Wall clock time and date at job start Wed Apr 1 2020 00:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46811 * 2 1 4 4 C 1.52997 * 109.47208 * 240.00060 * 2 1 3 5 5 C 1.53000 * 109.47230 * 174.99905 * 4 2 1 6 6 S 1.81406 * 109.47320 * 179.97438 * 5 4 2 7 7 C 1.81394 * 101.92175 * 179.97438 * 6 5 4 8 8 O 1.42094 * 108.57593 * 294.49043 * 6 5 4 9 9 O 1.42097 * 108.57529 * 65.51356 * 6 5 4 10 10 N 1.46504 * 109.46951 * 119.99826 * 2 1 3 11 11 C 1.34773 * 119.99944 * 274.99800 * 10 2 1 12 12 O 1.21582 * 120.00414 * 0.27886 * 11 10 2 13 13 N 1.34778 * 119.99615 * 180.02562 * 11 10 2 14 14 C 1.39960 * 119.99780 * 174.88176 * 13 11 10 15 15 C 1.39289 * 119.94335 * 146.39348 * 14 13 11 16 16 C 1.38494 * 120.42753 * 179.97438 * 15 14 13 17 17 C 1.37684 * 120.31998 * 0.02562 * 16 15 14 18 18 C 1.40735 * 119.88476 * 0.02562 * 17 16 15 19 19 C 1.41405 * 120.21155 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99886 * 151.67820 * 19 18 17 21 21 C 1.39935 * 119.99739 * 331.67077 * 19 18 17 22 22 N 1.30827 * 119.99832 * 348.99389 * 21 19 18 23 23 Si 1.86803 * 119.99882 * 168.99494 * 21 19 18 24 24 H 1.48506 * 109.46788 * 60.00410 * 23 21 19 25 25 H 1.48497 * 109.46875 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47128 * 300.00304 * 23 21 19 27 27 C 1.38227 * 119.94930 * 326.12760 * 14 13 11 28 28 H 1.08997 * 109.46957 * 60.00337 * 1 2 3 29 29 H 1.09002 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46952 * 299.99985 * 1 2 3 31 31 H 1.09005 * 109.47308 * 294.99990 * 4 2 1 32 32 H 1.09001 * 109.47372 * 54.99900 * 4 2 1 33 33 H 1.08997 * 109.47182 * 299.99961 * 5 4 2 34 34 H 1.09001 * 109.46938 * 60.00291 * 5 4 2 35 35 H 1.09001 * 109.47179 * 59.99863 * 7 6 5 36 36 H 1.08995 * 109.47336 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47372 * 300.00037 * 7 6 5 38 38 H 0.97000 * 119.99569 * 95.00885 * 10 2 1 39 39 H 0.97001 * 120.00729 * 354.88277 * 13 11 10 40 40 H 1.08000 * 119.78918 * 0.02562 * 15 14 13 41 41 H 1.07999 * 119.83432 * 180.02562 * 16 15 14 42 42 H 1.07997 * 120.05605 * 179.97438 * 17 16 15 43 43 H 0.96999 * 119.99639 * 179.97438 * 22 21 19 44 44 H 1.08004 * 120.15723 * 359.97359 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 16 4.1696 -1.4690 -2.7944 7 6 5.9614 -1.2162 -2.6678 8 8 3.8969 -2.8569 -2.6583 9 8 3.6955 -0.7780 -3.9420 10 7 2.0183 -0.6906 1.1962 11 6 2.1470 -0.0182 2.3571 12 8 1.8531 1.1602 2.4130 13 7 2.5968 -0.6535 3.4575 14 6 2.8324 0.0668 4.6341 15 6 2.6093 -0.5315 5.8720 16 6 2.8397 0.1718 7.0427 17 6 3.2917 1.4714 6.9952 18 6 3.5205 2.0893 5.7517 19 6 3.9852 3.4236 5.6949 20 1 4.5791 3.7533 4.8553 21 6 3.6754 4.3169 6.7266 22 7 2.7863 3.9907 7.6292 23 14 4.5314 5.9749 6.8150 24 1 4.2484 6.7446 5.5769 25 1 4.0304 6.7284 7.9924 26 1 5.9963 5.7693 6.9461 27 6 3.2914 1.3689 4.5660 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -1.7715 -1.2056 32 1 1.6054 -0.2617 -2.1370 33 1 3.8532 0.4370 -1.3573 34 1 3.9994 -1.0728 -0.4260 35 1 6.3259 -1.6573 -1.7400 36 1 6.4561 -1.6909 -3.5151 37 1 6.1789 -0.1481 -2.6723 38 1 2.2491 -1.6317 1.1526 39 1 2.7571 -1.6098 3.4340 40 1 2.2552 -1.5507 5.9193 41 1 2.6639 -0.3016 7.9973 42 1 3.4695 2.0160 7.9107 43 1 2.5718 4.6098 8.3445 44 1 3.4691 1.8320 3.6066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364368270.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:43 Heat of formation + Delta-G solvation = -82.615533 kcal Electronic energy + Delta-G solvation = -26863.173254 eV Core-core repulsion = 22907.715199 eV Total energy + Delta-G solvation = -3955.458055 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.08931 -37.76065 -37.34161 -36.51420 -36.30670 -34.36389 -33.13119 -32.42405 -30.35985 -29.84556 -29.78679 -27.76266 -25.27449 -24.67317 -22.36928 -21.02834 -20.71954 -20.10317 -19.23024 -18.13290 -17.63099 -17.00082 -16.62280 -16.39349 -16.04047 -15.49383 -14.93516 -14.86425 -14.51714 -14.39518 -14.11292 -13.80326 -13.67141 -13.61237 -13.19647 -13.00971 -12.82317 -12.45329 -12.41983 -12.35652 -12.17216 -12.03318 -11.85358 -11.69040 -11.47060 -11.30393 -11.22225 -11.10009 -10.65686 -10.64316 -10.48857 -10.15650 -9.75373 -9.57776 -9.21352 -8.97045 -8.90005 -7.39557 -6.85141 -6.64031 -4.32697 -0.41941 2.33195 2.74885 2.87316 3.01508 3.10145 3.13440 3.20681 3.23011 3.61385 3.70615 3.99001 4.13654 4.27539 4.37051 4.46537 4.54184 4.61968 4.70641 5.06330 5.11992 5.22945 5.24255 5.35594 5.50743 5.62855 5.73306 5.89681 6.17906 6.24427 6.40324 6.58077 6.78144 6.80289 7.05809 7.11237 7.27258 7.36381 7.70484 7.82961 8.01565 8.11772 8.27781 8.44091 8.68995 8.92387 8.99130 9.05900 10.29203 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.002429 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.325325 B =11526.075260 C =12218.915794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.169 3.831 3 H 0.095 0.905 4 C -0.118 4.118 5 C -0.610 4.610 6 S 2.421 3.579 7 C -0.657 4.657 8 O -0.941 6.941 9 O -0.941 6.941 10 N -0.749 5.749 11 C 0.697 3.303 12 O -0.561 6.561 13 N -0.682 5.682 14 C 0.167 3.833 15 C -0.261 4.261 16 C -0.094 4.094 17 C -0.170 4.170 18 C 0.120 3.880 19 C -0.459 4.459 20 H 0.075 0.925 21 C 0.073 3.927 22 N -0.801 5.801 23 Si 0.911 3.089 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.265 1.265 27 C -0.208 4.208 28 H 0.065 0.935 29 H 0.056 0.944 30 H 0.068 0.932 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.138 0.862 34 H 0.134 0.866 35 H 0.129 0.871 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.391 0.609 39 H 0.393 0.607 40 H 0.088 0.912 41 H 0.091 0.909 42 H 0.121 0.879 43 H 0.279 0.721 44 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.910 -10.609 -16.397 19.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.063 3.937 3 H 0.113 0.887 4 C -0.157 4.157 5 C -0.740 4.740 6 S 2.603 3.397 7 C -0.807 4.807 8 O -0.939 6.939 9 O -0.938 6.938 10 N -0.406 5.406 11 C 0.397 3.603 12 O -0.436 6.436 13 N -0.329 5.329 14 C 0.075 3.925 15 C -0.282 4.282 16 C -0.113 4.113 17 C -0.189 4.189 18 C 0.117 3.883 19 C -0.489 4.489 20 H 0.093 0.907 21 C -0.143 4.143 22 N -0.428 5.428 23 Si 0.736 3.264 24 H -0.191 1.191 25 H -0.204 1.204 26 H -0.190 1.190 27 C -0.229 4.229 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.115 0.885 33 H 0.156 0.844 34 H 0.152 0.848 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.225 0.775 39 H 0.227 0.773 40 H 0.106 0.894 41 H 0.109 0.891 42 H 0.139 0.861 43 H 0.090 0.910 44 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.061 -9.839 -16.848 19.619 hybrid contribution 0.955 0.227 0.758 1.240 sum 3.016 -9.612 -16.090 18.984 Atomic orbital electron populations 1.22237 0.95040 1.02231 1.03117 1.20669 0.93938 0.97331 0.81788 0.88717 1.21675 0.90558 1.03184 1.00270 1.30358 1.06919 1.15520 1.21160 1.07814 0.78380 0.76048 0.77414 1.30270 1.26347 1.12150 1.11898 1.93600 1.83367 1.30133 1.86752 1.93603 1.78614 1.75658 1.45947 1.45268 1.72942 1.13397 1.09030 1.15992 0.78628 0.85431 0.80238 1.91002 1.54790 1.14076 1.83755 1.42618 1.69171 1.10853 1.10253 1.17218 0.99801 0.92584 0.82889 1.20031 1.17050 0.99798 0.91360 1.20470 1.00209 0.95141 0.95442 1.21396 1.05548 0.93223 0.98770 1.17496 0.88108 0.92446 0.90298 1.19496 1.29604 0.94641 1.05137 0.90691 1.25874 0.93526 1.00510 0.94387 1.69796 1.24556 1.36711 1.11688 0.86325 0.80403 0.81163 0.78514 1.19068 1.20392 1.18957 1.20976 1.09435 0.94246 0.98278 0.91566 0.92463 0.91258 0.89591 0.88478 0.84411 0.84754 0.85219 0.85323 0.85197 0.77514 0.77323 0.89383 0.89056 0.86132 0.90994 0.87530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.73 9.48 37.16 0.35 -1.38 16 2 C 0.17 1.76 2.57 -67.93 -0.17 1.58 16 3 H 0.09 1.17 7.58 -51.93 -0.39 0.77 16 4 C -0.12 -0.85 4.76 -26.73 -0.13 -0.98 16 5 C -0.61 -3.47 5.69 37.16 0.21 -3.26 16 6 S 2.42 15.07 5.36 -107.50 -0.58 14.49 16 7 C -0.66 -2.42 10.62 101.05 1.07 -1.34 16 8 O -0.94 -9.22 18.10 -57.83 -1.05 -10.26 16 9 O -0.94 -9.42 18.10 -57.83 -1.05 -10.47 16 10 N -0.75 -8.62 4.53 -58.68 -0.27 -8.89 16 11 C 0.70 12.03 8.26 -86.92 -0.72 11.31 16 12 O -0.56 -12.58 13.73 5.29 0.07 -12.51 16 13 N -0.68 -11.73 5.35 -14.27 -0.08 -11.81 16 14 C 0.17 3.73 6.26 -83.76 -0.52 3.21 16 15 C -0.26 -5.69 9.97 -39.10 -0.39 -6.08 16 16 C -0.09 -2.18 10.02 -39.69 -0.40 -2.57 16 17 C -0.17 -4.45 8.66 -38.84 -0.34 -4.78 16 18 C 0.12 3.28 5.55 -106.85 -0.59 2.68 16 19 C -0.46 -12.57 9.06 -37.74 -0.34 -12.91 16 20 H 0.07 1.99 7.87 -52.49 -0.41 1.57 16 21 C 0.07 1.90 5.25 -17.34 -0.09 1.81 16 22 N -0.80 -21.28 10.82 55.55 0.60 -20.68 16 23 Si 0.91 19.20 29.57 -169.99 -5.03 14.17 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 25 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 26 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 27 C -0.21 -5.33 8.39 -38.69 -0.32 -5.65 16 28 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.14 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.13 0.63 7.75 -51.92 -0.40 0.23 16 35 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 36 H 0.13 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 38 H 0.39 3.22 8.62 -40.82 -0.35 2.87 16 39 H 0.39 5.08 8.83 -40.82 -0.36 4.72 16 40 H 0.09 1.66 8.06 -52.49 -0.42 1.23 16 41 H 0.09 1.87 8.06 -52.49 -0.42 1.45 16 42 H 0.12 3.25 6.18 -52.49 -0.32 2.93 16 43 H 0.28 6.76 8.30 -40.82 -0.34 6.42 16 44 H 0.11 2.82 6.44 -52.48 -0.34 2.48 16 LS Contribution 382.40 15.07 5.76 5.76 Total: -1.00 -38.06 382.40 -10.35 -48.42 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -6.37 Total: 10.14 kcal Atomic # 6 Polarization: -15.99 SS G_CDS: -2.38 Total: -18.37 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.26 Total: -41.37 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -2.02 Total: -33.23 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -5.03 Total: 14.17 kcal Atomic # 16 Polarization: 15.07 SS G_CDS: -0.58 Total: 14.49 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -38.06 -10.35 -48.42 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364368270.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.198 kcal (2) G-P(sol) polarization free energy of solvation -38.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds