Wall clock time and date at job start Wed Apr 1 2020 00:13:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.52990 * 109.47084 * 240.00246 * 2 1 3 5 5 C 1.53000 * 109.47144 * 174.99958 * 4 2 1 6 6 H 1.08997 * 109.47209 * 304.99742 * 5 4 2 7 7 C 1.53002 * 109.47049 * 184.99671 * 5 4 2 8 8 N 1.46496 * 109.47122 * 64.99871 * 5 4 2 9 9 C 1.34779 * 119.99988 * 204.99664 * 8 5 4 10 10 O 1.21285 * 119.99641 * 0.02562 * 9 8 5 11 11 C 1.50696 * 120.00071 * 179.97438 * 9 8 5 12 12 S 1.81007 * 109.47139 * 180.02562 * 11 9 8 13 13 C 1.76201 * 99.99840 * 179.97438 * 12 11 9 14 14 H 1.07991 * 120.00174 * 0.02562 * 13 12 11 15 15 C 1.38806 * 119.99788 * 179.97438 * 13 12 11 16 16 N 1.31632 * 119.99996 * 0.02562 * 15 13 12 17 17 Si 1.86789 * 119.99916 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47440 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47198 * 120.00117 * 17 15 13 20 20 H 1.48499 * 109.47320 * 239.99841 * 17 15 13 21 21 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 22 22 C 1.34784 * 119.99971 * 275.00026 * 21 2 1 23 23 O 1.21695 * 119.99611 * 359.72672 * 22 21 2 24 24 C 1.46655 * 119.99522 * 179.97438 * 22 21 2 25 25 C 1.36546 * 125.98377 * 179.97438 * 24 22 21 26 26 C 1.40363 * 106.71054 * 179.97438 * 25 24 22 27 27 C 1.35137 * 107.11148 * 0.02562 * 26 25 24 28 28 O 1.33931 * 108.76864 * 359.76777 * 27 26 25 29 29 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 30 30 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 31 31 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47330 * 294.99933 * 4 2 1 33 33 H 1.08999 * 109.47417 * 54.99517 * 4 2 1 34 34 H 1.09006 * 109.47201 * 179.97438 * 7 5 4 35 35 H 1.08992 * 109.47496 * 299.99738 * 7 5 4 36 36 H 1.09003 * 109.47076 * 60.00481 * 7 5 4 37 37 H 0.97002 * 120.00455 * 25.00162 * 8 5 4 38 38 H 1.09005 * 109.47370 * 300.00058 * 11 9 8 39 39 H 1.08997 * 109.47464 * 60.00602 * 11 9 8 40 40 H 0.96993 * 120.00452 * 180.02562 * 16 15 13 41 41 H 0.96999 * 119.99984 * 94.99874 * 21 2 1 42 42 H 1.08002 * 126.64497 * 359.94496 * 25 24 22 43 43 H 1.07996 * 126.44793 * 179.97438 * 26 25 24 44 44 H 1.08000 * 125.61329 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 1 3.8570 0.4359 -1.2678 7 6 4.0644 -1.2249 -2.6240 8 7 4.1536 -1.3341 -0.1824 9 6 5.3748 -0.9910 0.2733 10 8 5.9859 -0.0851 -0.2530 11 6 5.9803 -1.7322 1.4373 12 16 7.6119 -1.0422 1.8090 13 6 8.0738 -2.0642 3.1680 14 1 7.4028 -2.8353 3.5164 15 6 9.3007 -1.8789 3.7901 16 7 10.1189 -0.9393 3.3652 17 14 9.7908 -2.9627 5.2303 18 1 8.7040 -3.9353 5.5103 19 1 11.0374 -3.6970 4.8956 20 1 10.0209 -2.1180 6.4298 21 7 2.0184 -0.6906 1.1962 22 6 2.1471 -0.0182 2.3572 23 8 1.8624 1.1638 2.4105 24 6 2.6355 -0.7097 3.5547 25 6 2.8126 -0.1507 4.7878 26 6 3.2910 -1.1687 5.6275 27 6 3.3843 -2.2902 4.8793 28 8 2.9840 -2.0108 3.6322 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7516 -1.7714 -1.2056 33 1 1.6053 -0.2617 -2.1369 34 1 5.1508 -1.1476 -2.6702 35 1 3.7723 -2.2740 -2.6699 36 1 3.6264 -0.6885 -3.4657 37 1 3.6648 -2.0584 0.2387 38 1 5.3349 -1.6283 2.3096 39 1 6.0810 -2.7874 1.1835 40 1 10.9764 -0.8100 3.7996 41 1 2.2491 -1.6317 1.1526 42 1 2.6219 0.8760 5.0636 43 1 3.5388 -1.0734 6.6743 44 1 3.7218 -3.2541 5.2305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001288504773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:29 Heat of formation + Delta-G solvation = -60.844566 kcal Electronic energy + Delta-G solvation = -28245.604384 eV Core-core repulsion = 24291.090389 eV Total energy + Delta-G solvation = -3954.513995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.64868 -40.14459 -39.08367 -36.95663 -34.56385 -33.09355 -32.42894 -32.35163 -30.94843 -29.50681 -28.49713 -27.06323 -25.48156 -23.93623 -21.97858 -21.74121 -21.25991 -20.71892 -19.90227 -18.56700 -17.83039 -16.84174 -16.37042 -16.29657 -16.18869 -15.97327 -15.01232 -14.81186 -14.66618 -14.48177 -14.10664 -13.89440 -13.57288 -13.27276 -13.15356 -12.99851 -12.90063 -12.71687 -12.68319 -12.54534 -12.35823 -12.30244 -11.92587 -11.58965 -11.10461 -11.07613 -11.01533 -10.96488 -10.76404 -10.33735 -10.03472 -9.80566 -9.44171 -9.35131 -9.07384 -8.82245 -8.63675 -8.21210 -6.48043 -6.21351 -3.90944 1.06450 2.39298 2.61680 2.97870 3.10383 3.15698 3.18791 3.19893 3.27357 3.31038 3.72915 4.19809 4.27207 4.58361 4.64946 4.83955 4.92125 5.01363 5.09339 5.13819 5.15526 5.21457 5.30109 5.38231 5.42408 5.51030 5.61473 5.62831 5.68114 5.73516 5.80431 5.88164 5.91686 5.94551 6.02791 6.14315 6.19559 6.26030 6.32391 6.66891 6.78416 7.30121 7.59197 7.68680 7.98238 8.35245 8.64315 9.23822 10.86267 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010738 B = 0.004322 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.015949 B = 6477.522020 C = 8420.188958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.141 3.859 3 H 0.094 0.906 4 C -0.135 4.135 5 C 0.142 3.858 6 H 0.090 0.910 7 C -0.163 4.163 8 N -0.731 5.731 9 C 0.534 3.466 10 O -0.515 6.515 11 C -0.151 4.151 12 S -0.058 6.058 13 C -0.532 4.532 14 H 0.071 0.929 15 C 0.074 3.926 16 N -0.867 5.867 17 Si 0.917 3.083 18 H -0.272 1.272 19 H -0.280 1.280 20 H -0.280 1.280 21 N -0.712 5.712 22 C 0.610 3.390 23 O -0.520 6.520 24 C -0.088 4.088 25 C -0.112 4.112 26 C -0.223 4.223 27 C 0.003 3.997 28 O -0.166 6.166 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.062 0.938 37 H 0.389 0.611 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.267 0.733 41 H 0.399 0.601 42 H 0.158 0.842 43 H 0.156 0.844 44 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.226 -4.667 -4.450 22.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.112 0.888 4 C -0.173 4.173 5 C 0.037 3.963 6 H 0.108 0.892 7 C -0.221 4.221 8 N -0.387 5.387 9 C 0.320 3.680 10 O -0.389 6.389 11 C -0.302 4.302 12 S 0.168 5.832 13 C -0.680 4.680 14 H 0.090 0.910 15 C -0.135 4.135 16 N -0.503 5.503 17 Si 0.743 3.257 18 H -0.197 1.197 19 H -0.206 1.206 20 H -0.206 1.206 21 N -0.365 5.365 22 C 0.397 3.603 23 O -0.397 6.397 24 C -0.140 4.140 25 C -0.133 4.133 26 C -0.242 4.242 27 C -0.067 4.067 28 O -0.061 6.061 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.081 0.919 37 H 0.224 0.776 38 H 0.103 0.897 39 H 0.105 0.895 40 H 0.077 0.923 41 H 0.235 0.765 42 H 0.176 0.824 43 H 0.174 0.826 44 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges -20.262 -2.388 -5.571 21.149 hybrid contribution -0.297 -2.573 2.046 3.301 sum -20.560 -4.961 -3.525 21.442 Atomic orbital electron populations 1.22187 0.94897 1.02209 1.02841 1.21052 0.93941 0.98029 0.83243 0.88770 1.22259 0.95190 1.01775 0.98094 1.20917 0.91201 0.98123 0.86087 0.89187 1.22177 1.02782 1.00697 0.96473 1.46190 1.19185 1.38259 1.35061 1.20272 0.80427 0.83423 0.83904 1.90700 1.60363 1.29547 1.58282 1.23511 1.05549 1.03066 0.98074 1.85426 1.08789 1.47122 1.41841 1.22864 1.05817 1.21058 1.18248 0.91048 1.24976 0.95375 0.95679 0.97514 1.70025 1.09324 1.30660 1.40249 0.86151 0.78516 0.79820 0.81191 1.19671 1.20599 1.20580 1.46021 1.67163 1.13905 1.09371 1.16496 0.77134 0.85636 0.81059 1.90872 1.50739 1.14069 1.84049 1.21943 1.12034 0.82854 0.97141 1.21961 0.99012 1.00993 0.91297 1.21850 1.07492 0.92786 1.02036 1.24410 1.00087 1.01160 0.81038 1.84007 1.64136 1.26280 1.31723 0.91882 0.91354 0.92399 0.90667 0.88508 0.91588 0.92624 0.91875 0.77604 0.89650 0.89507 0.92268 0.76495 0.82409 0.82596 0.77333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.25 9.48 37.16 0.35 -0.89 16 2 C 0.14 1.31 2.58 -67.94 -0.18 1.13 16 3 H 0.09 1.10 7.57 -51.93 -0.39 0.71 16 4 C -0.13 -0.96 4.43 -26.74 -0.12 -1.08 16 5 C 0.14 1.54 2.57 -67.93 -0.17 1.37 16 6 H 0.09 1.23 7.58 -51.93 -0.39 0.83 16 7 C -0.16 -1.65 9.48 37.16 0.35 -1.30 16 8 N -0.73 -9.36 3.80 -53.81 -0.20 -9.56 16 9 C 0.53 9.96 7.81 -10.99 -0.09 9.87 16 10 O -0.52 -11.77 15.52 5.55 0.09 -11.69 16 11 C -0.15 -3.08 6.16 36.00 0.22 -2.86 16 12 S -0.06 -1.59 20.57 -107.50 -2.21 -3.80 16 13 C -0.53 -14.99 9.50 30.94 0.29 -14.70 16 14 H 0.07 1.90 7.80 -52.49 -0.41 1.49 16 15 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 16 N -0.87 -26.16 13.22 55.49 0.73 -25.42 16 17 Si 0.92 21.15 29.55 -169.99 -5.02 16.12 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 21 N -0.71 -7.60 3.80 -55.12 -0.21 -7.81 16 22 C 0.61 8.71 7.75 -12.86 -0.10 8.61 16 23 O -0.52 -8.93 16.52 5.19 0.09 -8.84 16 24 C -0.09 -1.24 7.13 -36.80 -0.26 -1.50 16 25 C -0.11 -1.56 10.62 -39.39 -0.42 -1.98 16 26 C -0.22 -2.71 10.88 -39.89 -0.43 -3.15 16 27 C 0.00 0.03 12.08 29.63 0.36 0.39 16 28 O -0.17 -2.09 10.40 5.00 0.05 -2.04 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.39 3.92 6.51 -40.82 -0.27 3.66 16 38 H 0.09 1.67 8.14 -51.91 -0.42 1.25 16 39 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.40 3.54 6.26 -40.82 -0.26 3.29 16 42 H 0.16 2.08 8.06 -52.49 -0.42 1.65 16 43 H 0.16 1.56 8.06 -52.49 -0.42 1.13 16 44 H 0.21 1.65 8.06 -52.49 -0.42 1.22 16 LS Contribution 390.30 15.07 5.88 5.88 Total: -1.00 -36.94 390.30 -7.44 -44.38 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.35 Total: 6.87 kcal Atomic # 6 Polarization: -3.81 SS G_CDS: -0.29 Total: -4.10 kcal Atomic # 7 Polarization: -43.11 SS G_CDS: 0.32 Total: -42.79 kcal Atomic # 8 Polarization: -22.79 SS G_CDS: 0.22 Total: -22.56 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.59 SS G_CDS: -2.21 Total: -3.80 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.94 -7.44 -44.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001288504773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.466 kcal (2) G-P(sol) polarization free energy of solvation -36.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds