1 32 32 H 1.08997 * 109.46849 * 295.00043 * 4 2 1 33 33 H 1.08995 * 109.47154 * 60.00189 * 5 4 2 34 34 H 1.09001 * 109.47007 * 299.99593 * 5 4 2 35 35 H 0.97009 * 119.99789 * 359.97438 * 6 5 4 36 36 H 1.09000 * 109.47196 * 60.00269 * 9 7 6 37 37 H 1.08997 * 109.47255 * 300.00411 * 9 7 6 38 38 H 1.08001 * 126.58267 * 359.76498 * 11 10 9 39 39 H 1.07996 * 125.79027 * 180.02562 * 12 11 10 40 40 H 1.08001 * 125.78769 * 180.02562 * 14 13 12 41 41 H 0.97009 * 119.99835 * 95.00167 * 15 2 1 42 42 H 1.09000 * 109.47157 * 299.99867 * 18 16 15 43 43 H 1.09001 * 109.47454 * 59.99754 * 18 16 15 44 44 H 0.96994 * 119.99919 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 3.5648 -0.6132 -1.3138 6 7 4.0532 -1.3042 -2.5097 7 6 5.3740 -1.3396 -2.7754 8 8 6.1584 -0.7998 -2.0241 9 6 5.8764 -2.0510 -4.0052 10 6 7.3782 -1.9434 -4.0694 11 6 8.3122 -2.8457 -3.5102 12 6 9.5362 -2.3700 -3.8018 13 8 9.3938 -1.2342 -4.5043 14 6 8.0873 -0.9706 -4.6695 15 7 2.0183 -0.6906 1.1961 16 6 2.1470 -0.0184 2.3571 17 8 1.8590 1.1585 2.4115 18 6 2.6499 -0.7286 3.5873 19 16 2.7114 0.4345 4.9728 20 6 3.3159 -0.6304 6.2398 21 1 3.5251 -1.6669 6.0198 22 6 3.5222 -0.1376 7.5208 23 7 3.2658 1.1253 7.7893 24 14 4.1623 -1.2667 8.8642 25 1 5.4889 -1.8041 8.4686 26 1 4.2947 -0.5034 10.1311 27 1 3.2118 -2.3905 9.0609 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6053 -0.2616 -2.1371 32 1 1.7516 -1.7714 -1.2057 33 1 3.9994 -1.0727 -0.4261 34 1 3.8531 0.4371 -1.3574 35 1 3.4259 -1.7363 -3.1103 36 1 5.4414 -1.5925 -4.8933 37 1 5.5885 -3.1013 -3.9605 38 1 8.0862 -3.7423 -2.9521 39 1 10.4742 -2.8247 -3.5195 40 1 7.6759 -0.1219 -5.1955 41 1 2.2491 -1.6318 1.1525 42 1 1.9778 -1.5510 3.8324 43 1 3.6493 -1.1204 3.3978 44 1 3.4103 1.4698 8.6844 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284422259.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:55 Heat of formation + Delta-G solvation = -101.592448 kcal Electronic energy + Delta-G solvation = -25635.233111 eV Core-core repulsion = 21678.952156 eV Total energy + Delta-G solvation = -3956.280956 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.43703 -40.92768 -40.50052 -37.68277 -35.59058 -34.92575 -34.59854 -33.06215 -31.52120 -30.45917 -29.77862 -28.38235 -27.67183 -24.55745 -22.54121 -22.51120 -22.10243 -21.58548 -20.89979 -19.84550 -18.50549 -18.07763 -17.91338 -17.31465 -16.89375 -16.80440 -16.71885 -16.59255 -16.34248 -15.95453 -15.51664 -15.11283 -14.83101 -14.77759 -14.53794 -14.35907 -13.98235 -13.86224 -13.66478 -13.39310 -13.27967 -13.18764 -13.01545 -12.87844 -12.62670 -12.49773 -12.38574 -12.33192 -11.90733 -11.74683 -11.14332 -11.11347 -10.91491 -10.52945 -10.29857 -10.17950 -10.03511 -9.42435 -8.68199 -8.35789 -6.14158 0.88216 1.25838 1.42627 1.45594 1.55735 1.58891 1.62675 1.68441 2.25531 2.29672 2.31620 2.39497 2.97979 3.31152 3.75618 3.77875 3.85035 3.95840 4.01316 4.08457 4.11412 4.21894 4.27939 4.43831 4.48381 4.50712 4.57410 4.64893 4.66375 4.80925 4.82878 4.90740 5.05859 5.10825 5.15827 5.30746 5.34365 5.39778 5.45147 5.56879 5.60904 6.18131 6.20657 6.51934 6.62117 7.05060 7.27124 7.34215 8.73262 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010129 B = 0.002086 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2763.694195 B =13422.245806 C =15619.214362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.140 3.860 3 H 0.062 0.938 4 C -0.116 4.116 5 C 0.118 3.882 6 N -0.713 5.713 7 C 0.504 3.496 8 O -0.589 6.589 9 C -0.060 4.060 10 C -0.184 4.184 11 C -0.223 4.223 12 C -0.052 4.052 13 O -0.195 6.195 14 C -0.043 4.043 15 N -0.710 5.710 16 C 0.534 3.466 17 O -0.565 6.565 18 C -0.131 4.131 19 S -0.152 6.152 20 C -0.548 4.548 21 H 0.082 0.918 22 C 0.012 3.988 23 N -0.911 5.911 24 Si 0.999 3.001 25 H -0.264 1.264 26 H -0.278 1.278 27 H -0.260 1.260 28 H 0.028 0.972 29 H 0.089 0.911 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.106 0.894 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.422 0.578 36 H 0.136 0.864 37 H 0.129 0.871 38 H 0.155 0.845 39 H 0.228 0.772 40 H 0.222 0.778 41 H 0.414 0.586 42 H 0.111 0.889 43 H 0.103 0.897 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.172 -13.578 -32.202 34.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.080 0.920 4 C -0.154 4.154 5 C -0.007 4.007 6 N -0.367 5.367 7 C 0.292 3.708 8 O -0.469 6.469 9 C -0.099 4.099 10 C -0.186 4.186 11 C -0.242 4.242 12 C -0.118 4.118 13 O -0.091 6.091 14 C -0.110 4.110 15 N -0.364 5.364 16 C 0.320 3.680 17 O -0.443 6.443 18 C -0.282 4.282 19 S 0.075 5.925 20 C -0.695 4.695 21 H 0.100 0.900 22 C -0.193 4.193 23 N -0.548 5.548 24 Si 0.821 3.179 25 H -0.188 1.188 26 H -0.203 1.203 27 H -0.185 1.185 28 H 0.048 0.952 29 H 0.107 0.893 30 H 0.096 0.904 31 H 0.133 0.867 32 H 0.125 0.875 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.260 0.740 36 H 0.154 0.846 37 H 0.147 0.853 38 H 0.173 0.827 39 H 0.245 0.755 40 H 0.239 0.761 41 H 0.251 0.749 42 H 0.129 0.871 43 H 0.121 0.879 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.454 -10.937 -31.598 33.469 hybrid contribution 0.541 -1.992 1.206 2.391 sum 1.995 -12.929 -30.392 33.088 Atomic orbital electron populations 1.22119 0.93827 1.03269 1.02280 1.21006 0.95011 0.96788 0.83630 0.92001 1.21993 0.92305 1.03591 0.97505 1.21244 0.95261 0.96433 0.87730 1.45812 1.07288 1.56742 1.26871 1.21324 0.82195 0.79699 0.87599 1.90761 1.56883 1.47620 1.51603 1.20067 0.89854 1.03781 0.96239 1.20203 0.96546 0.97710 1.04117 1.22012 0.92827 1.03399 1.05948 1.24611 1.01392 0.86946 0.98882 1.84055 1.28000 1.38127 1.58884 1.24365 0.79957 1.01671 1.05028 1.45909 1.67491 1.14508 1.08489 1.20006 0.76658 0.86580 0.84757 1.90688 1.50738 1.17707 1.85203 1.23386 1.05242 1.03281 0.96314 1.85557 1.86610 1.17491 1.02845 1.23167 1.51070 0.98431 0.96859 0.90003 1.26153 0.95065 0.97263 1.00778 1.70180 1.46740 1.15505 1.22330 0.84995 0.79035 0.77767 0.76145 1.18824 1.20287 1.18466 0.95228 0.89264 0.90396 0.86656 0.87536 0.93374 0.93899 0.74016 0.84633 0.85288 0.82705 0.75522 0.76136 0.74873 0.87117 0.87850 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.48 71.98 0.68 -2.03 16 2 C 0.14 2.71 2.57 44.99 0.12 2.83 16 3 H 0.06 1.61 7.58 -2.39 -0.02 1.59 16 4 C -0.12 -1.11 4.87 30.60 0.15 -0.96 16 5 C 0.12 1.95 5.56 86.38 0.48 2.43 16 6 N -0.71 -8.05 5.56 -463.07 -2.57 -10.62 16 7 C 0.50 8.99 7.82 87.66 0.69 9.68 16 8 O -0.59 -18.21 16.03 -3.03 -0.05 -18.26 16 9 C -0.06 -0.58 6.22 29.10 0.18 -0.40 16 10 C -0.18 -3.08 4.66 -19.94 -0.09 -3.17 16 11 C -0.22 -3.90 10.87 22.19 0.24 -3.66 16 12 C -0.05 -0.85 12.09 66.97 0.81 -0.04 16 13 O -0.19 -3.81 10.65 -2.50 -0.03 -3.84 16 14 C -0.04 -0.72 12.01 66.97 0.80 0.08 16 15 N -0.71 -17.08 4.53 -442.55 -2.00 -19.09 16 16 C 0.53 19.93 7.81 87.66 0.68 20.61 16 17 O -0.57 -26.55 15.52 -3.05 -0.05 -26.60 16 18 C -0.13 -5.34 6.16 71.23 0.44 -4.90 16 19 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 20 C -0.55 -32.00 9.50 67.95 0.65 -31.35 16 21 H 0.08 4.44 7.80 -2.91 -0.02 4.41 16 22 C 0.01 0.70 5.49 84.85 0.47 1.17 16 23 N -0.91 -57.06 13.22 21.65 0.29 -56.77 16 24 Si 1.00 44.45 29.55 68.60 2.03 46.48 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.28 -12.01 7.11 99.48 0.71 -11.31 16 27 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 28 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.12 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 33 H 0.05 1.04 7.75 -2.39 -0.02 1.02 16 34 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.42 0.93 8.47 -92.70 -0.79 0.14 16 36 H 0.14 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.13 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.16 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.23 2.03 8.06 -2.91 -0.02 2.01 16 40 H 0.22 2.23 8.06 -2.91 -0.02 2.20 16 41 H 0.41 7.15 8.60 -92.70 -0.80 6.36 16 42 H 0.11 4.01 8.14 -2.39 -0.02 3.99 16 43 H 0.10 3.91 8.14 -2.40 -0.02 3.89 16 44 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 Total: -1.00 -93.96 396.19 2.19 -91.77 By element: Atomic # 1 Polarization: 17.06 SS G_CDS: -0.56 Total: 16.50 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 6.29 Total: -9.73 kcal Atomic # 7 Polarization: -82.19 SS G_CDS: -4.29 Total: -86.48 kcal Atomic # 8 Polarization: -48.58 SS G_CDS: -0.12 Total: -48.70 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -93.96 2.19 -91.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284422259.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.818 kcal (2) G-P(sol) polarization free energy of solvation -93.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds