Wall clock time and date at job start Wed Apr 1 2020 00:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 C 1.52999 * 109.47338 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47580 * 180.02562 * 6 5 4 8 8 C 1.36937 * 120.00699 * 180.02562 * 7 6 5 9 9 H 1.08009 * 119.99209 * 0.02562 * 8 7 6 10 10 C 1.38802 * 120.00542 * 179.97438 * 8 7 6 11 11 N 1.31623 * 119.99964 * 179.97438 * 10 8 7 12 12 Si 1.86800 * 119.99997 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47259 * 90.00067 * 12 10 8 14 14 H 1.48500 * 109.47163 * 210.00068 * 12 10 8 15 15 H 1.48502 * 109.47053 * 329.99513 * 12 10 8 16 16 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 17 17 C 1.34777 * 119.99525 * 274.99614 * 16 2 1 18 18 O 1.21283 * 120.00463 * 0.02562 * 17 16 2 19 19 C 1.50700 * 119.99675 * 179.72583 * 17 16 2 20 20 O 1.42899 * 109.47143 * 180.27800 * 19 17 16 21 21 C 1.35897 * 117.00375 * 179.97438 * 20 19 17 22 22 C 1.38766 * 120.04745 * 359.72919 * 21 20 19 23 23 C 1.38123 * 119.97157 * 179.74351 * 22 21 20 24 24 C 1.38269 * 120.06997 * 0.55046 * 23 22 21 25 25 C 1.38366 * 120.09324 * 359.70127 * 24 23 22 26 26 Cl 1.73607 * 119.98341 * 180.02562 * 25 24 23 27 27 C 1.38278 * 120.03297 * 0.02562 * 25 24 23 28 28 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 29 29 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 31 31 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 32 32 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 33 33 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 34 34 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 35 35 H 1.09003 * 109.47199 * 300.00414 * 6 5 4 36 36 H 1.09002 * 109.47200 * 60.00255 * 6 5 4 37 37 H 0.97009 * 120.00152 * 359.97438 * 7 6 5 38 38 H 0.97007 * 119.99851 * 179.97438 * 11 10 8 39 39 H 0.97000 * 120.00580 * 95.00360 * 16 2 1 40 40 H 1.09009 * 109.47352 * 300.27556 * 19 17 16 41 41 H 1.08998 * 109.47585 * 60.27844 * 19 17 16 42 42 H 1.08003 * 120.01625 * 0.02562 * 22 21 20 43 43 H 1.08000 * 119.96682 * 180.24630 * 23 22 21 44 44 H 1.08002 * 119.95517 * 179.71986 * 24 23 22 45 45 H 1.08001 * 120.03550 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0748 -1.3347 -2.5629 7 7 5.5349 -1.2318 -2.6244 8 6 6.2188 -1.8059 -3.6626 9 1 5.6815 -2.3343 -4.4364 10 6 7.6021 -1.7079 -3.7211 11 7 8.2593 -2.2602 -4.7188 12 14 8.5311 -0.7935 -2.3831 13 1 8.8924 -1.7390 -1.2966 14 1 9.7669 -0.2011 -2.9550 15 1 7.6726 0.2868 -1.8342 16 7 2.0184 -0.6908 1.1960 17 6 2.1472 -0.0185 2.3570 18 8 1.8583 1.1582 2.4118 19 6 2.6437 -0.7305 3.5889 20 8 2.6869 0.1863 4.6842 21 6 3.1152 -0.2994 5.8789 22 6 3.4810 -1.6329 5.9960 23 6 3.9212 -2.1236 7.2098 24 6 3.9869 -1.2904 8.3112 25 6 3.6178 0.0384 8.1989 26 17 3.7021 1.0822 9.5836 27 6 3.1819 0.5354 6.9844 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3632 0.5137 0.8900 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4262 35 1 3.7865 -2.3849 -2.5190 36 1 3.6402 -0.8754 -3.4508 37 1 6.0173 -0.7562 -1.9300 38 1 9.2261 -2.1915 -4.7599 39 1 2.2492 -1.6319 1.1524 40 1 1.9698 -1.5528 3.8298 41 1 3.6437 -1.1227 3.4038 42 1 3.4260 -2.2856 5.1373 43 1 4.2097 -3.1605 7.2998 44 1 4.3270 -1.6772 9.2605 45 1 2.8943 1.5727 6.8966 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330977069.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:11 Heat of formation + Delta-G solvation = -75.168049 kcal Electronic energy + Delta-G solvation = -25809.314330 eV Core-core repulsion = 21852.135516 eV Total energy + Delta-G solvation = -3957.178814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.55912 -40.62041 -38.74018 -37.94157 -37.26750 -36.60442 -34.26879 -33.05663 -32.11021 -31.38982 -30.94168 -28.95090 -27.36076 -24.55070 -23.94933 -23.50210 -22.54961 -22.00487 -21.55270 -19.62421 -19.58149 -18.34772 -17.61625 -17.41998 -17.00380 -16.78585 -16.56556 -15.99459 -15.88522 -15.73347 -15.62228 -15.04760 -14.94681 -14.65351 -14.57481 -14.32029 -13.98583 -13.86947 -13.57515 -13.49462 -13.09517 -12.84629 -12.83746 -12.80350 -12.48562 -12.32101 -12.12410 -12.04590 -11.95960 -11.91620 -11.87572 -11.72637 -11.54761 -10.97376 -10.94593 -10.15362 -9.93033 -9.35827 -9.29752 -8.04038 -5.37341 0.05791 0.27294 0.95351 1.36836 1.39998 1.47558 1.48647 1.57684 2.47013 2.57241 2.63887 3.27353 3.47480 3.56936 3.76335 3.88750 3.95338 4.05325 4.07078 4.09981 4.11589 4.18823 4.22828 4.39060 4.40055 4.56031 4.64977 4.75022 4.82257 4.86592 4.90948 5.00415 5.08647 5.13033 5.21894 5.30630 5.31242 5.34750 5.43431 5.48609 5.55517 5.75124 6.19160 6.20648 6.50375 7.07341 7.16963 7.84855 8.02391 9.17414 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010223 B = 0.002082 C = 0.001815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2738.375560 B =13443.743373 C =15423.379347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.145 3.855 3 H 0.064 0.936 4 C -0.110 4.110 5 C -0.119 4.119 6 C 0.151 3.849 7 N -0.763 5.763 8 C -0.236 4.236 9 H 0.057 0.943 10 C -0.067 4.067 11 N -0.983 5.983 12 Si 0.957 3.043 13 H -0.273 1.273 14 H -0.297 1.297 15 H -0.256 1.256 16 N -0.704 5.704 17 C 0.512 3.488 18 O -0.573 6.573 19 C 0.038 3.962 20 O -0.317 6.317 21 C 0.127 3.873 22 C -0.203 4.203 23 C -0.061 4.061 24 C -0.151 4.151 25 C -0.007 4.007 26 Cl -0.066 7.066 27 C -0.165 4.165 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.041 0.959 31 H 0.093 0.907 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.069 0.931 35 H 0.033 0.967 36 H 0.020 0.980 37 H 0.364 0.636 38 H 0.258 0.742 39 H 0.419 0.581 40 H 0.131 0.869 41 H 0.121 0.879 42 H 0.164 0.836 43 H 0.169 0.831 44 H 0.153 0.847 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.597 -1.177 28.312 32.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.082 0.918 4 C -0.149 4.149 5 C -0.157 4.157 6 C 0.025 3.975 7 N -0.408 5.408 8 C -0.367 4.367 9 H 0.075 0.925 10 C -0.258 4.258 11 N -0.634 5.634 12 Si 0.784 3.216 13 H -0.199 1.199 14 H -0.224 1.224 15 H -0.181 1.181 16 N -0.359 5.359 17 C 0.298 3.702 18 O -0.452 6.452 19 C -0.040 4.040 20 O -0.230 6.230 21 C 0.082 3.918 22 C -0.222 4.222 23 C -0.079 4.079 24 C -0.170 4.170 25 C -0.034 4.034 26 Cl -0.037 7.037 27 C -0.185 4.185 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.060 0.940 31 H 0.111 0.889 32 H 0.107 0.893 33 H 0.069 0.931 34 H 0.088 0.912 35 H 0.051 0.949 36 H 0.039 0.961 37 H 0.197 0.803 38 H 0.067 0.933 39 H 0.257 0.743 40 H 0.149 0.851 41 H 0.139 0.861 42 H 0.181 0.819 43 H 0.187 0.813 44 H 0.171 0.829 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -16.871 -0.164 28.209 32.870 hybrid contribution 1.123 0.383 0.240 1.210 sum -15.749 0.219 28.449 32.518 Atomic orbital electron populations 1.22111 0.93937 1.03210 1.02213 1.20975 0.94693 0.96599 0.83626 0.91756 1.21754 0.93635 1.02533 0.96936 1.21676 0.96628 1.00012 0.97337 1.20864 0.81973 0.98054 0.96604 1.42802 1.03860 1.66491 1.27678 1.19075 0.90154 1.26183 1.01301 0.92480 1.25548 0.97369 1.02254 1.00639 1.69890 1.07499 1.51563 1.34456 0.85381 0.77963 0.79133 0.79111 1.19928 1.22391 1.18078 1.45854 1.66608 1.14913 1.08480 1.20506 0.77510 0.86938 0.85221 1.90744 1.50947 1.17991 1.85493 1.22763 1.05419 0.92269 0.83562 1.86115 1.81349 1.38966 1.16544 1.18958 0.95103 0.93014 0.84757 1.21748 1.05205 0.93816 1.01384 1.21339 0.94851 1.01194 0.90516 1.21318 1.03059 0.91119 1.01524 1.20703 1.02210 0.92454 0.87994 1.98382 1.96830 1.67068 1.41450 1.20282 1.06704 1.01071 0.90417 0.90506 0.90513 0.93993 0.88862 0.89292 0.93096 0.91190 0.94943 0.96143 0.80263 0.93325 0.74343 0.85149 0.86095 0.81876 0.81327 0.82929 0.85145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.48 71.98 0.68 -1.67 16 2 C 0.15 2.54 2.57 44.99 0.12 2.66 16 3 H 0.06 1.50 7.58 -2.38 -0.02 1.49 16 4 C -0.11 -1.86 4.75 30.59 0.15 -1.72 16 5 C -0.12 -2.94 5.22 30.59 0.16 -2.78 16 6 C 0.15 5.24 6.26 86.38 0.54 5.78 16 7 N -0.76 -34.93 5.41 -343.46 -1.86 -36.79 16 8 C -0.24 -13.43 10.47 84.03 0.88 -12.55 16 9 H 0.06 3.54 8.06 -2.91 -0.02 3.52 16 10 C -0.07 -3.93 5.50 84.86 0.47 -3.46 16 11 N -0.98 -62.93 13.97 21.65 0.30 -62.63 16 12 Si 0.96 45.34 27.74 68.60 1.90 47.24 16 13 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 14 H -0.30 -14.33 7.11 99.48 0.71 -13.63 16 15 H -0.26 -11.08 6.52 99.48 0.65 -10.43 16 16 N -0.70 -10.45 4.53 -442.52 -2.00 -12.45 16 17 C 0.51 10.36 7.87 87.66 0.69 11.05 16 18 O -0.57 -17.90 16.16 16.00 0.26 -17.65 16 19 C 0.04 0.50 5.22 71.24 0.37 0.87 16 20 O -0.32 -6.72 9.67 -73.36 -0.71 -7.43 16 21 C 0.13 2.27 6.69 22.50 0.15 2.42 16 22 C -0.20 -2.29 9.04 22.37 0.20 -2.09 16 23 C -0.06 -0.57 10.04 22.25 0.22 -0.34 16 24 C -0.15 -1.82 9.83 22.31 0.22 -1.60 16 25 C -0.01 -0.11 6.32 22.31 0.14 0.03 16 26 Cl -0.07 -1.06 28.95 -2.72 -0.08 -1.14 16 27 C -0.17 -3.17 9.77 22.39 0.22 -2.95 16 28 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 29 H 0.08 0.87 8.14 -2.39 -0.02 0.86 16 30 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.07 1.61 7.75 -2.38 -0.02 1.59 16 35 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.36 15.99 5.53 -92.70 -0.51 15.47 16 38 H 0.26 15.70 8.31 -92.70 -0.77 14.93 16 39 H 0.42 3.45 8.60 -92.71 -0.80 2.65 16 40 H 0.13 0.76 7.65 -2.38 -0.02 0.74 16 41 H 0.12 1.02 7.67 -2.39 -0.02 1.00 16 42 H 0.16 0.82 6.30 -2.91 -0.02 0.81 16 43 H 0.17 0.47 8.06 -2.91 -0.02 0.45 16 44 H 0.15 1.22 8.06 -2.91 -0.02 1.20 16 45 H 0.13 2.66 8.06 -2.91 -0.02 2.64 16 Total: -1.00 -80.66 392.95 2.66 -78.00 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -0.36 Total: 19.19 kcal Atomic # 6 Polarization: -11.55 SS G_CDS: 5.21 Total: -6.34 kcal Atomic # 7 Polarization: -108.32 SS G_CDS: -3.56 Total: -111.87 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.45 Total: -25.07 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 1.90 Total: 47.24 kcal Atomic # 17 Polarization: -1.06 SS G_CDS: -0.08 Total: -1.14 kcal Total: -80.66 2.66 -78.00 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330977069.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.832 kcal (2) G-P(sol) polarization free energy of solvation -80.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds