Wall clock time and date at job start Wed Apr 1 2020 00:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.46615 * 2 1 4 4 C 1.52990 * 109.47084 * 240.00246 * 2 1 3 5 5 C 1.53000 * 109.47144 * 174.99958 * 4 2 1 6 6 H 1.08997 * 109.47209 * 304.99742 * 5 4 2 7 7 C 1.53002 * 109.47049 * 184.99671 * 5 4 2 8 8 N 1.46496 * 109.47122 * 64.99871 * 5 4 2 9 9 C 1.34779 * 119.99988 * 204.99664 * 8 5 4 10 10 O 1.21285 * 119.99641 * 0.02562 * 9 8 5 11 11 C 1.50696 * 120.00071 * 179.97438 * 9 8 5 12 12 S 1.81007 * 109.47139 * 180.02562 * 11 9 8 13 13 C 1.76201 * 99.99840 * 179.97438 * 12 11 9 14 14 H 1.07991 * 120.00174 * 0.02562 * 13 12 11 15 15 C 1.38806 * 119.99788 * 179.97438 * 13 12 11 16 16 N 1.31632 * 119.99996 * 0.02562 * 15 13 12 17 17 Si 1.86789 * 119.99916 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.47440 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.47198 * 120.00117 * 17 15 13 20 20 H 1.48499 * 109.47320 * 239.99841 * 17 15 13 21 21 N 1.46499 * 109.47277 * 119.99916 * 2 1 3 22 22 C 1.34784 * 119.99971 * 275.00026 * 21 2 1 23 23 O 1.21695 * 119.99611 * 359.72672 * 22 21 2 24 24 C 1.46655 * 119.99522 * 179.97438 * 22 21 2 25 25 C 1.36546 * 125.98377 * 179.97438 * 24 22 21 26 26 C 1.40363 * 106.71054 * 179.97438 * 25 24 22 27 27 C 1.35137 * 107.11148 * 0.02562 * 26 25 24 28 28 O 1.33931 * 108.76864 * 359.76777 * 27 26 25 29 29 H 1.09005 * 109.47307 * 300.00029 * 1 2 3 30 30 H 1.09000 * 109.47576 * 59.99448 * 1 2 3 31 31 H 1.08995 * 109.46954 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47330 * 294.99933 * 4 2 1 33 33 H 1.08999 * 109.47417 * 54.99517 * 4 2 1 34 34 H 1.09006 * 109.47201 * 179.97438 * 7 5 4 35 35 H 1.08992 * 109.47496 * 299.99738 * 7 5 4 36 36 H 1.09003 * 109.47076 * 60.00481 * 7 5 4 37 37 H 0.97002 * 120.00455 * 25.00162 * 8 5 4 38 38 H 1.09005 * 109.47370 * 300.00058 * 11 9 8 39 39 H 1.08997 * 109.47464 * 60.00602 * 11 9 8 40 40 H 0.96993 * 120.00452 * 180.02562 * 16 15 13 41 41 H 0.96999 * 119.99984 * 94.99874 * 21 2 1 42 42 H 1.08002 * 126.64497 * 359.94496 * 25 24 22 43 43 H 1.07996 * 126.44793 * 179.97438 * 26 25 24 44 44 H 1.08000 * 125.61329 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 1 3.8570 0.4359 -1.2678 7 6 4.0644 -1.2249 -2.6240 8 7 4.1536 -1.3341 -0.1824 9 6 5.3748 -0.9910 0.2733 10 8 5.9859 -0.0851 -0.2530 11 6 5.9803 -1.7322 1.4373 12 16 7.6119 -1.0422 1.8090 13 6 8.0738 -2.0642 3.1680 14 1 7.4028 -2.8353 3.5164 15 6 9.3007 -1.8789 3.7901 16 7 10.1189 -0.9393 3.3652 17 14 9.7908 -2.9627 5.2303 18 1 8.7040 -3.9353 5.5103 19 1 11.0374 -3.6970 4.8956 20 1 10.0209 -2.1180 6.4298 21 7 2.0184 -0.6906 1.1962 22 6 2.1471 -0.0182 2.3572 23 8 1.8624 1.1638 2.4105 24 6 2.6355 -0.7097 3.5547 25 6 2.8126 -0.1507 4.7878 26 6 3.2910 -1.1687 5.6275 27 6 3.3843 -2.2902 4.8793 28 8 2.9840 -2.0108 3.6322 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7516 -1.7714 -1.2056 33 1 1.6053 -0.2617 -2.1369 34 1 5.1508 -1.1476 -2.6702 35 1 3.7723 -2.2740 -2.6699 36 1 3.6264 -0.6885 -3.4657 37 1 3.6648 -2.0584 0.2387 38 1 5.3349 -1.6283 2.3096 39 1 6.0810 -2.7874 1.1835 40 1 10.9764 -0.8100 3.7996 41 1 2.2491 -1.6317 1.1526 42 1 2.6219 0.8760 5.0636 43 1 3.5388 -1.0734 6.6743 44 1 3.7218 -3.2541 5.2305 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001288504773.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:13:28 Heat of formation + Delta-G solvation = -87.128491 kcal Electronic energy + Delta-G solvation = -28246.744141 eV Core-core repulsion = 24291.090389 eV Total energy + Delta-G solvation = -3955.653752 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.62309 -41.24599 -40.38426 -38.06346 -35.66159 -34.56674 -34.07784 -33.46172 -32.05065 -30.50580 -29.88090 -27.76874 -27.63875 -24.89476 -23.01046 -22.73619 -22.17929 -21.81817 -21.06631 -19.81636 -19.54884 -18.00910 -17.60353 -17.35449 -17.21129 -17.07276 -16.86787 -16.40110 -15.93517 -15.75769 -15.45977 -14.98512 -14.63699 -14.53659 -14.44021 -14.20702 -13.97971 -13.72945 -13.66260 -13.56261 -13.22894 -13.21209 -13.14115 -12.92581 -12.90861 -12.57012 -12.45908 -11.88097 -11.82331 -11.68452 -11.44132 -11.14782 -11.04221 -10.91944 -10.46608 -10.25691 -9.97681 -9.61135 -8.65754 -8.32881 -6.10859 0.03042 1.27332 1.42239 1.42845 1.48200 1.57817 1.62393 1.64331 2.08956 2.16053 2.27935 2.34728 3.01928 3.33312 3.50235 3.75221 3.83779 3.94472 3.98541 4.12203 4.14374 4.25045 4.37206 4.41435 4.45266 4.52439 4.62566 4.74204 4.77290 4.81740 4.87037 4.93485 4.95168 5.01974 5.15805 5.30732 5.34621 5.37464 5.40672 5.43245 5.56649 5.81159 6.21641 6.36103 6.46901 6.97510 7.08356 7.25536 8.76825 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010738 B = 0.004322 C = 0.003325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2607.015949 B = 6477.522020 C = 8420.188958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 H 0.063 0.937 4 C -0.118 4.118 5 C 0.137 3.863 6 H 0.057 0.943 7 C -0.157 4.157 8 N -0.705 5.705 9 C 0.533 3.467 10 O -0.565 6.565 11 C -0.124 4.124 12 S -0.154 6.154 13 C -0.538 4.538 14 H 0.085 0.915 15 C 0.013 3.987 16 N -0.914 5.914 17 Si 0.997 3.003 18 H -0.249 1.249 19 H -0.276 1.276 20 H -0.277 1.277 21 N -0.698 5.698 22 C 0.603 3.397 23 O -0.561 6.561 24 C -0.110 4.110 25 C -0.133 4.133 26 C -0.237 4.237 27 C 0.010 3.990 28 O -0.163 6.163 29 H 0.037 0.963 30 H 0.088 0.912 31 H 0.078 0.922 32 H 0.108 0.892 33 H 0.128 0.872 34 H 0.027 0.973 35 H 0.078 0.922 36 H 0.087 0.913 37 H 0.407 0.593 38 H 0.095 0.905 39 H 0.109 0.891 40 H 0.270 0.730 41 H 0.409 0.591 42 H 0.153 0.847 43 H 0.176 0.824 44 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.374 -8.069 -4.538 25.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.032 3.968 3 H 0.081 0.919 4 C -0.156 4.156 5 C 0.033 3.967 6 H 0.075 0.925 7 C -0.215 4.215 8 N -0.360 5.360 9 C 0.319 3.681 10 O -0.443 6.443 11 C -0.275 4.275 12 S 0.073 5.927 13 C -0.685 4.685 14 H 0.103 0.897 15 C -0.192 4.192 16 N -0.551 5.551 17 Si 0.819 3.181 18 H -0.172 1.172 19 H -0.202 1.202 20 H -0.202 1.202 21 N -0.350 5.350 22 C 0.390 3.610 23 O -0.442 6.442 24 C -0.161 4.161 25 C -0.153 4.153 26 C -0.256 4.256 27 C -0.060 4.060 28 O -0.058 6.058 29 H 0.056 0.944 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.146 0.854 34 H 0.046 0.954 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.245 0.755 38 H 0.114 0.886 39 H 0.128 0.872 40 H 0.079 0.921 41 H 0.247 0.753 42 H 0.170 0.830 43 H 0.193 0.807 44 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -22.479 -5.851 -5.698 23.917 hybrid contribution 0.280 -1.510 2.017 2.535 sum -22.199 -7.361 -3.681 23.676 Atomic orbital electron populations 1.22114 0.93048 1.03452 1.02655 1.21213 0.95337 0.96748 0.83464 0.91888 1.22241 0.91579 1.03804 0.97934 1.21132 0.93837 0.96144 0.85622 0.92496 1.22121 1.00366 1.02446 0.96539 1.45968 1.17060 1.38034 1.34931 1.20047 0.81853 0.82775 0.83440 1.90689 1.62140 1.31731 1.59778 1.23312 1.01132 1.03783 0.99322 1.85673 1.14602 1.49466 1.42927 1.23186 1.06352 1.21004 1.18007 0.89702 1.26134 0.95199 0.97111 1.00723 1.70202 1.09921 1.32861 1.42128 0.84928 0.78626 0.77885 0.76674 1.17229 1.20191 1.20212 1.46007 1.65923 1.14240 1.08832 1.16661 0.76984 0.85320 0.82016 1.90840 1.52812 1.15794 1.84789 1.21950 1.13289 0.83667 0.97240 1.22211 0.99484 1.01497 0.92147 1.22166 1.07760 0.92588 1.03062 1.25228 0.98210 1.02302 0.80215 1.83994 1.64063 1.25294 1.32454 0.94417 0.89273 0.90332 0.87348 0.85390 0.95399 0.90299 0.89382 0.75537 0.88632 0.87243 0.92147 0.75259 0.82953 0.80699 0.73529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.48 71.98 0.68 -1.31 16 2 C 0.14 2.29 2.58 44.99 0.12 2.41 16 3 H 0.06 1.50 7.57 -2.38 -0.02 1.48 16 4 C -0.12 -1.24 4.43 30.59 0.14 -1.11 16 5 C 0.14 2.75 2.57 44.99 0.12 2.86 16 6 H 0.06 1.58 7.58 -2.39 -0.02 1.56 16 7 C -0.16 -2.81 9.48 71.98 0.68 -2.13 16 8 N -0.70 -16.98 3.80 -442.54 -1.68 -18.66 16 9 C 0.53 20.00 7.81 87.66 0.68 20.68 16 10 O -0.57 -26.97 15.52 -3.05 -0.05 -27.02 16 11 C -0.12 -5.01 6.16 71.23 0.44 -4.57 16 12 S -0.15 -8.65 20.57 -56.49 -1.16 -9.81 16 13 C -0.54 -30.30 9.50 67.96 0.65 -29.66 16 14 H 0.08 4.38 7.80 -2.92 -0.02 4.36 16 15 C 0.01 0.72 5.49 84.86 0.47 1.18 16 16 N -0.91 -56.44 13.22 21.65 0.29 -56.15 16 17 Si 1.00 42.75 29.55 68.60 2.03 44.78 16 18 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 19 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 20 H -0.28 -11.61 7.11 99.48 0.71 -10.91 16 21 N -0.70 -14.06 3.80 -446.52 -1.70 -15.76 16 22 C 0.60 17.52 7.75 86.44 0.67 18.19 16 23 O -0.56 -20.35 16.52 -4.33 -0.07 -20.42 16 24 C -0.11 -3.10 7.13 24.07 0.17 -2.93 16 25 C -0.13 -3.76 10.62 22.39 0.24 -3.53 16 26 C -0.24 -5.50 10.88 22.07 0.24 -5.26 16 27 C 0.01 0.20 12.08 67.11 0.81 1.01 16 28 O -0.16 -3.80 10.40 -5.04 -0.05 -3.86 16 29 H 0.04 0.69 8.14 -2.38 -0.02 0.68 16 30 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.03 0.72 8.14 -2.38 -0.02 0.70 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.05 16 36 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.41 6.96 6.51 -92.71 -0.60 6.36 16 38 H 0.10 3.65 8.14 -2.39 -0.02 3.63 16 39 H 0.11 3.90 8.14 -2.40 -0.02 3.88 16 40 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 41 H 0.41 6.21 6.26 -92.71 -0.58 5.63 16 42 H 0.15 4.31 8.06 -2.91 -0.02 4.28 16 43 H 0.18 3.22 8.06 -2.91 -0.02 3.19 16 44 H 0.25 2.85 8.06 -2.91 -0.02 2.83 16 Total: -1.00 -87.16 390.30 3.54 -83.62 By element: Atomic # 1 Polarization: 27.58 SS G_CDS: -0.16 Total: 27.43 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: 6.10 Total: -4.15 kcal Atomic # 7 Polarization: -87.48 SS G_CDS: -3.09 Total: -90.57 kcal Atomic # 8 Polarization: -51.13 SS G_CDS: -0.17 Total: -51.30 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Atomic # 16 Polarization: -8.65 SS G_CDS: -1.16 Total: -9.81 kcal Total: -87.16 3.54 -83.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001288504773.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.510 kcal (2) G-P(sol) polarization free energy of solvation -87.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds