Wall clock time and date at job start Wed Apr 1 2020 00:01:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.49060 * 2 1 4 4 C 1.53094 * 109.48132 * 239.96977 * 2 1 3 5 5 C 1.53182 * 109.16012 * 297.62787 * 4 2 1 6 6 H 1.08998 * 109.54656 * 62.97731 * 5 4 2 7 7 C 1.52996 * 109.54230 * 183.15370 * 5 4 2 8 8 S 1.81404 * 109.47299 * 185.16068 * 7 5 4 9 9 O 1.42096 * 110.54393 * 59.52265 * 8 7 5 10 10 O 1.42107 * 110.53732 * 282.77696 * 8 7 5 11 11 N 1.65594 * 104.45071 * 171.15483 * 8 7 5 12 12 C 1.38824 * 120.00370 * 61.83648 * 11 8 7 13 13 C 1.39795 * 119.58290 * 2.70444 * 12 11 8 14 14 C 1.38597 * 119.49061 * 179.97438 * 13 12 11 15 15 C 1.38389 * 118.68108 * 359.97438 * 14 13 12 16 16 C 1.40566 * 119.14874 * 0.27802 * 15 14 13 17 17 C 1.41312 * 119.78165 * 179.69877 * 16 15 14 18 18 H 1.07995 * 120.00399 * 343.04317 * 17 16 15 19 19 C 1.40029 * 119.99439 * 163.04553 * 17 16 15 20 20 N 1.30745 * 119.99833 * 163.68981 * 19 17 16 21 21 Si 1.86800 * 120.00411 * 343.69087 * 19 17 16 22 22 H 1.48505 * 109.46875 * 91.77130 * 21 19 17 23 23 H 1.48497 * 109.47340 * 211.77354 * 21 19 17 24 24 H 1.48497 * 109.46810 * 331.77468 * 21 19 17 25 25 N 1.31960 * 119.58334 * 182.67948 * 12 11 8 26 26 C 1.53175 * 109.10967 * 303.06430 * 5 4 2 27 27 C 1.53099 * 109.15880 * 56.84783 * 26 5 4 28 28 O 1.42899 * 109.48675 * 302.52512 * 27 26 5 29 29 H 1.08996 * 109.47304 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46967 * 300.03515 * 1 2 3 31 31 H 1.09000 * 109.46725 * 60.02638 * 1 2 3 32 32 H 1.08994 * 109.52444 * 177.72619 * 4 2 1 33 33 H 1.08997 * 109.57359 * 57.56130 * 4 2 1 34 34 H 1.09004 * 109.47429 * 65.15530 * 7 5 4 35 35 H 1.09007 * 109.47218 * 305.15582 * 7 5 4 36 36 H 0.97007 * 119.99386 * 241.84402 * 11 8 7 37 37 H 1.07993 * 120.25259 * 0.02562 * 13 12 11 38 38 H 1.07994 * 120.65909 * 180.02562 * 14 13 12 39 39 H 1.07999 * 120.43072 * 180.02562 * 15 14 13 40 40 H 0.97000 * 120.00398 * 179.97438 * 20 19 17 41 41 H 1.09000 * 109.52520 * 176.84451 * 26 5 4 42 42 H 1.08998 * 109.52490 * 297.02769 * 26 5 4 43 43 H 1.09004 * 109.48510 * 182.49697 * 27 26 5 44 44 H 1.09004 * 109.41516 * 62.51398 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0406 -0.7223 -1.2495 5 6 1.5757 -2.1814 -1.2121 6 1 0.4867 -2.2180 -1.2423 7 6 2.1467 -2.9316 -2.4170 8 16 1.4738 -4.6157 -2.4552 9 8 0.0563 -4.5843 -2.5497 10 8 2.1260 -5.4351 -1.4947 11 7 1.9670 -5.2249 -3.9139 12 6 3.3214 -5.3545 -4.1899 13 6 4.2604 -5.0216 -3.2093 14 6 5.6121 -5.1523 -3.4867 15 6 5.9924 -5.6123 -4.7352 16 6 5.0007 -5.9255 -5.6808 17 6 5.3742 -6.3902 -6.9620 18 1 6.3855 -6.2496 -7.3138 19 6 4.4329 -7.0331 -7.7754 20 7 4.6641 -7.1777 -9.0541 21 14 2.8469 -7.6841 -7.0336 22 1 1.7926 -6.6425 -7.1274 23 1 2.4138 -8.8951 -7.7758 24 1 3.0736 -8.0320 -5.6079 25 7 3.7060 -5.7909 -5.3744 26 6 2.0745 -2.8336 0.0810 27 6 1.5645 -2.0284 1.2791 28 8 2.0066 -0.6742 1.1664 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5144 0.8897 31 1 -0.3633 0.5134 -0.8902 32 1 3.1298 -0.6876 -1.2709 33 1 1.6430 -0.2361 -2.1404 34 1 3.2328 -2.9760 -2.3361 35 1 1.8717 -2.4097 -3.3337 36 1 1.3095 -5.4910 -4.5757 37 1 3.9352 -4.6662 -2.2428 38 1 6.3537 -4.9009 -2.7429 39 1 7.0379 -5.7252 -4.9814 40 1 4.0123 -7.6233 -9.6175 41 1 1.7005 -3.8556 0.1414 42 1 3.1645 -2.8428 0.0874 43 1 1.9530 -2.4621 2.2006 44 1 0.4749 -2.0549 1.2960 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364957634.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:22 Heat of formation + Delta-G solvation = -123.014860 kcal Electronic energy + Delta-G solvation = -28387.137113 eV Core-core repulsion = 24429.927212 eV Total energy + Delta-G solvation = -3957.209901 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88245 -40.76075 -38.45584 -37.32965 -36.65521 -36.13906 -35.25384 -33.23121 -33.05392 -31.06367 -30.42119 -28.23763 -27.54222 -24.62283 -23.95854 -23.76621 -23.12765 -20.69277 -20.34860 -19.70078 -19.03426 -18.57727 -17.78227 -17.47002 -17.11395 -16.97413 -16.84311 -16.22079 -16.01276 -15.89178 -15.52958 -15.21556 -14.83191 -14.69900 -14.36418 -14.22513 -14.01044 -13.76363 -13.61877 -13.47747 -13.33370 -13.30934 -13.07817 -13.02247 -12.83840 -12.70093 -12.42386 -12.37859 -12.21136 -12.11288 -12.00211 -11.96865 -11.46530 -11.26726 -10.98418 -10.47066 -10.40544 -9.86957 -9.30478 -8.99571 -6.75481 -1.03985 0.56000 0.83120 1.29609 1.38602 1.46321 1.56079 2.30324 2.41035 2.55298 2.91977 2.97916 3.28336 3.45116 3.55432 3.62612 3.69583 3.94514 4.03490 4.07133 4.14217 4.24737 4.32752 4.40195 4.44847 4.48240 4.52237 4.60039 4.65974 4.72942 4.77400 4.90588 4.95537 4.99998 5.08294 5.13171 5.21315 5.21859 5.37874 5.39291 5.60809 5.71735 5.95752 6.09617 6.28123 6.51230 6.60128 7.55990 7.99990 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021148 B = 0.003285 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.664656 B = 8521.160332 C = 8952.486721 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.080 3.920 3 H 0.120 0.880 4 C -0.134 4.134 5 C -0.082 4.082 6 H 0.096 0.904 7 C -0.601 4.601 8 S 2.605 3.395 9 O -0.975 6.975 10 O -0.965 6.965 11 N -1.047 6.047 12 C 0.398 3.602 13 C -0.354 4.354 14 C -0.006 4.006 15 C -0.290 4.290 16 C 0.259 3.741 17 C -0.444 4.444 18 H 0.084 0.916 19 C 0.065 3.935 20 N -0.821 5.821 21 Si 1.018 2.982 22 H -0.269 1.269 23 H -0.309 1.309 24 H -0.284 1.284 25 N -0.614 5.614 26 C -0.185 4.185 27 C 0.058 3.942 28 O -0.391 6.391 29 H 0.058 0.942 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.424 0.576 37 H 0.141 0.859 38 H 0.156 0.844 39 H 0.124 0.876 40 H 0.298 0.702 41 H 0.071 0.929 42 H 0.089 0.911 43 H 0.109 0.891 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.320 13.982 16.095 22.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C 0.022 3.978 3 H 0.137 0.863 4 C -0.173 4.173 5 C -0.103 4.103 6 H 0.114 0.886 7 C -0.735 4.735 8 S 2.703 3.297 9 O -0.965 6.965 10 O -0.955 6.955 11 N -0.792 5.792 12 C 0.162 3.838 13 C -0.380 4.380 14 C -0.030 4.030 15 C -0.313 4.313 16 C 0.135 3.865 17 C -0.475 4.475 18 H 0.102 0.898 19 C -0.156 4.156 20 N -0.445 5.445 21 Si 0.849 3.151 22 H -0.195 1.195 23 H -0.240 1.240 24 H -0.211 1.211 25 N -0.340 5.340 26 C -0.223 4.223 27 C -0.019 4.019 28 O -0.310 6.310 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.101 0.899 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.176 0.824 35 H 0.181 0.819 36 H 0.259 0.741 37 H 0.159 0.841 38 H 0.174 0.826 39 H 0.142 0.858 40 H 0.109 0.891 41 H 0.090 0.910 42 H 0.108 0.892 43 H 0.127 0.873 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -8.234 13.329 16.086 22.455 hybrid contribution 0.002 -0.410 -0.702 0.812 sum -8.232 12.919 15.385 21.710 Atomic orbital electron populations 1.22523 0.95706 1.02912 1.03792 1.22390 0.94157 0.96982 0.84248 0.86279 1.22238 1.02694 0.92526 0.99818 1.21117 1.01206 0.97162 0.90769 0.88629 1.30611 1.14931 1.18702 1.09222 1.05319 0.73629 0.78960 0.71769 1.93567 1.29281 1.88342 1.85358 1.93597 1.76425 1.66141 1.59350 1.53623 1.11363 1.76551 1.37709 1.18067 0.83135 0.91879 0.90760 1.21319 0.94084 1.22603 1.00009 1.21190 0.94933 0.91390 0.95488 1.21812 0.99500 1.14377 0.95565 1.18439 0.86186 0.88839 0.93067 1.19535 0.98813 1.32022 0.97156 0.89756 1.26747 1.02260 0.92536 0.94072 1.69650 1.37544 1.31273 1.06026 0.84360 0.77767 0.75756 0.77193 1.19535 1.23967 1.21055 1.66509 1.19837 1.27768 1.19868 1.22712 1.03981 0.99944 0.95669 1.22625 0.99562 0.81730 0.97958 1.87982 1.74121 1.24919 1.43954 0.92275 0.91382 0.89933 0.90136 0.88489 0.82364 0.81948 0.74118 0.84142 0.82609 0.85802 0.89111 0.91031 0.89245 0.87312 0.91703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.26 8.65 71.98 0.62 -1.64 16 2 C 0.08 1.08 3.91 30.63 0.12 1.20 16 3 H 0.12 1.27 8.14 -2.39 -0.02 1.25 16 4 C -0.13 -1.84 4.93 30.69 0.15 -1.69 16 5 C -0.08 -1.43 1.95 -10.68 -0.02 -1.45 16 6 H 0.10 1.57 6.62 -2.39 -0.02 1.55 16 7 C -0.60 -12.03 4.98 71.98 0.36 -11.67 16 8 S 2.61 76.32 4.35 -56.49 -0.25 76.08 16 9 O -0.97 -31.49 18.08 -127.65 -2.31 -33.80 16 10 O -0.97 -32.93 14.39 -127.65 -1.84 -34.76 16 11 N -1.05 -37.14 5.76 -55.37 -0.32 -37.46 16 12 C 0.40 16.56 7.48 133.42 1.00 17.56 16 13 C -0.35 -13.01 7.84 22.73 0.18 -12.83 16 14 C -0.01 -0.23 10.15 22.39 0.23 0.00 16 15 C -0.29 -12.37 9.83 22.87 0.22 -12.14 16 16 C 0.26 12.93 6.10 40.18 0.25 13.17 16 17 C -0.44 -23.84 9.65 23.46 0.23 -23.62 16 18 H 0.08 4.64 8.06 -2.91 -0.02 4.61 16 19 C 0.06 3.43 5.50 85.29 0.47 3.90 16 20 N -0.82 -43.46 13.92 21.84 0.30 -43.16 16 21 Si 1.02 48.47 25.60 68.60 1.76 50.23 16 22 H -0.27 -12.47 7.11 99.48 0.71 -11.77 16 23 H -0.31 -13.92 7.11 99.48 0.71 -13.21 16 24 H -0.28 -14.38 6.74 99.48 0.67 -13.71 16 25 N -0.61 -29.83 5.62 -186.58 -1.05 -30.88 16 26 C -0.19 -3.45 5.07 30.69 0.16 -3.30 16 27 C 0.06 0.94 6.51 72.02 0.47 1.41 16 28 O -0.39 -7.01 10.60 -148.98 -1.58 -8.58 16 29 H 0.06 0.76 4.98 -2.39 -0.01 0.75 16 30 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 33 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.16 3.02 5.97 -2.39 -0.01 3.00 16 35 H 0.16 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.42 14.62 8.91 -96.74 -0.86 13.76 16 37 H 0.14 4.32 4.22 -2.91 -0.01 4.30 16 38 H 0.16 4.20 8.06 -2.91 -0.02 4.18 16 39 H 0.12 4.87 8.06 -2.91 -0.02 4.85 16 40 H 0.30 14.29 8.29 -92.71 -0.77 13.52 16 41 H 0.07 1.48 6.27 -2.39 -0.01 1.46 16 42 H 0.09 1.64 8.14 -2.39 -0.02 1.62 16 43 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.06 0.93 6.34 -2.39 -0.02 0.91 16 Total: -1.00 -68.01 352.76 -0.71 -68.72 By element: Atomic # 1 Polarization: 24.57 SS G_CDS: 0.14 Total: 24.72 kcal Atomic # 6 Polarization: -35.52 SS G_CDS: 4.42 Total: -31.09 kcal Atomic # 7 Polarization: -110.43 SS G_CDS: -1.06 Total: -111.50 kcal Atomic # 8 Polarization: -71.42 SS G_CDS: -5.72 Total: -77.15 kcal Atomic # 14 Polarization: 48.47 SS G_CDS: 1.76 Total: 50.23 kcal Atomic # 16 Polarization: 76.32 SS G_CDS: -0.25 Total: 76.08 kcal Total: -68.01 -0.71 -68.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364957634.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.298 kcal (2) G-P(sol) polarization free energy of solvation -68.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds