Wall clock time and date at job start Wed Apr 1 2020 00:20:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35784 * 117.00081 * 2 1 4 4 C 1.38023 * 123.47365 * 0.19585 * 3 2 1 5 5 C 1.33609 * 115.08419 * 180.27319 * 4 3 2 6 6 S 1.70576 * 111.14815 * 359.74939 * 5 4 3 7 7 C 1.37269 * 123.46903 * 180.02562 * 3 2 1 8 8 C 1.41721 * 125.47611 * 0.02562 * 7 3 2 9 9 O 1.21771 * 120.00135 * 48.43547 * 8 7 3 10 10 N 1.34779 * 120.00227 * 228.43603 * 8 7 3 11 11 C 1.47153 * 120.98160 * 355.94859 * 10 8 7 12 12 C 1.53295 * 108.38667 * 129.48590 * 11 10 8 13 13 O 1.42963 * 109.22122 * 52.30107 * 12 11 10 14 14 C 1.42955 * 114.16833 * 297.41750 * 13 12 11 15 15 H 1.09004 * 109.51361 * 302.61298 * 14 13 12 16 16 C 1.53001 * 109.51376 * 182.50736 * 14 13 12 17 17 H 1.08999 * 109.47216 * 180.02562 * 16 14 13 18 18 C 1.52999 * 109.47054 * 60.00128 * 16 14 13 19 19 N 1.46494 * 109.46856 * 299.99878 * 16 14 13 20 20 C 1.36941 * 120.00223 * 204.99975 * 19 16 14 21 21 H 1.08001 * 119.99630 * 359.97438 * 20 19 16 22 22 C 1.38808 * 120.00350 * 180.02562 * 20 19 16 23 23 N 1.31620 * 119.99913 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00076 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47487 * 89.99824 * 24 22 20 26 26 H 1.48504 * 109.47437 * 209.99839 * 24 22 20 27 27 H 1.48502 * 109.47092 * 329.99741 * 24 22 20 28 28 C 1.47151 * 120.98528 * 175.96667 * 10 8 7 29 29 H 1.09001 * 109.47358 * 60.00197 * 1 2 3 30 30 H 1.09004 * 109.47755 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47519 * 300.00641 * 1 2 3 32 32 H 1.08003 * 122.45457 * 0.02562 * 4 3 2 33 33 H 1.08002 * 124.42673 * 179.74771 * 5 4 3 34 34 H 1.09000 * 109.67988 * 9.75954 * 11 10 8 35 35 H 1.09001 * 109.70801 * 249.22773 * 11 10 8 36 36 H 1.09000 * 109.51122 * 292.37499 * 12 11 10 37 37 H 1.08995 * 109.50858 * 172.22451 * 12 11 10 38 38 H 1.09003 * 109.46635 * 180.02562 * 18 16 14 39 39 H 1.08995 * 109.47219 * 60.00234 * 18 16 14 40 40 H 1.08999 * 109.47082 * 300.00048 * 18 16 14 41 41 H 0.97005 * 120.00304 * 24.99965 * 19 16 14 42 42 H 0.97006 * 119.99830 * 179.97438 * 23 22 20 43 43 H 1.08999 * 109.68201 * 110.78684 * 28 10 8 44 44 H 1.09005 * 109.67952 * 350.23687 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0454 1.2098 0.0000 4 6 1.3652 2.4108 0.0039 5 6 2.1390 3.5000 -0.0025 6 16 3.7923 3.0804 -0.0071 7 6 3.4094 1.3645 -0.0005 8 6 4.3566 0.3104 -0.0016 9 8 4.2429 -0.6097 -0.7912 10 7 5.3835 0.3261 0.8712 11 6 5.5925 1.4689 1.7744 12 6 5.7550 0.9338 3.2017 13 8 6.7656 -0.0774 3.2130 14 6 6.4557 -1.2234 2.4165 15 1 5.5141 -1.6571 2.7534 16 6 7.5736 -2.2589 2.5543 17 1 7.3369 -3.1321 1.9464 18 6 7.7034 -2.6773 4.0202 19 7 8.8380 -1.6758 2.0990 20 6 9.8413 -2.4881 1.6417 21 1 9.7004 -3.5586 1.6172 22 6 11.0396 -1.9357 1.2108 23 7 11.2114 -0.6311 1.2412 24 14 12.4083 -3.0437 0.5878 25 1 12.2587 -3.2397 -0.8766 26 1 13.7229 -2.4138 0.8712 27 1 12.3314 -4.3587 1.2736 28 6 6.3290 -0.7987 0.9490 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3635 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 0.2866 2.4660 0.0077 33 1 1.7663 4.5137 -0.0046 34 1 4.7314 2.1356 1.7281 35 1 6.4919 2.0100 1.4805 36 1 4.8105 0.5085 3.5408 37 1 6.0474 1.7481 3.8646 38 1 8.5001 -3.4147 4.1183 39 1 6.7626 -3.1111 4.3589 40 1 7.9403 -1.8039 4.6277 41 1 8.9647 -0.7143 2.1213 42 1 12.0490 -0.2451 0.9404 43 1 7.3028 -0.4865 0.5718 44 1 5.9556 -1.6338 0.3562 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485650265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:02 Heat of formation + Delta-G solvation = -73.984456 kcal Electronic energy + Delta-G solvation = -28207.941206 eV Core-core repulsion = 24252.857422 eV Total energy + Delta-G solvation = -3955.083783 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.72726 -40.74773 -39.45948 -37.10491 -36.98154 -35.78616 -34.18147 -32.09692 -31.18855 -30.13144 -29.02205 -27.77936 -26.10140 -25.59879 -24.95207 -23.73329 -21.70709 -21.19592 -20.53512 -19.49771 -19.14769 -18.10234 -17.78952 -17.44266 -17.04807 -16.63974 -16.55095 -16.25659 -16.07115 -15.81067 -15.67562 -15.12086 -14.90612 -14.77383 -14.60958 -14.28725 -14.10570 -13.88591 -13.48820 -13.40731 -13.10417 -12.96825 -12.75658 -12.57279 -12.55333 -12.49830 -12.16518 -12.02922 -11.98551 -11.78961 -11.68563 -11.53848 -11.16874 -11.02046 -10.93413 -9.87451 -9.57832 -9.07896 -8.94048 -7.88478 -5.15817 -0.44645 0.27108 0.83185 1.34941 1.48232 1.49953 1.57762 1.71842 2.02065 2.52642 2.58790 2.77512 3.44989 3.53993 3.68703 3.83542 3.92411 3.94450 4.04745 4.11890 4.16634 4.28241 4.29137 4.30458 4.37370 4.51271 4.60963 4.62239 4.69704 4.74080 4.78921 4.84133 4.87329 4.98336 5.08925 5.10760 5.21129 5.30500 5.54868 5.60880 6.17969 6.23404 6.29850 6.33697 6.99165 7.40223 8.15591 8.41856 9.34814 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017356 B = 0.002978 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.856879 B = 9401.467553 C = 9593.360178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.323 6.323 3 C 0.177 3.823 4 C -0.215 4.215 5 C -0.182 4.182 6 S 0.265 5.735 7 C -0.376 4.376 8 C 0.596 3.404 9 O -0.580 6.580 10 N -0.609 5.609 11 C 0.060 3.940 12 C 0.047 3.953 13 O -0.380 6.380 14 C 0.094 3.906 15 H 0.074 0.926 16 C 0.174 3.826 17 H 0.057 0.943 18 C -0.147 4.147 19 N -0.726 5.726 20 C -0.236 4.236 21 H 0.075 0.925 22 C -0.075 4.075 23 N -0.966 5.966 24 Si 0.968 3.032 25 H -0.291 1.291 26 H -0.296 1.296 27 H -0.270 1.270 28 C 0.097 3.903 29 H 0.072 0.928 30 H 0.110 0.890 31 H 0.078 0.922 32 H 0.181 0.819 33 H 0.216 0.784 34 H 0.119 0.881 35 H 0.079 0.921 36 H 0.063 0.937 37 H 0.135 0.865 38 H 0.039 0.961 39 H 0.066 0.934 40 H 0.047 0.953 41 H 0.378 0.622 42 H 0.249 0.751 43 H 0.061 0.939 44 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.665 12.377 2.384 29.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.236 6.236 3 C 0.116 3.884 4 C -0.247 4.247 5 C -0.320 4.320 6 S 0.531 5.469 7 C -0.494 4.494 8 C 0.386 3.614 9 O -0.462 6.462 10 N -0.342 5.342 11 C -0.062 4.062 12 C -0.030 4.030 13 O -0.298 6.298 14 C 0.035 3.965 15 H 0.091 0.909 16 C 0.065 3.935 17 H 0.075 0.925 18 C -0.207 4.207 19 N -0.367 5.367 20 C -0.368 4.368 21 H 0.092 0.908 22 C -0.267 4.267 23 N -0.617 5.617 24 Si 0.798 3.202 25 H -0.219 1.219 26 H -0.223 1.223 27 H -0.195 1.195 28 C -0.026 4.026 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.097 0.903 32 H 0.198 0.802 33 H 0.233 0.767 34 H 0.137 0.863 35 H 0.097 0.903 36 H 0.081 0.919 37 H 0.152 0.848 38 H 0.059 0.941 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.211 0.789 42 H 0.057 0.943 43 H 0.080 0.920 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -25.065 12.383 2.020 28.030 hybrid contribution -0.517 -1.152 -0.760 1.474 sum -25.583 11.231 1.260 27.968 Atomic orbital electron populations 1.23472 0.75428 1.05687 1.03135 1.86172 1.24195 1.25770 1.87469 1.18581 0.89729 0.86540 0.93570 1.20209 1.03564 0.89357 1.11573 1.25656 0.98259 1.05332 1.02726 1.83242 1.04445 0.91283 1.67973 1.22500 0.95511 1.00323 1.31106 1.16125 0.80236 0.85294 0.79697 1.90791 1.75651 1.39260 1.40486 1.48200 1.27641 1.20642 1.37748 1.22967 1.04170 0.88401 0.90705 1.23173 0.92297 0.92215 0.95362 1.88055 1.44717 1.28770 1.68271 1.22602 0.98147 0.87222 0.88516 0.90866 1.20487 0.84886 0.93183 0.94973 0.92465 1.22157 1.00680 1.00575 0.97277 1.42485 1.12020 1.06256 1.75944 1.19622 0.93629 0.90853 1.32680 0.90754 1.25471 1.00510 0.96985 1.03709 1.69833 1.25928 1.10688 1.55285 0.85216 0.78849 0.78311 0.77849 1.21887 1.22299 1.19487 1.22067 0.92360 0.89777 0.98365 0.90912 0.87134 0.90324 0.80186 0.76703 0.86332 0.90266 0.91867 0.84765 0.94149 0.91477 0.93412 0.78918 0.94254 0.92027 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.94 113.37 1.13 1.34 16 2 O -0.32 -8.25 10.24 -91.13 -0.93 -9.18 16 3 C 0.18 4.13 6.70 21.99 0.15 4.28 16 4 C -0.22 -2.91 9.17 21.17 0.19 -2.71 16 5 C -0.18 -1.89 10.90 66.77 0.73 -1.16 16 6 S 0.27 4.48 20.05 -56.49 -1.13 3.34 16 7 C -0.38 -10.26 5.18 22.90 0.12 -10.14 16 8 C 0.60 21.68 7.20 85.10 0.61 22.30 16 9 O -0.58 -26.29 16.42 -4.58 -0.08 -26.37 16 10 N -0.61 -20.85 3.02 -827.79 -2.50 -23.35 16 11 C 0.06 1.56 5.98 86.35 0.52 2.08 16 12 C 0.05 1.16 6.99 72.08 0.50 1.66 16 13 O -0.38 -13.26 9.22 -148.98 -1.37 -14.64 16 14 C 0.09 3.44 2.53 30.69 0.08 3.52 16 15 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 16 C 0.17 7.24 2.74 44.99 0.12 7.36 16 17 H 0.06 2.40 8.08 -2.39 -0.02 2.38 16 18 C -0.15 -5.49 9.35 71.98 0.67 -4.82 16 19 N -0.73 -37.74 4.28 -322.95 -1.38 -39.13 16 20 C -0.24 -13.43 9.93 84.03 0.83 -12.59 16 21 H 0.07 4.07 7.83 -2.91 -0.02 4.05 16 22 C -0.07 -4.39 5.50 84.86 0.47 -3.92 16 23 N -0.97 -60.53 13.06 21.65 0.28 -60.25 16 24 Si 0.97 47.69 29.55 68.60 2.03 49.72 16 25 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 26 H -0.30 -14.65 7.11 99.48 0.71 -13.95 16 27 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 28 C 0.10 3.89 5.85 86.35 0.51 4.39 16 29 H 0.07 0.67 7.89 -2.39 -0.02 0.65 16 30 H 0.11 1.17 8.14 -2.38 -0.02 1.15 16 31 H 0.08 0.62 7.87 -2.39 -0.02 0.60 16 32 H 0.18 1.21 6.99 -2.91 -0.02 1.19 16 33 H 0.22 0.42 8.06 -2.91 -0.02 0.40 16 34 H 0.12 2.36 4.41 -12.86 -0.06 2.30 16 35 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 36 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 37 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 38 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 39 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.05 1.85 7.68 -2.39 -0.02 1.84 16 41 H 0.38 21.34 7.20 -92.70 -0.67 20.68 16 42 H 0.25 15.14 8.31 -92.70 -0.77 14.37 16 43 H 0.06 2.88 7.26 -2.39 -0.02 2.87 16 44 H 0.08 3.32 7.11 -2.38 -0.02 3.30 16 Total: -1.00 -81.80 370.80 1.85 -79.95 By element: Atomic # 1 Polarization: 28.02 SS G_CDS: 0.31 Total: 28.33 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 6.63 Total: 11.57 kcal Atomic # 7 Polarization: -119.12 SS G_CDS: -3.60 Total: -122.73 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -2.38 Total: -50.18 kcal Atomic # 14 Polarization: 47.69 SS G_CDS: 2.03 Total: 49.72 kcal Atomic # 16 Polarization: 4.48 SS G_CDS: -1.13 Total: 3.34 kcal Total: -81.80 1.85 -79.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485650265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.961 kcal (2) G-P(sol) polarization free energy of solvation -81.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.945 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds