Wall clock time and date at job start Wed Apr 1 2020 00:01:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.49060 * 2 1 4 4 C 1.53094 * 109.48132 * 239.96977 * 2 1 3 5 5 C 1.53182 * 109.16012 * 297.62787 * 4 2 1 6 6 H 1.08998 * 109.54656 * 62.97731 * 5 4 2 7 7 C 1.52996 * 109.54230 * 183.15370 * 5 4 2 8 8 S 1.81404 * 109.47299 * 185.16068 * 7 5 4 9 9 O 1.42096 * 110.54393 * 59.52265 * 8 7 5 10 10 O 1.42107 * 110.53732 * 282.77696 * 8 7 5 11 11 N 1.65594 * 104.45071 * 171.15483 * 8 7 5 12 12 C 1.38824 * 120.00370 * 61.83648 * 11 8 7 13 13 C 1.39795 * 119.58290 * 2.70444 * 12 11 8 14 14 C 1.38597 * 119.49061 * 179.97438 * 13 12 11 15 15 C 1.38389 * 118.68108 * 359.97438 * 14 13 12 16 16 C 1.40566 * 119.14874 * 0.27802 * 15 14 13 17 17 C 1.41312 * 119.78165 * 179.69877 * 16 15 14 18 18 H 1.07995 * 120.00399 * 343.04317 * 17 16 15 19 19 C 1.40029 * 119.99439 * 163.04553 * 17 16 15 20 20 N 1.30745 * 119.99833 * 163.68981 * 19 17 16 21 21 Si 1.86800 * 120.00411 * 343.69087 * 19 17 16 22 22 H 1.48505 * 109.46875 * 91.77130 * 21 19 17 23 23 H 1.48497 * 109.47340 * 211.77354 * 21 19 17 24 24 H 1.48497 * 109.46810 * 331.77468 * 21 19 17 25 25 N 1.31960 * 119.58334 * 182.67948 * 12 11 8 26 26 C 1.53175 * 109.10967 * 303.06430 * 5 4 2 27 27 C 1.53099 * 109.15880 * 56.84783 * 26 5 4 28 28 O 1.42899 * 109.48675 * 302.52512 * 27 26 5 29 29 H 1.08996 * 109.47304 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46967 * 300.03515 * 1 2 3 31 31 H 1.09000 * 109.46725 * 60.02638 * 1 2 3 32 32 H 1.08994 * 109.52444 * 177.72619 * 4 2 1 33 33 H 1.08997 * 109.57359 * 57.56130 * 4 2 1 34 34 H 1.09004 * 109.47429 * 65.15530 * 7 5 4 35 35 H 1.09007 * 109.47218 * 305.15582 * 7 5 4 36 36 H 0.97007 * 119.99386 * 241.84402 * 11 8 7 37 37 H 1.07993 * 120.25259 * 0.02562 * 13 12 11 38 38 H 1.07994 * 120.65909 * 180.02562 * 14 13 12 39 39 H 1.07999 * 120.43072 * 180.02562 * 15 14 13 40 40 H 0.97000 * 120.00398 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.52520 * 176.84451 * 26 5 4 42 42 H 1.08998 * 109.52490 * 297.02769 * 26 5 4 43 43 H 1.09004 * 109.48510 * 182.49697 * 27 26 5 44 44 H 1.09004 * 109.41516 * 62.51398 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 1.5757 -2.1814 -1.2121 6 1 0.4867 -2.2180 -1.2423 7 6 2.1467 -2.9316 -2.4170 8 16 1.4738 -4.6157 -2.4552 9 8 0.0563 -4.5843 -2.5497 10 8 2.1260 -5.4351 -1.4947 11 7 1.9670 -5.2249 -3.9139 12 6 3.3214 -5.3545 -4.1899 13 6 4.2604 -5.0216 -3.2093 14 6 5.6121 -5.1523 -3.4867 15 6 5.9924 -5.6123 -4.7352 16 6 5.0007 -5.9255 -5.6808 17 6 5.3742 -6.3902 -6.9620 18 1 6.3855 -6.2496 -7.3138 19 6 4.4329 -7.0331 -7.7754 20 7 4.6641 -7.1777 -9.0541 21 14 2.8469 -7.6841 -7.0336 22 1 1.7926 -6.6425 -7.1274 23 1 2.4138 -8.8951 -7.7758 24 1 3.0736 -8.0320 -5.6079 25 7 3.7060 -5.7909 -5.3744 26 6 2.0745 -2.8336 0.0810 27 6 1.5645 -2.0284 1.2791 28 8 2.0066 -0.6742 1.1664 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 3.1298 -0.6876 -1.2709 33 1 1.6430 -0.2361 -2.1404 34 1 3.2328 -2.9760 -2.3361 35 1 1.8717 -2.4097 -3.3337 36 1 1.3095 -5.4910 -4.5757 37 1 3.9352 -4.6662 -2.2428 38 1 6.3537 -4.9009 -2.7429 39 1 7.0379 -5.7252 -4.9814 40 1 4.0123 -7.6233 -9.6175 41 1 1.7005 -3.8556 0.1414 42 1 3.1645 -2.8428 0.0874 43 1 1.9530 -2.4621 2.2006 44 1 0.4749 -2.0549 1.2960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364957634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:23 Heat of formation + Delta-G solvation = -101.677459 kcal Electronic energy + Delta-G solvation = -28386.211854 eV Core-core repulsion = 24429.927212 eV Total energy + Delta-G solvation = -3956.284642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.17207 -39.05707 -37.12831 -36.02804 -35.31447 -35.03277 -33.46959 -32.57653 -31.32926 -29.59513 -29.33600 -27.47816 -25.82882 -23.87416 -22.83839 -22.25372 -21.63995 -19.63086 -19.28078 -18.07836 -17.51949 -17.14408 -16.69859 -16.51918 -16.26206 -15.67742 -15.23738 -15.03607 -14.84070 -14.64060 -14.25406 -14.01283 -13.61348 -13.48258 -13.13683 -12.80327 -12.65744 -12.62098 -12.44589 -12.33638 -12.24896 -12.09620 -11.90259 -11.70572 -11.55227 -11.50587 -11.35886 -11.14079 -10.99163 -10.70369 -10.62249 -10.44286 -10.22781 -10.17694 -9.74330 -9.36990 -8.68057 -8.07312 -7.60170 -7.09798 -4.85874 0.18247 2.32167 2.52492 2.64061 3.29685 3.34319 3.46642 3.54717 3.66261 4.07669 4.18977 4.19826 4.30835 4.36580 4.42453 4.60951 4.76233 4.87382 4.97346 5.04383 5.06435 5.16105 5.23460 5.27386 5.35501 5.39312 5.51457 5.55247 5.62257 5.72864 5.75603 5.79250 5.85677 6.01137 6.06627 6.15319 6.40253 6.63626 6.93600 6.94305 7.05526 7.27124 7.37607 7.72213 7.98023 8.36406 8.43839 9.34778 9.83863 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.003285 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.664656 B = 8521.160332 C = 8952.486721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.085 3.915 3 H 0.105 0.895 4 C -0.136 4.136 5 C -0.078 4.078 6 H 0.089 0.911 7 C -0.626 4.626 8 S 2.612 3.388 9 O -0.960 6.960 10 O -0.938 6.938 11 N -1.042 6.042 12 C 0.412 3.588 13 C -0.369 4.369 14 C -0.015 4.015 15 C -0.277 4.277 16 C 0.271 3.729 17 C -0.405 4.405 18 H 0.101 0.899 19 C 0.089 3.911 20 N -0.788 5.788 21 Si 0.978 3.022 22 H -0.272 1.272 23 H -0.319 1.319 24 H -0.262 1.262 25 N -0.590 5.590 26 C -0.179 4.179 27 C 0.060 3.940 28 O -0.375 6.375 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.069 0.931 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.151 0.849 35 H 0.138 0.862 36 H 0.423 0.577 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.291 0.709 41 H 0.082 0.918 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.871 11.842 13.933 19.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.027 3.973 3 H 0.123 0.877 4 C -0.175 4.175 5 C -0.098 4.098 6 H 0.107 0.893 7 C -0.756 4.756 8 S 2.705 3.295 9 O -0.950 6.950 10 O -0.928 6.928 11 N -0.790 5.790 12 C 0.175 3.825 13 C -0.396 4.396 14 C -0.039 4.039 15 C -0.299 4.299 16 C 0.148 3.852 17 C -0.436 4.436 18 H 0.119 0.881 19 C -0.136 4.136 20 N -0.410 5.410 21 Si 0.810 3.190 22 H -0.198 1.198 23 H -0.250 1.250 24 H -0.187 1.187 25 N -0.315 5.315 26 C -0.217 4.217 27 C -0.017 4.017 28 O -0.294 6.294 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.099 0.901 33 H 0.098 0.902 34 H 0.169 0.831 35 H 0.156 0.844 36 H 0.258 0.742 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.130 0.870 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.108 0.892 43 H 0.118 0.882 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.747 11.228 13.925 19.493 hybrid contribution -0.114 0.084 -0.326 0.355 sum -7.861 11.312 13.599 19.357 Atomic orbital electron populations 1.22514 0.96361 1.03066 1.02964 1.22214 0.93544 0.96523 0.85042 0.87699 1.22210 1.02604 0.93891 0.98795 1.20973 1.00708 0.96269 0.91820 0.89320 1.30782 1.14926 1.22829 1.07030 1.05086 0.73906 0.77510 0.72962 1.93589 1.28229 1.87596 1.85578 1.93637 1.76247 1.63823 1.59068 1.53440 1.12541 1.75925 1.37131 1.17711 0.81552 0.92111 0.91082 1.20814 0.94069 1.25202 0.99467 1.20673 0.94044 0.93498 0.95667 1.21594 0.99288 1.14047 0.95011 1.18252 0.85195 0.88955 0.92839 1.19549 0.99192 1.29165 0.95657 0.88077 1.26368 1.00949 0.92402 0.93862 1.69650 1.36400 1.29369 1.05607 0.84929 0.79201 0.75790 0.79070 1.19795 1.25011 1.18669 1.66600 1.19701 1.27061 1.18164 1.22653 1.03946 1.00228 0.94832 1.22557 0.98971 0.82071 0.98086 1.87997 1.73708 1.24643 1.43056 0.91674 0.91656 0.91203 0.90130 0.90221 0.83138 0.84370 0.74150 0.87038 0.87123 0.87027 0.89888 0.89988 0.89216 0.88221 0.92548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.41 8.65 37.16 0.32 -1.09 16 2 C 0.08 0.71 3.91 -26.68 -0.10 0.60 16 3 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 4 C -0.14 -1.19 4.93 -26.59 -0.13 -1.32 16 5 C -0.08 -0.80 1.95 -90.44 -0.18 -0.98 16 6 H 0.09 0.86 6.62 -51.93 -0.34 0.52 16 7 C -0.63 -7.35 4.98 37.16 0.19 -7.16 16 8 S 2.61 40.78 4.35 -107.50 -0.47 40.31 16 9 O -0.96 -16.17 18.08 -57.54 -1.04 -17.21 16 10 O -0.94 -16.80 14.39 -57.54 -0.83 -17.63 16 11 N -1.04 -19.19 5.76 31.15 0.18 -19.01 16 12 C 0.41 8.91 7.48 -155.32 -1.16 7.75 16 13 C -0.37 -7.35 7.84 -38.87 -0.30 -7.65 16 14 C -0.02 -0.30 10.15 -39.39 -0.40 -0.70 16 15 C -0.28 -6.09 9.83 -38.65 -0.38 -6.47 16 16 C 0.27 6.73 6.10 -85.00 -0.52 6.21 16 17 C -0.41 -10.54 9.65 -37.74 -0.36 -10.91 16 18 H 0.10 2.64 8.06 -52.49 -0.42 2.22 16 19 C 0.09 2.29 5.50 -17.34 -0.10 2.19 16 20 N -0.79 -20.26 13.92 55.55 0.77 -19.49 16 21 Si 0.98 23.17 25.60 -169.99 -4.35 18.82 16 22 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 23 H -0.32 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.26 -6.53 6.74 56.52 0.38 -6.15 16 25 N -0.59 -14.44 5.62 -10.32 -0.06 -14.49 16 26 C -0.18 -1.89 5.07 -26.59 -0.13 -2.03 16 27 C 0.06 0.55 6.51 37.21 0.24 0.80 16 28 O -0.38 -3.86 10.60 -35.23 -0.37 -4.24 16 29 H 0.06 0.51 4.98 -51.93 -0.26 0.25 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.15 1.75 5.97 -51.92 -0.31 1.44 16 35 H 0.14 1.38 8.14 -51.92 -0.42 0.96 16 36 H 0.42 7.42 8.91 -34.46 -0.31 7.11 16 37 H 0.11 1.93 4.22 -52.49 -0.22 1.71 16 38 H 0.11 1.79 8.06 -52.49 -0.42 1.37 16 39 H 0.11 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.29 6.79 8.29 -40.82 -0.34 6.45 16 41 H 0.08 0.92 6.27 -51.93 -0.33 0.59 16 42 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 44 H 0.06 0.46 6.34 -51.93 -0.33 0.13 16 LS Contribution 352.76 15.07 5.32 5.32 Total: -1.00 -31.26 352.76 -9.77 -41.04 By element: Atomic # 1 Polarization: 13.25 SS G_CDS: -5.90 Total: 7.34 kcal Atomic # 6 Polarization: -17.73 SS G_CDS: -3.02 Total: -20.76 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: 0.89 Total: -52.99 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -2.24 Total: -39.08 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -4.35 Total: 18.82 kcal Atomic # 16 Polarization: 40.78 SS G_CDS: -0.47 Total: 40.31 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -31.26 -9.77 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364957634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.639 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds