Wall clock time and date at job start Wed Apr 1 2020 00:10:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35648 * 117.00336 * 2 1 4 4 C 1.38638 * 120.14151 * 359.73079 * 3 2 1 5 5 C 1.38213 * 120.07301 * 179.74087 * 4 3 2 6 6 Cl 1.73604 * 119.81811 * 180.25290 * 5 4 3 7 7 C 1.38695 * 120.35916 * 0.50904 * 5 4 3 8 8 C 1.37731 * 120.29070 * 359.76842 * 7 5 4 9 9 C 1.39743 * 119.91334 * 359.97438 * 8 7 5 10 10 C 1.47483 * 120.17362 * 179.97438 * 9 8 7 11 11 O 1.21599 * 120.00135 * 180.02562 * 10 9 8 12 12 N 1.34776 * 120.00090 * 0.02562 * 10 9 8 13 13 C 1.46494 * 120.00225 * 180.02562 * 12 10 9 14 14 H 1.09003 * 109.47167 * 35.00514 * 13 12 10 15 15 C 1.53003 * 109.47496 * 275.00766 * 13 12 10 16 16 C 1.52997 * 109.47310 * 155.00531 * 13 12 10 17 17 C 1.53000 * 109.47067 * 295.00305 * 16 13 12 18 18 C 1.52997 * 109.47067 * 180.02562 * 17 16 13 19 19 N 1.46502 * 109.46988 * 179.97438 * 18 17 16 20 20 C 1.36941 * 120.00080 * 179.97438 * 19 18 17 21 21 H 1.07998 * 119.99679 * 0.02562 * 20 19 18 22 22 C 1.38809 * 120.00181 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00157 * 180.02562 * 22 20 19 24 24 Si 1.86797 * 119.99994 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47226 * 90.00109 * 24 22 20 26 26 H 1.48499 * 109.47457 * 210.00179 * 24 22 20 27 27 H 1.48505 * 109.47066 * 330.00244 * 24 22 20 28 28 H 1.09002 * 109.47382 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46938 * 59.99686 * 1 2 3 30 30 H 1.09004 * 109.46926 * 299.99807 * 1 2 3 31 31 H 1.08005 * 119.96530 * 359.97438 * 4 3 2 32 32 H 1.08001 * 119.85429 * 179.74235 * 7 5 4 33 33 H 1.07992 * 120.04274 * 179.97438 * 8 7 5 34 34 H 0.97006 * 119.99432 * 0.02562 * 12 10 9 35 35 H 1.08998 * 109.47842 * 179.97438 * 15 13 12 36 36 H 1.09003 * 109.46707 * 300.00029 * 15 13 12 37 37 H 1.09004 * 109.47292 * 59.98998 * 15 13 12 38 38 H 1.09003 * 109.46916 * 55.00134 * 16 13 12 39 39 H 1.09002 * 109.47184 * 175.00011 * 16 13 12 40 40 H 1.09003 * 109.47113 * 299.99708 * 17 16 13 41 41 H 1.08997 * 109.47352 * 59.99361 * 17 16 13 42 42 H 1.09001 * 109.47426 * 299.99950 * 18 17 16 43 43 H 1.09002 * 109.47184 * 59.99706 * 18 17 16 44 44 H 0.96999 * 120.00489 * 0.02562 * 19 18 17 45 45 H 0.96997 * 119.99784 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2086 0.0000 4 6 1.2928 2.3732 -0.0056 5 6 1.9218 3.6039 -0.0002 6 17 0.9735 5.0580 -0.0007 7 6 3.3065 3.6835 0.0002 8 6 4.0682 2.5360 0.0001 9 6 3.4446 1.2855 0.0000 10 6 4.2547 0.0531 -0.0007 11 8 3.7087 -1.0334 -0.0012 12 7 5.6002 0.1311 -0.0008 13 6 6.4049 -1.0930 -0.0021 14 1 5.9010 -1.8585 -0.5923 15 6 6.5801 -1.5898 1.4344 16 6 7.7775 -0.8005 -0.6114 17 6 7.6114 -0.4236 -2.0850 18 6 8.9840 -0.1317 -2.6945 19 7 8.8251 0.2286 -4.1056 20 6 9.9247 0.5344 -4.8623 21 1 10.9091 0.5096 -4.4189 22 6 9.7741 0.8762 -6.1992 23 7 10.8310 1.1696 -6.9266 24 14 8.0714 0.9184 -6.9663 25 1 7.4919 2.2768 -6.8107 26 1 8.1704 0.5849 -8.4100 27 1 7.1982 -0.0730 -6.2880 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 0.2141 2.3188 -0.0105 32 1 3.7895 4.6495 0.0003 33 1 5.1461 2.6026 0.0000 34 1 6.0357 0.9979 0.0000 35 1 7.1784 -2.5009 1.4335 36 1 7.0840 -0.8244 2.0246 37 1 5.6022 -1.7982 1.8686 38 1 8.2443 0.0260 -0.0754 39 1 8.4068 -1.6869 -0.5317 40 1 7.1446 -1.2500 -2.6210 41 1 6.9820 0.4627 -2.1647 42 1 9.4513 0.6945 -2.1586 43 1 9.6130 -1.0183 -2.6148 44 1 7.9409 0.2512 -4.5038 45 1 10.7257 1.4081 -7.8609 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330899327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:55 Heat of formation + Delta-G solvation = -50.055084 kcal Electronic energy + Delta-G solvation = -26734.471146 eV Core-core repulsion = 22778.381312 eV Total energy + Delta-G solvation = -3956.089834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.00438 -39.43793 -38.07013 -36.87835 -36.62925 -34.98915 -32.82286 -31.89105 -30.73965 -30.72149 -29.66114 -27.68937 -25.92121 -24.46203 -22.91364 -22.54897 -21.26687 -20.95379 -20.56128 -18.91978 -17.60684 -17.49251 -17.02472 -16.25173 -16.12323 -15.72410 -15.31163 -14.94390 -14.67064 -14.55707 -14.21997 -14.02652 -13.81890 -13.76893 -13.54572 -12.99299 -12.93199 -12.63102 -12.38437 -12.24250 -12.21197 -12.17951 -11.83042 -11.69172 -11.45967 -11.28631 -11.23502 -10.96717 -10.88926 -10.51611 -10.38470 -10.09704 -9.92617 -9.57804 -9.45088 -9.14584 -8.87597 -8.70750 -7.21196 -5.75637 -3.10815 0.25511 0.82617 1.54891 2.54165 2.80117 3.00057 3.38986 3.41807 3.42744 3.46655 4.16064 4.37164 4.49873 4.53540 4.60774 4.68025 4.73651 4.76493 4.94892 4.97828 5.01513 5.10625 5.15716 5.37258 5.43453 5.45581 5.54840 5.57492 5.61966 5.67940 5.71927 5.88216 5.94971 6.00429 6.03560 6.10445 6.15456 6.30655 6.44817 6.76478 6.79934 6.86157 7.40597 8.01154 8.15217 8.43848 9.23278 9.95955 10.15971 11.42922 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009311 B = 0.002766 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3006.418104 B =10120.596685 C =11751.440621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.273 6.273 3 C 0.198 3.802 4 C -0.215 4.215 5 C 0.029 3.971 6 Cl -0.060 7.060 7 C -0.156 4.156 8 C -0.033 4.033 9 C -0.167 4.167 10 C 0.561 3.439 11 O -0.518 6.518 12 N -0.720 5.720 13 C 0.143 3.857 14 H 0.090 0.910 15 C -0.162 4.162 16 C -0.123 4.123 17 C -0.130 4.130 18 C 0.157 3.843 19 N -0.758 5.758 20 C -0.244 4.244 21 H 0.090 0.910 22 C 0.003 3.997 23 N -0.935 5.935 24 Si 0.884 3.116 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 H 0.106 0.894 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.145 0.855 32 H 0.143 0.857 33 H 0.145 0.855 34 H 0.398 0.602 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.069 0.931 39 H 0.081 0.919 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.025 0.975 43 H 0.025 0.975 44 H 0.360 0.640 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.800 2.837 21.458 30.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.184 6.184 3 C 0.149 3.851 4 C -0.235 4.235 5 C 0.002 3.998 6 Cl -0.031 7.031 7 C -0.175 4.175 8 C -0.052 4.052 9 C -0.171 4.171 10 C 0.348 3.652 11 O -0.394 6.394 12 N -0.373 5.373 13 C 0.039 3.961 14 H 0.108 0.892 15 C -0.220 4.220 16 C -0.161 4.161 17 C -0.168 4.168 18 C 0.030 3.970 19 N -0.404 5.404 20 C -0.374 4.374 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.584 5.584 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.203 1.203 28 H 0.124 0.876 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.163 0.837 32 H 0.161 0.839 33 H 0.163 0.837 34 H 0.233 0.767 35 H 0.085 0.915 36 H 0.075 0.925 37 H 0.077 0.923 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.193 0.807 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -21.951 1.976 21.387 30.711 hybrid contribution -1.293 0.922 -0.762 1.762 sum -23.245 2.898 20.625 31.211 Atomic orbital electron populations 1.23239 0.78376 1.04714 1.01393 1.86418 1.21038 1.24635 1.86284 1.18837 0.90806 0.84595 0.90900 1.21073 1.01053 0.90324 1.11028 1.20862 0.92030 0.87409 0.99495 1.98398 1.72295 1.35904 1.96466 1.20915 0.91300 0.99925 1.05388 1.21174 1.00329 0.90062 0.93604 1.19514 0.90880 0.94481 1.12261 1.17837 0.82108 0.88387 0.76886 1.90828 1.71563 1.28491 1.48560 1.46009 1.05639 1.10046 1.75601 1.21046 0.91515 0.86837 0.96740 0.89239 1.22171 1.02198 1.01347 0.96310 1.21846 0.95227 1.02818 0.96228 1.21790 0.99004 1.01553 0.94466 1.20629 0.93715 0.97396 0.85275 1.42743 1.06014 1.84558 1.07045 1.19076 0.87926 1.38349 0.92010 0.89251 1.24678 0.96633 1.01612 0.96341 1.69705 1.27605 1.53257 1.07786 0.86542 0.85332 0.77864 0.78784 1.21077 1.21695 1.20326 0.87606 0.92326 0.92404 0.83715 0.83892 0.83739 0.76674 0.91490 0.92495 0.92274 0.91224 0.90013 0.91958 0.92123 0.95689 0.95669 0.80717 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.27 -3.17 8.57 -40.53 -0.35 -3.52 16 3 C 0.20 2.15 6.70 -38.71 -0.26 1.89 16 4 C -0.22 -1.88 8.80 -39.44 -0.35 -2.23 16 5 C 0.03 0.25 6.32 -39.42 -0.25 0.00 16 6 Cl -0.06 -0.47 28.94 -51.86 -1.50 -1.97 16 7 C -0.16 -1.25 9.80 -39.60 -0.39 -1.64 16 8 C -0.03 -0.28 9.53 -39.20 -0.37 -0.65 16 9 C -0.17 -1.84 5.89 -104.84 -0.62 -2.46 16 10 C 0.56 7.21 7.73 -12.49 -0.10 7.11 16 11 O -0.52 -8.44 14.82 -16.61 -0.25 -8.69 16 12 N -0.72 -7.57 4.48 -54.87 -0.25 -7.81 16 13 C 0.14 1.55 2.57 -67.93 -0.17 1.37 16 14 H 0.09 1.16 7.58 -51.93 -0.39 0.76 16 15 C -0.16 -1.54 9.48 37.16 0.35 -1.18 16 16 C -0.12 -1.33 4.75 -26.73 -0.13 -1.46 16 17 C -0.13 -1.90 5.22 -26.73 -0.14 -2.04 16 18 C 0.16 2.97 6.26 -4.04 -0.03 2.95 16 19 N -0.76 -18.35 5.41 -59.91 -0.32 -18.67 16 20 C -0.24 -7.02 10.47 -15.06 -0.16 -7.18 16 21 H 0.09 2.74 8.06 -52.49 -0.42 2.32 16 22 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 23 N -0.94 -29.74 13.97 55.49 0.78 -28.97 16 24 Si 0.88 22.52 27.73 -169.99 -4.71 17.81 16 25 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.28 -6.71 6.52 56.52 0.37 -6.34 16 28 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.32 7.65 -51.93 -0.40 -0.07 16 30 H 0.06 0.29 7.67 -51.93 -0.40 -0.11 16 31 H 0.15 0.97 6.30 -52.48 -0.33 0.64 16 32 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.15 0.86 6.40 -52.49 -0.34 0.52 16 34 H 0.40 3.27 6.63 -40.82 -0.27 3.00 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.06 0.87 7.75 -51.93 -0.40 0.47 16 42 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.36 8.57 5.53 -40.82 -0.23 8.34 16 45 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 LS Contribution 386.71 15.07 5.83 5.83 Total: -1.00 -35.77 386.71 -9.06 -44.83 By element: Atomic # 1 Polarization: 12.15 SS G_CDS: -6.57 Total: 5.58 kcal Atomic # 6 Polarization: -2.70 SS G_CDS: -1.71 Total: -4.41 kcal Atomic # 7 Polarization: -55.66 SS G_CDS: 0.21 Total: -55.46 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: -0.59 Total: -12.21 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -4.71 Total: 17.81 kcal Atomic # 17 Polarization: -0.47 SS G_CDS: -1.50 Total: -1.97 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -35.77 -9.06 -44.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330899327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.225 kcal (2) G-P(sol) polarization free energy of solvation -35.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds