Wall clock time and date at job start Wed Apr 1 2020 00:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46811 * 2 1 4 4 C 1.52997 * 109.47208 * 240.00060 * 2 1 3 5 5 C 1.53000 * 109.47230 * 174.99905 * 4 2 1 6 6 S 1.81406 * 109.47320 * 179.97438 * 5 4 2 7 7 C 1.81394 * 101.92175 * 179.97438 * 6 5 4 8 8 O 1.42094 * 108.57593 * 294.49043 * 6 5 4 9 9 O 1.42097 * 108.57529 * 65.51356 * 6 5 4 10 10 N 1.46504 * 109.46951 * 119.99826 * 2 1 3 11 11 C 1.34773 * 119.99944 * 274.99800 * 10 2 1 12 12 O 1.21582 * 120.00414 * 0.27886 * 11 10 2 13 13 N 1.34778 * 119.99615 * 180.02562 * 11 10 2 14 14 C 1.39960 * 119.99780 * 174.88176 * 13 11 10 15 15 C 1.39289 * 119.94335 * 146.39348 * 14 13 11 16 16 C 1.38494 * 120.42753 * 179.97438 * 15 14 13 17 17 C 1.37684 * 120.31998 * 0.02562 * 16 15 14 18 18 C 1.40735 * 119.88476 * 0.02562 * 17 16 15 19 19 C 1.41405 * 120.21155 * 180.02562 * 18 17 16 20 20 H 1.07995 * 119.99886 * 151.67820 * 19 18 17 21 21 C 1.39935 * 119.99739 * 331.67077 * 19 18 17 22 22 N 1.30827 * 119.99832 * 348.99389 * 21 19 18 23 23 Si 1.86803 * 119.99882 * 168.99494 * 21 19 18 24 24 H 1.48506 * 109.46788 * 60.00410 * 23 21 19 25 25 H 1.48497 * 109.46875 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47128 * 300.00304 * 23 21 19 27 27 C 1.38227 * 119.94930 * 326.12760 * 14 13 11 28 28 H 1.08997 * 109.46957 * 60.00337 * 1 2 3 29 29 H 1.09002 * 109.46811 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.46952 * 299.99985 * 1 2 3 31 31 H 1.09005 * 109.47308 * 294.99990 * 4 2 1 32 32 H 1.09001 * 109.47372 * 54.99900 * 4 2 1 33 33 H 1.08997 * 109.47182 * 299.99961 * 5 4 2 34 34 H 1.09001 * 109.46938 * 60.00291 * 5 4 2 35 35 H 1.09001 * 109.47179 * 59.99863 * 7 6 5 36 36 H 1.08995 * 109.47336 * 180.02562 * 7 6 5 37 37 H 1.09000 * 109.47372 * 300.00037 * 7 6 5 38 38 H 0.97000 * 119.99569 * 95.00885 * 10 2 1 39 39 H 0.97001 * 120.00729 * 354.88277 * 13 11 10 40 40 H 1.08000 * 119.78918 * 0.02562 * 15 14 13 41 41 H 1.07999 * 119.83432 * 180.02562 * 16 15 14 42 42 H 1.07997 * 120.05605 * 179.97438 * 17 16 15 43 43 H 0.96999 * 119.99639 * 179.97438 * 22 21 19 44 44 H 1.08004 * 120.15723 * 359.97359 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6132 -1.3137 6 16 4.1696 -1.4690 -2.7944 7 6 5.9614 -1.2162 -2.6678 8 8 3.8969 -2.8569 -2.6583 9 8 3.6955 -0.7780 -3.9420 10 7 2.0183 -0.6906 1.1962 11 6 2.1470 -0.0182 2.3571 12 8 1.8531 1.1602 2.4130 13 7 2.5968 -0.6535 3.4575 14 6 2.8324 0.0668 4.6341 15 6 2.6093 -0.5315 5.8720 16 6 2.8397 0.1718 7.0427 17 6 3.2917 1.4714 6.9952 18 6 3.5205 2.0893 5.7517 19 6 3.9852 3.4236 5.6949 20 1 4.5791 3.7533 4.8553 21 6 3.6754 4.3169 6.7266 22 7 2.7863 3.9907 7.6292 23 14 4.5314 5.9749 6.8150 24 1 4.2484 6.7446 5.5769 25 1 4.0304 6.7284 7.9924 26 1 5.9963 5.7693 6.9461 27 6 3.2914 1.3689 4.5660 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.7517 -1.7715 -1.2056 32 1 1.6054 -0.2617 -2.1370 33 1 3.8532 0.4370 -1.3573 34 1 3.9994 -1.0728 -0.4260 35 1 6.3259 -1.6573 -1.7400 36 1 6.4561 -1.6909 -3.5151 37 1 6.1789 -0.1481 -2.6723 38 1 2.2491 -1.6317 1.1526 39 1 2.7571 -1.6098 3.4340 40 1 2.2552 -1.5507 5.9193 41 1 2.6639 -0.3016 7.9973 42 1 3.4695 2.0160 7.9107 43 1 2.5718 4.6098 8.3445 44 1 3.4691 1.8320 3.6066 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364368270.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:42 Heat of formation + Delta-G solvation = -111.748961 kcal Electronic energy + Delta-G solvation = -26864.436574 eV Core-core repulsion = 22907.715199 eV Total energy + Delta-G solvation = -3956.721375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.48935 -39.33215 -37.96787 -37.66567 -37.00481 -36.08517 -34.85143 -33.42593 -31.71515 -31.18874 -30.27423 -29.42652 -27.22251 -25.40230 -23.74010 -22.75510 -21.94652 -21.59969 -19.75689 -19.60584 -19.26720 -17.77123 -17.39460 -17.26471 -16.96231 -16.92321 -16.48622 -16.27458 -16.16656 -15.55960 -15.07181 -14.92526 -14.62661 -14.56150 -14.09556 -13.98828 -13.91421 -13.86833 -13.56774 -13.17901 -13.10571 -13.06389 -13.00703 -12.83550 -12.80401 -12.54727 -12.41805 -12.21349 -12.11224 -11.95871 -11.89615 -11.57101 -11.28206 -11.26219 -11.02433 -10.68681 -10.12182 -9.33139 -8.65197 -8.54015 -6.36040 -0.89877 0.96323 1.05624 1.36858 1.49123 1.52049 1.71070 1.89384 2.21106 2.24840 2.72684 2.79427 3.15276 3.32305 3.58908 3.75610 3.77176 3.87508 4.12125 4.23532 4.37277 4.40140 4.49383 4.59978 4.65902 4.70896 4.78312 4.94388 5.00121 5.02955 5.09330 5.14359 5.15956 5.23885 5.30193 5.36523 5.56438 5.75750 5.86033 6.09042 6.15067 6.22534 6.40529 6.72541 6.97611 7.03906 7.15691 7.65725 8.39494 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014114 B = 0.002429 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.325325 B =11526.075260 C =12218.915794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.166 3.834 3 H 0.072 0.928 4 C -0.119 4.119 5 C -0.611 4.611 6 S 2.437 3.563 7 C -0.647 4.647 8 O -0.980 6.980 9 O -0.984 6.984 10 N -0.722 5.722 11 C 0.695 3.305 12 O -0.617 6.617 13 N -0.671 5.671 14 C 0.176 3.824 15 C -0.249 4.249 16 C -0.093 4.093 17 C -0.196 4.196 18 C 0.088 3.912 19 C -0.502 4.502 20 H 0.066 0.934 21 C 0.031 3.969 22 N -0.833 5.833 23 Si 0.985 3.015 24 H -0.266 1.266 25 H -0.265 1.265 26 H -0.256 1.256 27 C -0.231 4.231 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.102 0.898 32 H 0.108 0.892 33 H 0.149 0.851 34 H 0.148 0.852 35 H 0.149 0.851 36 H 0.137 0.863 37 H 0.147 0.853 38 H 0.413 0.587 39 H 0.418 0.582 40 H 0.131 0.869 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.286 0.714 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.568 -12.339 -16.997 21.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.060 3.940 3 H 0.090 0.910 4 C -0.158 4.158 5 C -0.741 4.741 6 S 2.624 3.376 7 C -0.799 4.799 8 O -0.977 6.977 9 O -0.981 6.981 10 N -0.380 5.380 11 C 0.395 3.605 12 O -0.495 6.495 13 N -0.319 5.319 14 C 0.082 3.918 15 C -0.270 4.270 16 C -0.112 4.112 17 C -0.216 4.216 18 C 0.085 3.915 19 C -0.532 4.532 20 H 0.084 0.916 21 C -0.182 4.182 22 N -0.460 5.460 23 Si 0.805 3.195 24 H -0.190 1.190 25 H -0.189 1.189 26 H -0.180 1.180 27 C -0.253 4.253 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.120 0.880 32 H 0.126 0.874 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.167 0.833 36 H 0.155 0.845 37 H 0.165 0.835 38 H 0.250 0.750 39 H 0.256 0.744 40 H 0.149 0.851 41 H 0.140 0.860 42 H 0.122 0.878 43 H 0.097 0.903 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.690 -11.677 -17.505 21.214 hybrid contribution 0.721 0.611 0.869 1.284 sum 3.411 -11.066 -16.636 20.270 Atomic orbital electron populations 1.22217 0.94879 1.03122 1.02223 1.20787 0.94142 0.96688 0.82387 0.91021 1.21700 0.91643 1.03791 0.98653 1.30352 1.06018 1.16392 1.21293 1.07088 0.79402 0.74603 0.76496 1.30157 1.22582 1.13751 1.13391 1.93547 1.84754 1.32250 1.87138 1.93548 1.80362 1.76106 1.48112 1.45044 1.71283 1.14195 1.07429 1.16198 0.78162 0.84850 0.81270 1.90982 1.57028 1.16817 1.84707 1.42354 1.68869 1.11801 1.08905 1.17251 0.97729 0.91739 0.85059 1.20460 1.14894 1.01392 0.90304 1.20837 0.98697 0.94082 0.97589 1.21355 1.07825 0.94753 0.97711 1.17838 0.89068 0.93105 0.91456 1.19734 1.31412 0.95804 1.06262 0.91550 1.26735 0.93753 1.04227 0.93474 1.69858 1.25509 1.38337 1.12319 0.85226 0.79428 0.76064 0.78756 1.19016 1.18899 1.18043 1.20936 1.11316 0.96083 0.96935 0.89750 0.90624 0.94902 0.87974 0.87381 0.83300 0.83364 0.83303 0.84476 0.83489 0.75019 0.74402 0.85102 0.86035 0.87776 0.90309 0.89487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.27 9.48 71.98 0.68 -2.59 16 2 C 0.17 3.26 2.57 44.99 0.12 3.37 16 3 H 0.07 1.78 7.58 -2.39 -0.02 1.77 16 4 C -0.12 -1.47 4.76 30.59 0.15 -1.32 16 5 C -0.61 -5.64 5.69 71.98 0.41 -5.23 16 6 S 2.44 26.43 5.36 -56.49 -0.30 26.13 16 7 C -0.65 -2.91 10.62 113.37 1.20 -1.71 16 8 O -0.98 -17.83 18.10 -127.37 -2.31 -20.14 16 9 O -0.98 -18.95 18.10 -127.37 -2.30 -21.26 16 10 N -0.72 -15.32 4.53 -457.82 -2.08 -17.39 16 11 C 0.69 23.52 8.26 179.06 1.48 25.00 16 12 O -0.62 -28.45 13.73 -3.97 -0.05 -28.50 16 13 N -0.67 -21.83 5.35 -317.33 -1.70 -23.52 16 14 C 0.18 7.73 6.26 38.09 0.24 7.97 16 15 C -0.25 -10.26 9.97 22.58 0.23 -10.04 16 16 C -0.09 -4.23 10.02 22.20 0.22 -4.01 16 17 C -0.20 -10.58 8.66 22.75 0.20 -10.38 16 18 C 0.09 5.04 5.55 -21.31 -0.12 4.92 16 19 C -0.50 -28.99 9.06 23.46 0.21 -28.78 16 20 H 0.07 3.76 7.87 -2.91 -0.02 3.73 16 21 C 0.03 1.67 5.25 85.25 0.45 2.12 16 22 N -0.83 -45.72 10.82 21.82 0.24 -45.49 16 23 Si 0.98 40.31 29.57 68.60 2.03 42.34 16 24 H -0.27 -10.74 7.11 99.48 0.71 -10.03 16 25 H -0.26 -10.12 7.11 99.48 0.71 -9.41 16 26 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 27 C -0.23 -12.25 8.39 22.85 0.19 -12.06 16 28 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.10 0.96 8.14 -2.38 -0.02 0.94 16 32 H 0.11 1.14 8.14 -2.39 -0.02 1.13 16 33 H 0.15 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.15 0.95 7.75 -2.39 -0.02 0.94 16 35 H 0.15 0.18 8.14 -2.39 -0.02 0.16 16 36 H 0.14 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 38 H 0.41 5.44 8.62 -92.71 -0.80 4.64 16 39 H 0.42 9.33 8.83 -92.71 -0.82 8.51 16 40 H 0.13 4.28 8.06 -2.91 -0.02 4.25 16 41 H 0.12 4.70 8.06 -2.91 -0.02 4.67 16 42 H 0.10 5.85 6.18 -2.91 -0.02 5.83 16 43 H 0.29 14.20 8.30 -92.71 -0.77 13.43 16 44 H 0.09 4.87 6.44 -2.91 -0.02 4.85 16 Total: -1.00 -87.95 382.40 -1.41 -89.35 By element: Atomic # 1 Polarization: 31.81 SS G_CDS: -0.58 Total: 31.23 kcal Atomic # 6 Polarization: -38.39 SS G_CDS: 5.65 Total: -32.74 kcal Atomic # 7 Polarization: -82.87 SS G_CDS: -3.54 Total: -86.41 kcal Atomic # 8 Polarization: -65.23 SS G_CDS: -4.66 Total: -69.90 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 16 Polarization: 26.43 SS G_CDS: -0.30 Total: 26.13 kcal Total: -87.95 -1.41 -89.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364368270.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.397 kcal (2) G-P(sol) polarization free energy of solvation -87.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds