Wall clock time and date at job start Wed Apr 1 2020 00:04:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.46980 * 2 1 4 4 C 1.50699 * 109.46939 * 240.00537 * 2 1 3 5 5 O 1.21280 * 120.00304 * 239.99876 * 4 2 1 6 6 N 1.34779 * 120.00239 * 59.99856 * 4 2 1 7 7 C 1.46499 * 119.99783 * 359.97438 * 6 4 2 8 8 C 1.46496 * 120.00428 * 180.02562 * 6 4 2 9 9 C 1.53003 * 109.47103 * 269.99934 * 8 6 4 10 10 H 1.09000 * 109.46939 * 305.00302 * 9 8 6 11 11 O 1.42907 * 109.46997 * 64.99907 * 9 8 6 12 12 C 1.52996 * 109.47301 * 184.99639 * 9 8 6 13 13 N 1.46498 * 109.47059 * 179.97438 * 12 9 8 14 14 C 1.36943 * 119.99752 * 179.72430 * 13 12 9 15 15 H 1.08002 * 119.99793 * 0.27665 * 14 13 12 16 16 C 1.38811 * 120.00012 * 180.27737 * 14 13 12 17 17 N 1.31611 * 120.00081 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99814 * 0.02562 * 16 14 13 19 19 H 1.48501 * 109.47483 * 90.00178 * 18 16 14 20 20 H 1.48498 * 109.47011 * 210.00042 * 18 16 14 21 21 H 1.48502 * 109.47495 * 329.99664 * 18 16 14 22 22 C 1.50698 * 109.47501 * 120.00564 * 2 1 3 23 23 C 1.38263 * 119.99176 * 59.71905 * 22 2 1 24 24 C 1.38227 * 120.02468 * 179.76824 * 23 22 2 25 25 C 1.38241 * 120.01206 * 0.51000 * 24 23 22 26 26 C 1.38332 * 119.98769 * 359.75065 * 25 24 23 27 27 Cl 1.73598 * 120.01585 * 180.02562 * 26 25 24 28 28 C 1.38200 * 119.99260 * 240.00020 * 22 2 1 29 29 H 1.09004 * 109.46843 * 299.99212 * 1 2 3 30 30 H 1.08989 * 109.47356 * 59.99366 * 1 2 3 31 31 H 1.09000 * 109.46980 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47374 * 270.00305 * 7 6 4 33 33 H 1.09008 * 109.47042 * 30.00322 * 7 6 4 34 34 H 1.08997 * 109.47131 * 149.99833 * 7 6 4 35 35 H 1.08992 * 109.47604 * 149.99752 * 8 6 4 36 36 H 1.09003 * 109.46647 * 29.99409 * 8 6 4 37 37 H 0.96694 * 114.00447 * 59.99736 * 11 9 8 38 38 H 1.09004 * 109.47066 * 60.00027 * 12 9 8 39 39 H 1.08994 * 109.46974 * 300.00175 * 12 9 8 40 40 H 0.97001 * 120.00384 * 0.02562 * 13 12 9 41 41 H 0.97008 * 120.00329 * 179.97438 * 17 16 14 42 42 H 1.07990 * 119.98899 * 0.02562 * 23 22 2 43 43 H 1.08000 * 119.99492 * 180.25801 * 24 23 22 44 44 H 1.07991 * 120.00856 * 179.72248 * 25 24 23 45 45 H 1.07995 * 120.00782 * 0.02562 * 28 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.7295 -1.6964 -1.1194 6 7 1.7067 -0.2498 -2.4546 7 6 0.8639 0.9410 -2.5889 8 6 2.1944 -0.9405 -3.6509 9 6 3.5424 -0.3486 -4.0676 10 1 3.4412 0.7287 -4.1986 11 8 4.5138 -0.6160 -3.0541 12 6 3.9925 -0.9828 -5.3852 13 7 5.2828 -0.4156 -5.7844 14 6 5.8893 -0.8383 -6.9372 15 1 5.4141 -1.5866 -7.5542 16 6 7.1147 -0.3051 -7.3126 17 7 7.6973 -0.7110 -8.4207 18 14 7.9368 0.9886 -6.2449 19 1 8.8124 0.3234 -5.2469 20 1 8.7536 1.8885 -7.0982 21 1 6.8979 1.7826 -5.5408 22 6 2.0324 -0.7105 1.2303 23 6 1.6936 -2.0325 1.4518 24 6 2.1580 -2.6863 2.5777 25 6 2.9529 -2.0155 3.4883 26 6 3.2878 -0.6912 3.2700 27 17 4.2865 0.1517 4.4126 28 6 2.8270 -0.0388 2.1400 29 1 -0.3633 0.5137 0.8901 30 1 -0.3633 0.5139 -0.8898 31 1 -0.3633 -1.0277 0.0005 32 1 -0.1839 0.6428 -2.6224 33 1 1.0271 1.5997 -1.7358 34 1 1.1216 1.4667 -3.5083 35 1 1.4764 -0.8150 -4.4612 36 1 2.3152 -2.0018 -3.4336 37 1 4.6558 -1.5572 -2.8838 38 1 3.2515 -0.7789 -6.1583 39 1 4.0936 -2.0601 -5.2540 40 1 5.7097 0.2562 -5.2301 41 1 8.5535 -0.3381 -8.6833 42 1 1.0693 -2.5558 0.7428 43 1 1.8964 -3.7202 2.7481 44 1 3.3120 -2.5250 4.3701 45 1 3.0875 0.9953 1.9694 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332606007.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:04:20 Heat of formation + Delta-G solvation = -47.348545 kcal Electronic energy + Delta-G solvation = -27316.626090 eV Core-core repulsion = 23360.653620 eV Total energy + Delta-G solvation = -3955.972470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.77190 -39.26351 -37.47498 -36.70398 -35.53962 -34.41101 -34.04831 -31.46926 -31.09475 -30.27512 -29.20834 -27.25010 -26.01266 -24.55770 -22.98369 -22.71648 -21.54557 -21.18574 -19.36986 -17.69987 -17.42260 -17.27280 -16.52357 -16.17980 -15.82521 -15.44359 -15.18599 -14.92845 -14.50521 -14.28953 -14.16107 -13.85333 -13.74706 -13.47128 -13.40098 -13.26594 -12.90661 -12.65038 -12.43598 -12.28927 -12.15778 -12.00226 -11.71665 -11.59054 -11.53670 -11.46972 -11.21329 -11.03558 -10.84258 -10.79640 -10.17434 -9.94011 -9.71533 -9.55941 -9.17018 -8.90131 -8.89901 -8.61106 -7.22044 -5.75595 -3.10915 0.90838 0.98404 1.86463 2.54227 2.80432 3.38476 3.42625 3.48376 3.49879 4.12231 4.26412 4.51416 4.62713 4.66128 4.72058 4.75250 4.78578 4.84067 4.88981 4.98546 5.09956 5.11741 5.17628 5.29349 5.30458 5.40769 5.48528 5.48873 5.55873 5.58423 5.61823 5.70852 5.85117 5.92043 5.92514 6.06471 6.21446 6.33025 6.43921 6.51028 6.63220 7.21892 7.98130 8.06105 8.11289 8.43468 9.23579 9.96020 10.16349 11.42606 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012834 B = 0.002623 C = 0.002348 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.186898 B =10672.223058 C =11922.446006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.070 4.070 3 H 0.105 0.895 4 C 0.524 3.476 5 O -0.522 6.522 6 N -0.610 5.610 7 C 0.073 3.927 8 C 0.086 3.914 9 C 0.082 3.918 10 H 0.094 0.906 11 O -0.551 6.551 12 C 0.130 3.870 13 N -0.749 5.749 14 C -0.246 4.246 15 H 0.089 0.911 16 C 0.005 3.995 17 N -0.934 5.934 18 Si 0.887 3.113 19 H -0.283 1.283 20 H -0.292 1.292 21 H -0.277 1.277 22 C -0.051 4.051 23 C -0.079 4.079 24 C -0.108 4.108 25 C -0.111 4.111 26 C -0.036 4.036 27 Cl -0.074 7.074 28 C -0.102 4.102 29 H 0.069 0.931 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.377 0.623 38 H 0.033 0.967 39 H 0.029 0.971 40 H 0.366 0.634 41 H 0.260 0.740 42 H 0.125 0.875 43 H 0.131 0.869 44 H 0.131 0.869 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.510 1.841 24.648 32.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.092 4.092 3 H 0.123 0.877 4 C 0.311 3.689 5 O -0.396 6.396 6 N -0.343 5.343 7 C -0.070 4.070 8 C -0.037 4.037 9 C 0.021 3.979 10 H 0.112 0.888 11 O -0.356 6.356 12 C 0.001 3.999 13 N -0.395 5.395 14 C -0.376 4.376 15 H 0.107 0.893 16 C -0.191 4.191 17 N -0.582 5.582 18 Si 0.718 3.282 19 H -0.210 1.210 20 H -0.218 1.218 21 H -0.203 1.203 22 C -0.052 4.052 23 C -0.098 4.098 24 C -0.127 4.127 25 C -0.130 4.130 26 C -0.062 4.062 27 Cl -0.046 7.046 28 C -0.120 4.120 29 H 0.088 0.912 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.105 0.895 36 H 0.107 0.893 37 H 0.225 0.775 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.200 0.800 41 H 0.069 0.931 42 H 0.143 0.857 43 H 0.149 0.851 44 H 0.149 0.851 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -19.979 1.913 24.602 31.750 hybrid contribution 0.802 0.522 0.547 1.102 sum -19.177 2.435 25.149 31.719 Atomic orbital electron populations 1.22079 0.91893 1.03407 1.03701 1.20264 0.97786 1.00361 0.90763 0.87684 1.20254 0.80037 0.84643 0.83946 1.90701 1.36671 1.26252 1.86023 1.47658 1.51413 1.29396 1.05822 1.22003 0.94239 0.87354 1.03413 1.22238 0.96660 0.98180 0.86645 1.22539 0.86852 1.00353 0.88137 0.88830 1.86514 1.60934 1.30585 1.57587 1.21206 0.89244 0.96394 0.93013 1.42579 1.20829 1.49050 1.27080 1.19049 1.01395 1.19237 0.97910 0.89321 1.24661 0.97341 0.99811 0.97269 1.69706 1.18108 1.46342 1.24074 0.86499 0.79528 0.82181 0.80019 1.20977 1.21816 1.20336 1.19214 0.97339 0.94329 0.94330 1.21002 0.98707 0.93636 0.96407 1.21081 0.97536 1.00030 0.94024 1.21045 0.98862 0.92622 1.00449 1.20820 0.98594 0.93606 0.93194 1.98371 1.68362 1.77930 1.59901 1.20885 0.97714 1.00497 0.92937 0.91212 0.90420 0.91820 0.92103 0.90868 0.90726 0.89484 0.89296 0.77546 0.94963 0.95311 0.80038 0.93050 0.85693 0.85081 0.85096 0.85079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 8.64 37.16 0.32 -0.57 16 2 C -0.07 -0.60 2.10 -92.93 -0.19 -0.80 16 3 H 0.11 0.79 7.14 -51.93 -0.37 0.42 16 4 C 0.52 6.11 6.58 -10.99 -0.07 6.04 16 5 O -0.52 -7.90 13.68 -2.22 -0.03 -7.93 16 6 N -0.61 -6.25 2.86 -181.58 -0.52 -6.77 16 7 C 0.07 0.48 8.80 59.85 0.53 1.01 16 8 C 0.09 1.01 5.11 -4.04 -0.02 0.99 16 9 C 0.08 1.26 3.30 -26.73 -0.09 1.17 16 10 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 11 O -0.55 -9.77 11.95 -43.01 -0.51 -10.28 16 12 C 0.13 2.46 5.92 -4.04 -0.02 2.44 16 13 N -0.75 -18.41 5.30 -59.91 -0.32 -18.72 16 14 C -0.25 -7.15 10.47 -15.06 -0.16 -7.31 16 15 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 16 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 17 N -0.93 -29.92 13.97 55.49 0.78 -29.15 16 18 Si 0.89 23.13 27.74 -169.99 -4.71 18.41 16 19 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 20 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 21 H -0.28 -6.90 6.52 56.52 0.37 -6.53 16 22 C -0.05 -0.51 4.39 -104.63 -0.46 -0.97 16 23 C -0.08 -0.78 7.94 -39.58 -0.31 -1.09 16 24 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 25 C -0.11 -1.02 9.83 -39.55 -0.39 -1.41 16 26 C -0.04 -0.36 6.32 -39.50 -0.25 -0.61 16 27 Cl -0.07 -0.72 28.96 -51.86 -1.50 -2.22 16 28 C -0.10 -1.02 9.46 -39.54 -0.37 -1.40 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.08 0.34 4.53 -51.94 -0.24 0.11 16 31 H 0.06 0.39 7.37 -51.93 -0.38 0.01 16 32 H 0.06 0.28 6.95 -51.93 -0.36 -0.08 16 33 H 0.07 0.38 6.01 -51.92 -0.31 0.07 16 34 H 0.07 0.48 8.07 -51.93 -0.42 0.06 16 35 H 0.09 0.83 8.07 -51.93 -0.42 0.41 16 36 H 0.09 1.12 7.42 -51.93 -0.39 0.74 16 37 H 0.38 6.32 8.75 45.56 0.40 6.71 16 38 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.37 9.11 5.41 -40.82 -0.22 8.89 16 41 H 0.26 7.90 8.31 -40.82 -0.34 7.56 16 42 H 0.13 1.16 7.51 -52.49 -0.39 0.76 16 43 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 44 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 45 H 0.13 1.16 7.95 -52.49 -0.42 0.74 16 LS Contribution 379.81 15.07 5.72 5.72 Total: -1.00 -35.81 379.81 -8.73 -44.55 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -5.65 Total: 10.20 kcal Atomic # 6 Polarization: -1.82 SS G_CDS: -1.99 Total: -3.81 kcal Atomic # 7 Polarization: -54.58 SS G_CDS: -0.06 Total: -54.64 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.54 Total: -18.21 kcal Atomic # 14 Polarization: 23.13 SS G_CDS: -4.71 Total: 18.41 kcal Atomic # 17 Polarization: -0.72 SS G_CDS: -1.50 Total: -2.22 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.81 -8.73 -44.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332606007.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.801 kcal (2) G-P(sol) polarization free energy of solvation -35.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.614 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds