Wall clock time and date at job start Wed Apr 1 2020 00:11:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 C 1.52999 * 109.47338 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47580 * 180.02562 * 6 5 4 8 8 C 1.36937 * 120.00699 * 180.02562 * 7 6 5 9 9 H 1.08009 * 119.99209 * 0.02562 * 8 7 6 10 10 C 1.38802 * 120.00542 * 179.97438 * 8 7 6 11 11 N 1.31623 * 119.99964 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99997 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47259 * 90.00067 * 12 10 8 14 14 H 1.48500 * 109.47163 * 210.00068 * 12 10 8 15 15 H 1.48502 * 109.47053 * 329.99513 * 12 10 8 16 16 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 17 17 C 1.34777 * 119.99525 * 274.99614 * 16 2 1 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 2 20 20 O 1.42899 * 109.47143 * 180.27800 * 19 17 16 21 21 C 1.35897 * 117.00375 * 179.97438 * 20 19 17 22 22 C 1.38766 * 120.04745 * 359.72919 * 21 20 19 23 23 C 1.38123 * 119.97157 * 179.74351 * 22 21 20 24 24 C 1.38269 * 120.06997 * 0.55046 * 23 22 21 25 25 C 1.38366 * 120.09324 * 359.70127 * 24 23 22 26 26 Cl 1.73607 * 119.98341 * 180.02562 * 25 24 23 27 27 C 1.38278 * 120.03297 * 0.02562 * 25 24 23 28 28 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 32 32 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 33 33 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 34 34 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 35 35 H 1.09003 * 109.47199 * 300.00414 * 6 5 4 36 36 H 1.09002 * 109.47200 * 60.00255 * 6 5 4 37 37 H 0.97009 * 120.00152 * 359.97438 * 7 6 5 38 38 H 0.97007 * 119.99851 * 179.97438 * 11 10 8 39 39 H 0.97000 * 120.00580 * 95.00360 * 16 2 1 40 40 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 41 41 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 42 42 H 1.08003 * 120.01625 * 0.02562 * 22 21 20 43 43 H 1.08000 * 119.96682 * 180.24630 * 23 22 21 44 44 H 1.08002 * 119.95517 * 179.71986 * 24 23 22 45 45 H 1.08001 * 120.03550 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0748 -1.3347 -2.5629 7 7 5.5349 -1.2318 -2.6244 8 6 6.2188 -1.8059 -3.6626 9 1 5.6815 -2.3343 -4.4364 10 6 7.6021 -1.7079 -3.7211 11 7 8.2593 -2.2602 -4.7188 12 14 8.5311 -0.7935 -2.3831 13 1 8.8924 -1.7390 -1.2966 14 1 9.7669 -0.2011 -2.9550 15 1 7.6726 0.2868 -1.8342 16 7 2.0184 -0.6908 1.1960 17 6 2.1472 -0.0185 2.3570 18 8 1.8583 1.1582 2.4118 19 6 2.6437 -0.7305 3.5889 20 8 2.6869 0.1863 4.6842 21 6 3.1152 -0.2994 5.8789 22 6 3.4810 -1.6329 5.9960 23 6 3.9212 -2.1236 7.2098 24 6 3.9869 -1.2904 8.3112 25 6 3.6178 0.0384 8.1989 26 17 3.7021 1.0822 9.5836 27 6 3.1819 0.5354 6.9844 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4262 35 1 3.7865 -2.3849 -2.5190 36 1 3.6402 -0.8754 -3.4508 37 1 6.0173 -0.7562 -1.9300 38 1 9.2261 -2.1915 -4.7599 39 1 2.2492 -1.6319 1.1524 40 1 1.9698 -1.5528 3.8298 41 1 3.6437 -1.1227 3.4038 42 1 3.4260 -2.2856 5.1373 43 1 4.2097 -3.1605 7.2998 44 1 4.3270 -1.6772 9.2605 45 1 2.8943 1.5727 6.8966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330977069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:12 Heat of formation + Delta-G solvation = -52.252118 kcal Electronic energy + Delta-G solvation = -25808.320621 eV Core-core repulsion = 21852.135516 eV Total energy + Delta-G solvation = -3956.185105 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.89674 -39.87725 -38.10086 -36.93649 -36.60887 -35.07950 -32.82419 -31.77050 -31.35541 -30.53107 -29.90857 -28.32696 -25.96267 -23.48390 -23.09470 -22.58660 -21.26215 -21.02066 -20.75460 -18.99096 -17.61848 -17.54179 -16.90119 -16.78159 -16.39797 -16.05901 -15.36423 -14.93031 -14.76604 -14.65351 -14.29534 -14.12105 -13.97781 -13.85340 -13.57024 -13.29932 -13.04556 -12.70587 -12.38391 -12.33627 -12.27803 -12.20388 -11.77126 -11.74019 -11.39316 -11.37519 -11.33028 -11.04445 -10.95155 -10.59406 -10.46631 -10.14889 -10.08998 -9.61896 -9.36682 -9.34364 -8.92020 -8.77950 -7.25745 -5.79361 -3.14985 0.61200 0.83509 1.54395 2.21925 2.26853 3.12062 3.28415 3.35188 3.38508 3.43479 4.13264 4.31531 4.42221 4.51710 4.54968 4.56864 4.60385 4.60595 4.75748 4.87773 4.90624 4.99048 5.27631 5.29894 5.34837 5.46692 5.50343 5.61217 5.62318 5.75522 5.77212 5.81558 5.86384 5.91982 5.98224 6.02006 6.05283 6.22376 6.26774 6.69721 6.73111 6.77511 7.17197 7.88979 7.96867 8.39847 9.18968 9.91538 10.11261 11.39012 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010223 B = 0.002082 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.375560 B =13443.743373 C =15423.379347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.090 0.910 4 C -0.123 4.123 5 C -0.130 4.130 6 C 0.157 3.843 7 N -0.758 5.758 8 C -0.245 4.245 9 H 0.090 0.910 10 C 0.003 3.997 11 N -0.934 5.934 12 Si 0.885 3.115 13 H -0.284 1.284 14 H -0.290 1.290 15 H -0.277 1.277 16 N -0.717 5.717 17 C 0.517 3.483 18 O -0.517 6.517 19 C 0.038 3.962 20 O -0.285 6.285 21 C 0.145 3.855 22 C -0.207 4.207 23 C -0.065 4.065 24 C -0.150 4.150 25 C 0.004 3.996 26 Cl -0.062 7.062 27 C -0.143 4.143 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.025 0.975 36 H 0.026 0.974 37 H 0.360 0.640 38 H 0.259 0.741 39 H 0.403 0.597 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.136 0.864 43 H 0.137 0.863 44 H 0.135 0.865 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.078 0.400 26.488 30.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.039 3.961 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.168 4.168 6 C 0.029 3.971 7 N -0.403 5.403 8 C -0.375 4.375 9 H 0.108 0.892 10 C -0.193 4.193 11 N -0.582 5.582 12 Si 0.716 3.284 13 H -0.211 1.211 14 H -0.217 1.217 15 H -0.203 1.203 16 N -0.371 5.371 17 C 0.301 3.699 18 O -0.391 6.391 19 C -0.041 4.041 20 O -0.196 6.196 21 C 0.099 3.901 22 C -0.225 4.225 23 C -0.083 4.083 24 C -0.169 4.169 25 C -0.022 4.022 26 Cl -0.033 7.033 27 C -0.162 4.162 28 H 0.087 0.913 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.089 0.911 32 H 0.101 0.899 33 H 0.081 0.919 34 H 0.078 0.922 35 H 0.043 0.957 36 H 0.044 0.956 37 H 0.193 0.807 38 H 0.070 0.930 39 H 0.237 0.763 40 H 0.113 0.887 41 H 0.116 0.884 42 H 0.154 0.846 43 H 0.155 0.845 44 H 0.153 0.847 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.304 1.444 26.367 31.034 hybrid contribution 1.044 -0.042 0.881 1.367 sum -15.261 1.403 27.248 31.262 Atomic orbital electron populations 1.22180 0.95129 1.02176 1.02656 1.21101 0.93837 0.97815 0.83356 0.89144 1.21852 0.96572 1.01040 0.96653 1.21794 0.94104 1.01460 0.99473 1.20628 0.84899 0.97071 0.94454 1.42734 1.01727 1.66961 1.28919 1.19069 0.89896 1.27375 1.01169 0.89247 1.24691 0.96216 1.00528 0.97853 1.69707 1.07327 1.49286 1.31892 0.86531 0.79770 0.79958 0.82166 1.21106 1.21670 1.20347 1.45944 1.67602 1.14258 1.09306 1.19914 0.78463 0.87488 0.84054 1.90766 1.48320 1.15476 1.84567 1.22569 1.03427 0.92502 0.85553 1.86166 1.80762 1.37195 1.15525 1.18797 0.94074 0.91922 0.85339 1.21418 1.06408 0.94678 1.00042 1.20925 0.96152 0.99905 0.91328 1.20999 1.03837 0.91764 1.00264 1.20574 1.01532 0.91726 0.88408 1.98390 1.96775 1.66709 1.41385 1.20219 1.05356 1.01200 0.89415 0.91284 0.92365 0.92254 0.91097 0.89868 0.91918 0.92174 0.95668 0.95631 0.80732 0.93047 0.76282 0.88680 0.88450 0.84604 0.84496 0.84666 0.83850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.39 9.48 37.16 0.35 -1.04 16 2 C 0.14 1.38 2.57 -67.93 -0.17 1.21 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.68 16 4 C -0.12 -1.22 4.75 -26.73 -0.13 -1.34 16 5 C -0.13 -1.78 5.22 -26.74 -0.14 -1.92 16 6 C 0.16 2.87 6.26 -4.04 -0.03 2.84 16 7 N -0.76 -17.91 5.41 -59.91 -0.32 -18.23 16 8 C -0.25 -6.96 10.47 -15.06 -0.16 -7.12 16 9 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 10 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 11 N -0.93 -29.37 13.97 55.49 0.78 -28.59 16 12 Si 0.89 22.17 27.74 -169.99 -4.71 17.45 16 13 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 14 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 15 H -0.28 -6.58 6.52 56.52 0.37 -6.21 16 16 N -0.72 -6.21 4.53 -53.80 -0.24 -6.46 16 17 C 0.52 5.57 7.87 -10.98 -0.09 5.49 16 18 O -0.52 -7.95 16.16 -14.36 -0.23 -8.18 16 19 C 0.04 0.30 5.22 36.01 0.19 0.49 16 20 O -0.28 -3.10 9.67 -39.33 -0.38 -3.48 16 21 C 0.14 1.36 6.69 -39.22 -0.26 1.10 16 22 C -0.21 -1.48 9.04 -39.43 -0.36 -1.83 16 23 C -0.06 -0.41 10.04 -39.61 -0.40 -0.81 16 24 C -0.15 -1.05 9.83 -39.52 -0.39 -1.44 16 25 C 0.00 0.04 6.32 -39.52 -0.25 -0.21 16 26 Cl -0.06 -0.50 28.95 -51.86 -1.50 -2.00 16 27 C -0.14 -1.34 9.77 -39.40 -0.38 -1.73 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 34 H 0.06 0.79 7.75 -51.92 -0.40 0.39 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.36 8.34 5.53 -40.82 -0.23 8.11 16 38 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 39 H 0.40 2.43 8.60 -40.82 -0.35 2.08 16 40 H 0.10 0.46 7.65 -51.92 -0.40 0.06 16 41 H 0.10 0.58 7.67 -51.93 -0.40 0.19 16 42 H 0.14 0.65 6.30 -52.48 -0.33 0.32 16 43 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 44 H 0.14 0.71 8.06 -52.49 -0.42 0.29 16 45 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 392.95 15.07 5.92 5.92 Total: -1.00 -35.68 392.95 -9.75 -45.43 By element: Atomic # 1 Polarization: 11.21 SS G_CDS: -6.74 Total: 4.47 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -2.31 Total: -6.32 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: 0.21 Total: -53.28 kcal Atomic # 8 Polarization: -11.05 SS G_CDS: -0.61 Total: -11.66 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -4.71 Total: 17.45 kcal Atomic # 17 Polarization: -0.50 SS G_CDS: -1.50 Total: -2.00 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.68 -9.75 -45.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330977069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.826 kcal (2) G-P(sol) polarization free energy of solvation -35.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.426 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds