Wall clock time and date at job start Wed Apr 1 2020 00:01:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09001 * 109.47751 * 2 1 4 4 C 1.53088 * 109.48086 * 120.02547 * 2 1 3 5 5 C 1.53182 * 109.16069 * 177.58780 * 4 2 1 6 6 H 1.08996 * 109.54016 * 62.89003 * 5 4 2 7 7 C 1.53004 * 109.53957 * 183.06368 * 5 4 2 8 8 S 1.81399 * 109.46760 * 184.56883 * 7 5 4 9 9 O 1.42098 * 110.54359 * 283.68736 * 8 7 5 10 10 O 1.42098 * 110.54395 * 60.43840 * 8 7 5 11 11 N 1.65602 * 104.44897 * 172.06614 * 8 7 5 12 12 C 1.38822 * 120.00213 * 62.20627 * 11 8 7 13 13 C 1.39798 * 119.58264 * 2.82647 * 12 11 8 14 14 C 1.38599 * 119.49010 * 179.97438 * 13 12 11 15 15 C 1.38386 * 118.68062 * 359.97438 * 14 13 12 16 16 C 1.40556 * 119.14838 * 0.02562 * 15 14 13 17 17 C 1.41318 * 119.78471 * 179.97438 * 16 15 14 18 18 H 1.07998 * 119.99670 * 7.84148 * 17 16 15 19 19 C 1.40020 * 120.00115 * 187.85016 * 17 16 15 20 20 N 1.30740 * 120.00235 * 7.77957 * 19 17 16 21 21 Si 1.86807 * 119.99874 * 187.78082 * 19 17 16 22 22 H 1.48502 * 109.46889 * 60.00131 * 21 19 17 23 23 H 1.48500 * 109.46758 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47251 * 299.99575 * 21 19 17 25 25 N 1.31950 * 119.58453 * 182.55107 * 12 11 8 26 26 C 1.53178 * 109.03653 * 303.01893 * 5 4 2 27 27 C 1.53090 * 109.16077 * 56.98487 * 26 5 4 28 28 O 1.42903 * 109.41374 * 302.38301 * 27 26 5 29 29 H 1.09002 * 109.46710 * 299.97484 * 1 2 3 30 30 H 1.08990 * 109.47080 * 59.97059 * 1 2 3 31 31 H 1.08997 * 109.46942 * 179.97438 * 1 2 3 32 32 H 1.09008 * 109.52247 * 57.68525 * 4 2 1 33 33 H 1.08996 * 109.57590 * 297.52640 * 4 2 1 34 34 H 1.09003 * 109.47281 * 304.56959 * 7 5 4 35 35 H 1.09000 * 109.46934 * 64.57373 * 7 5 4 36 36 H 0.97005 * 120.00123 * 242.20936 * 11 8 7 37 37 H 1.08002 * 120.25598 * 359.97438 * 13 12 11 38 38 H 1.07998 * 120.66071 * 179.97438 * 14 13 12 39 39 H 1.07997 * 120.42492 * 179.97438 * 15 14 13 40 40 H 0.97001 * 120.00034 * 185.01120 * 20 19 17 41 41 H 1.08996 * 109.51848 * 176.88622 * 26 5 4 42 42 H 1.08993 * 109.52382 * 297.07643 * 26 5 4 43 43 H 1.08999 * 109.48088 * 182.40910 * 27 26 5 44 44 H 1.08993 * 109.49412 * 62.37363 * 27 26 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5712 -0.7708 1.2121 6 1 3.9690 0.2435 1.2407 7 6 4.0879 -1.5575 2.4184 8 16 5.9008 -1.4996 2.4464 9 8 6.4429 -2.3817 1.4732 10 8 6.3553 -0.1575 2.5527 11 7 6.3138 -2.1867 3.8955 12 6 5.9821 -3.5093 4.1562 13 6 5.3523 -4.2707 3.1673 14 6 5.0225 -5.5911 3.4295 15 6 5.3299 -6.1184 4.6715 16 6 5.9636 -5.3020 5.6241 17 6 6.2831 -5.8265 6.8968 18 1 6.1577 -6.8810 7.0932 19 6 6.7622 -4.9790 7.9032 20 7 6.7709 -3.6847 7.7186 21 14 7.3890 -5.6976 9.5095 22 1 8.5300 -6.6070 9.2331 23 1 7.8375 -4.5985 10.4018 24 1 6.2983 -6.4584 10.1704 25 7 6.2701 -4.0334 5.3324 26 6 4.0176 -1.4602 -0.0810 27 6 3.4307 -0.7094 -1.2791 28 8 2.0066 -0.6743 -1.1664 29 1 -0.3633 0.5135 0.8902 30 1 -0.3633 0.5142 -0.8896 31 1 -0.3633 -1.0276 -0.0005 32 1 1.6443 -1.7374 1.2710 33 1 1.7150 -0.1852 2.1404 34 1 3.6961 -1.1162 3.3348 35 1 3.7586 -2.5939 2.3444 36 1 6.7874 -1.6650 4.5621 37 1 5.1245 -3.8334 2.2064 38 1 4.5353 -6.1964 2.6794 39 1 5.0852 -7.1438 4.9060 40 1 7.1690 -3.1025 8.3846 41 1 5.1058 -1.4499 -0.1422 42 1 3.6613 -2.4902 -0.0864 43 1 3.7099 -1.2204 -2.2005 44 1 3.8192 0.3088 -1.2961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364957646.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:01:29 Heat of formation + Delta-G solvation = -94.283549 kcal Electronic energy + Delta-G solvation = -28063.171848 eV Core-core repulsion = 24107.207829 eV Total energy + Delta-G solvation = -3955.964018 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.80825 -38.63319 -36.92803 -35.84947 -35.21234 -34.77828 -33.28801 -33.00732 -30.66574 -29.23279 -28.95935 -27.27856 -25.66696 -23.74160 -22.17180 -21.82012 -21.54844 -20.41728 -19.09876 -17.88843 -17.20167 -16.83592 -16.51118 -16.31131 -16.04479 -15.51449 -15.04040 -14.91790 -14.67662 -14.53669 -14.19711 -13.91761 -13.27953 -13.06364 -12.90247 -12.74742 -12.57368 -12.44906 -12.23922 -12.15787 -12.07719 -11.87066 -11.81752 -11.48574 -11.38000 -11.32905 -11.24822 -11.14617 -10.82757 -10.61878 -10.58534 -10.49248 -10.24159 -10.12155 -9.64677 -9.34329 -8.28713 -7.84347 -7.34049 -6.62874 -4.67752 0.39298 2.59927 2.85237 2.93268 3.01814 3.03360 3.10981 3.54617 3.82991 3.85116 4.22341 4.31266 4.43066 4.52798 4.61786 4.69956 4.92650 4.96582 5.04797 5.14644 5.25340 5.31290 5.41102 5.45010 5.52527 5.56971 5.60671 5.74545 5.76950 5.78262 5.89304 5.93278 6.01759 6.09732 6.31647 6.45059 6.63272 6.99688 7.00598 7.02478 7.32714 7.54474 7.58012 7.92381 8.08632 8.52366 8.75755 9.87049 10.14607 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019604 B = 0.002912 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.944830 B = 9613.696711 C = 9862.843977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.083 3.917 3 H 0.059 0.941 4 C -0.137 4.137 5 C -0.077 4.077 6 H 0.086 0.914 7 C -0.627 4.627 8 S 2.617 3.383 9 O -0.942 6.942 10 O -0.965 6.965 11 N -1.035 6.035 12 C 0.391 3.609 13 C -0.373 4.373 14 C -0.023 4.023 15 C -0.296 4.296 16 C 0.285 3.715 17 C -0.426 4.426 18 H 0.088 0.912 19 C 0.072 3.928 20 N -0.717 5.717 21 Si 0.909 3.091 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.264 1.264 25 N -0.509 5.509 26 C -0.180 4.180 27 C 0.065 3.935 28 O -0.379 6.379 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.149 0.851 36 H 0.424 0.576 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.277 0.723 41 H 0.083 0.917 42 H 0.089 0.911 43 H 0.100 0.900 44 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.668 7.530 -9.917 15.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.025 3.975 3 H 0.077 0.923 4 C -0.176 4.176 5 C -0.097 4.097 6 H 0.104 0.896 7 C -0.757 4.757 8 S 2.710 3.290 9 O -0.932 6.932 10 O -0.955 6.955 11 N -0.785 5.785 12 C 0.151 3.849 13 C -0.399 4.399 14 C -0.048 4.048 15 C -0.319 4.319 16 C 0.160 3.840 17 C -0.457 4.457 18 H 0.106 0.894 19 C -0.154 4.154 20 N -0.338 5.338 21 Si 0.733 3.267 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.188 1.188 25 N -0.229 5.229 26 C -0.217 4.217 27 C -0.011 4.011 28 O -0.299 6.299 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.155 0.845 35 H 0.167 0.833 36 H 0.260 0.740 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.102 0.898 42 H 0.108 0.892 43 H 0.118 0.882 44 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -7.845 8.426 -10.029 15.268 hybrid contribution -0.163 -0.656 1.076 1.270 sum -8.008 7.770 -8.953 14.306 Atomic orbital electron populations 1.21764 0.92920 1.03111 1.02405 1.22142 0.95197 0.95058 0.85067 0.92271 1.22255 0.93779 1.02847 0.98686 1.20934 0.97788 0.98983 0.91960 0.89572 1.30783 1.26847 1.11348 1.06678 1.04873 0.77723 0.73278 0.73147 1.93621 1.75424 1.65338 1.58845 1.93575 1.79716 1.36420 1.85783 1.53257 1.69032 1.19138 1.37034 1.18020 0.91877 0.83161 0.91852 1.20897 1.21284 0.98165 0.99555 1.20574 0.95229 0.93422 0.95531 1.21669 1.13032 1.00926 0.96318 1.18234 0.87255 0.85991 0.92559 1.19626 1.36510 0.95783 0.93739 0.89381 1.26070 0.94522 0.94536 1.00321 1.69996 1.27180 1.03733 1.32881 0.86355 0.80079 0.79603 0.80647 1.18806 1.20185 1.18817 1.68112 1.25386 1.14163 1.15205 1.22664 1.02309 1.01967 0.94793 1.22530 0.80836 0.99605 0.98171 1.87932 1.21000 1.78010 1.42916 0.91018 0.91847 0.91651 0.90158 0.90286 0.84522 0.83315 0.73971 0.87675 0.87833 0.87879 0.91159 0.89848 0.89234 0.88186 0.92904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.13 9.57 37.16 0.36 -0.78 16 2 C 0.08 0.79 3.26 -26.68 -0.09 0.70 16 3 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 4 C -0.14 -1.36 4.71 -26.59 -0.13 -1.49 16 5 C -0.08 -0.88 2.27 -90.43 -0.21 -1.09 16 6 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 7 C -0.63 -8.26 5.01 37.16 0.19 -8.07 16 8 S 2.62 43.99 4.36 -107.50 -0.47 43.52 16 9 O -0.94 -18.02 14.27 -57.54 -0.82 -18.84 16 10 O -0.96 -17.43 18.08 -57.54 -1.04 -18.47 16 11 N -1.03 -20.43 5.76 31.15 0.18 -20.25 16 12 C 0.39 9.09 7.48 -155.33 -1.16 7.93 16 13 C -0.37 -8.07 7.83 -38.87 -0.30 -8.38 16 14 C -0.02 -0.50 10.15 -39.39 -0.40 -0.90 16 15 C -0.30 -6.95 9.83 -38.65 -0.38 -7.33 16 16 C 0.29 7.48 6.51 -85.00 -0.55 6.93 16 17 C -0.43 -10.85 9.13 -37.74 -0.34 -11.19 16 18 H 0.09 2.08 7.86 -52.49 -0.41 1.66 16 19 C 0.07 1.74 5.46 -17.35 -0.09 1.64 16 20 N -0.72 -18.11 11.58 55.55 0.64 -17.47 16 21 Si 0.91 17.79 29.57 -169.99 -5.03 12.77 16 22 H -0.26 -5.15 7.11 56.52 0.40 -4.74 16 23 H -0.28 -5.31 7.11 56.52 0.40 -4.91 16 24 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 25 N -0.51 -13.40 8.02 -10.33 -0.08 -13.48 16 26 C -0.18 -2.09 5.05 -26.59 -0.13 -2.22 16 27 C 0.07 0.66 6.84 37.20 0.25 0.91 16 28 O -0.38 -4.26 10.41 -35.23 -0.37 -4.63 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.08 0.83 8.14 -51.92 -0.42 0.41 16 33 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.14 1.58 8.14 -51.92 -0.42 1.16 16 35 H 0.15 1.99 5.99 -51.92 -0.31 1.68 16 36 H 0.42 8.09 8.91 -34.48 -0.31 7.78 16 37 H 0.11 2.01 4.25 -52.49 -0.22 1.79 16 38 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 39 H 0.10 2.21 8.06 -52.49 -0.42 1.78 16 40 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 41 H 0.08 1.02 6.22 -51.93 -0.32 0.70 16 42 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 LS Contribution 363.68 15.07 5.48 5.48 Total: -1.00 -31.72 363.68 -10.70 -42.43 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: -6.21 Total: 12.29 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -2.99 Total: -23.34 kcal Atomic # 7 Polarization: -51.94 SS G_CDS: 0.74 Total: -51.20 kcal Atomic # 8 Polarization: -39.72 SS G_CDS: -2.23 Total: -41.95 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.77 kcal Atomic # 16 Polarization: 43.99 SS G_CDS: -0.47 Total: 43.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.72 -10.70 -42.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364957646.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.855 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds