Wall clock time and date at job start Wed Apr 1 2020 00:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35786 * 116.99912 * 2 1 4 4 C 1.38025 * 123.47152 * 0.19914 * 3 2 1 5 5 C 1.33614 * 115.08159 * 180.26877 * 4 3 2 6 6 S 1.70586 * 111.14721 * 359.75454 * 5 4 3 7 7 C 1.37273 * 123.46886 * 180.02562 * 3 2 1 8 8 C 1.41727 * 125.47215 * 0.02562 * 7 3 2 9 9 O 1.21776 * 119.99620 * 48.47123 * 8 7 3 10 10 N 1.34772 * 120.00027 * 228.46038 * 8 7 3 11 11 C 1.47156 * 120.97909 * 355.92272 * 10 8 7 12 12 C 1.53298 * 108.37915 * 129.48705 * 11 10 8 13 13 O 1.42962 * 109.22291 * 52.30430 * 12 11 10 14 14 C 1.42957 * 114.16396 * 297.41341 * 13 12 11 15 15 H 1.09004 * 109.55943 * 302.63502 * 14 13 12 16 16 C 1.53004 * 109.51188 * 182.50895 * 14 13 12 17 17 H 1.09003 * 109.47449 * 185.25927 * 16 14 13 18 18 C 1.53008 * 109.46879 * 305.25457 * 16 14 13 19 19 N 1.46497 * 109.47342 * 65.25195 * 16 14 13 20 20 C 1.36936 * 119.99986 * 154.72355 * 19 16 14 21 21 H 1.08002 * 120.00026 * 0.02562 * 20 19 16 22 22 C 1.38812 * 120.00044 * 180.02562 * 20 19 16 23 23 N 1.31617 * 120.00122 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00166 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47126 * 59.99463 * 24 22 20 26 26 H 1.48496 * 109.47452 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46952 * 300.00073 * 24 22 20 28 28 C 1.47151 * 120.98178 * 175.94534 * 10 8 7 29 29 H 1.09001 * 109.47411 * 59.99532 * 1 2 3 30 30 H 1.08997 * 109.47453 * 180.02562 * 1 2 3 31 31 H 1.09011 * 109.46837 * 300.00130 * 1 2 3 32 32 H 1.07995 * 122.45612 * 0.02589 * 4 3 2 33 33 H 1.07996 * 124.42547 * 179.74298 * 5 4 3 34 34 H 1.09002 * 109.68385 * 249.20671 * 11 10 8 35 35 H 1.08996 * 109.68672 * 9.76353 * 11 10 8 36 36 H 1.09003 * 109.51240 * 172.22533 * 12 11 10 37 37 H 1.08998 * 109.51579 * 292.32319 * 12 11 10 38 38 H 1.08993 * 109.46671 * 180.02562 * 18 16 14 39 39 H 1.09006 * 109.46989 * 300.00066 * 18 16 14 40 40 H 1.08997 * 109.46754 * 60.00411 * 18 16 14 41 41 H 0.96994 * 120.00117 * 335.00773 * 19 16 14 42 42 H 0.97000 * 120.00036 * 180.02562 * 23 22 20 43 43 H 1.09007 * 109.67695 * 110.78973 * 28 10 8 44 44 H 1.09001 * 109.71347 * 350.25920 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.3652 2.4108 0.0040 5 6 2.1390 3.5001 -0.0024 6 16 3.7924 3.0805 -0.0071 7 6 3.4095 1.3646 -0.0005 8 6 4.3567 0.3104 -0.0016 9 8 4.2432 -0.6093 -0.7917 10 7 5.3832 0.3259 0.8715 11 6 5.5922 1.4687 1.7747 12 6 5.7541 0.9336 3.2020 13 8 6.7644 -0.0779 3.2137 14 6 6.4544 -1.2238 2.4172 15 1 5.5125 -1.6576 2.7528 16 6 7.5720 -2.2597 2.5553 17 1 7.3821 -3.0918 1.8773 18 6 8.9134 -1.6124 2.2050 19 7 7.6131 -2.7529 3.9342 20 6 8.1265 -3.9936 4.2025 21 1 8.5015 -4.6085 3.3977 22 6 8.1649 -4.4612 5.5090 23 7 7.7074 -3.7121 6.4897 24 14 8.8660 -6.1535 5.8752 25 1 10.2824 -6.2089 5.4324 26 1 8.7937 -6.4139 7.3353 27 1 8.0797 -7.1827 5.1487 28 6 6.3284 -0.7993 0.9496 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 0.2867 2.4660 0.0078 33 1 1.7663 4.5137 -0.0044 34 1 6.4922 2.0090 1.4809 35 1 4.7314 2.1357 1.7281 36 1 6.0465 1.7478 3.8652 37 1 4.8091 0.5093 3.5413 38 1 9.7094 -2.3504 2.3030 39 1 8.8829 -1.2454 1.1791 40 1 9.1034 -0.7804 2.8831 41 1 7.2728 -2.2022 4.6565 42 1 7.7346 -4.0387 7.4027 43 1 7.3024 -0.4873 0.5727 44 1 5.9556 -1.6344 0.3565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485650266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:05 Heat of formation + Delta-G solvation = -47.891094 kcal Electronic energy + Delta-G solvation = -27973.172399 eV Core-core repulsion = 24019.220108 eV Total energy + Delta-G solvation = -3953.952290 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.71052 -39.79519 -38.19882 -36.27625 -35.45425 -34.44247 -32.49556 -30.90052 -30.06191 -28.43671 -27.75616 -26.74241 -25.16573 -24.45660 -23.42182 -22.49839 -20.70926 -19.87192 -19.52256 -18.34776 -17.27030 -17.11367 -16.80739 -16.18903 -16.03316 -15.71034 -15.31957 -15.20197 -14.86052 -14.47678 -14.31135 -14.17989 -13.71869 -13.43127 -13.29762 -13.21758 -12.80978 -12.66620 -12.42371 -12.13874 -11.95486 -11.91030 -11.42140 -11.32899 -11.24713 -11.06857 -10.78654 -10.67796 -10.47522 -10.25656 -10.07798 -9.81705 -9.76326 -9.59514 -9.07333 -8.84149 -8.42289 -8.34553 -6.88123 -5.68557 -2.97038 0.26161 1.00146 1.42298 2.07907 2.73481 3.03986 3.29246 3.49265 3.53316 3.54409 4.04197 4.24917 4.58803 4.63358 4.75577 4.82151 4.83157 4.83329 4.97359 5.12928 5.17029 5.19334 5.27570 5.40656 5.41912 5.51985 5.64559 5.74809 5.75008 5.79012 5.90722 6.04708 6.07270 6.27993 6.45585 6.52925 6.71778 6.88638 6.90839 7.22061 7.33149 7.54009 7.76198 8.13379 8.49783 9.61463 10.19585 10.56418 11.53920 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018267 B = 0.002748 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.485463 B =10186.478106 C =10716.028758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.284 6.284 3 C 0.177 3.823 4 C -0.206 4.206 5 C -0.213 4.213 6 S 0.243 5.757 7 C -0.320 4.320 8 C 0.600 3.400 9 O -0.523 6.523 10 N -0.609 5.609 11 C 0.062 3.938 12 C 0.049 3.951 13 O -0.357 6.357 14 C 0.076 3.924 15 H 0.064 0.936 16 C 0.185 3.815 17 H 0.059 0.941 18 C -0.162 4.162 19 N -0.719 5.719 20 C -0.238 4.238 21 H 0.070 0.930 22 C -0.014 4.014 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.292 1.292 27 H -0.286 1.286 28 C 0.085 3.915 29 H 0.057 0.943 30 H 0.104 0.896 31 H 0.057 0.943 32 H 0.150 0.850 33 H 0.174 0.826 34 H 0.080 0.920 35 H 0.092 0.908 36 H 0.104 0.896 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.035 0.965 40 H 0.057 0.943 41 H 0.389 0.611 42 H 0.255 0.745 43 H 0.081 0.919 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.102 19.621 -13.898 27.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.196 6.196 3 C 0.117 3.883 4 C -0.239 4.239 5 C -0.350 4.350 6 S 0.509 5.491 7 C -0.440 4.440 8 C 0.389 3.611 9 O -0.400 6.400 10 N -0.344 5.344 11 C -0.062 4.062 12 C -0.029 4.029 13 O -0.275 6.275 14 C 0.017 3.983 15 H 0.082 0.918 16 C 0.074 3.926 17 H 0.077 0.923 18 C -0.222 4.222 19 N -0.361 5.361 20 C -0.369 4.369 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.218 1.218 27 H -0.213 1.213 28 C -0.037 4.037 29 H 0.075 0.925 30 H 0.123 0.877 31 H 0.075 0.925 32 H 0.167 0.833 33 H 0.191 0.809 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.122 0.878 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.054 0.946 40 H 0.076 0.924 41 H 0.223 0.777 42 H 0.064 0.936 43 H 0.100 0.900 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -12.516 19.586 -14.220 27.248 hybrid contribution -1.754 -1.189 0.439 2.164 sum -14.269 18.397 -13.780 27.055 Atomic orbital electron populations 1.23176 0.77857 1.04597 1.01316 1.86235 1.21427 1.24408 1.87523 1.18157 0.89932 0.85555 0.94656 1.20023 1.02089 0.90825 1.10994 1.25126 0.99732 1.03750 1.06422 1.83200 1.03049 0.94575 1.68309 1.22547 0.95474 0.98811 1.27150 1.15576 0.79935 0.84958 0.80680 1.90849 1.74015 1.36632 1.38546 1.48083 1.28476 1.20409 1.37405 1.22782 1.02903 0.88933 0.91564 1.22865 0.93182 0.92444 0.94455 1.88093 1.42320 1.28083 1.69033 1.22981 1.00295 0.86888 0.88175 0.91848 1.20199 0.90973 0.91786 0.89614 0.92275 1.22408 0.99858 1.01210 0.98705 1.42345 1.74096 1.17914 1.01706 1.19214 1.32747 0.92608 0.92368 0.91221 1.24730 1.02043 0.98436 0.95739 1.69670 1.52120 1.37042 0.99173 0.86283 0.78867 0.84256 0.76868 1.21311 1.21775 1.21316 1.22492 0.92767 0.89806 0.98644 0.92483 0.87739 0.92473 0.83269 0.80854 0.90131 0.89043 0.87806 0.92869 0.92926 0.94635 0.92430 0.77678 0.93565 0.90043 0.88155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.94 101.05 1.00 1.20 16 2 O -0.28 -3.68 10.24 -19.07 -0.20 -3.87 16 3 C 0.18 2.10 6.70 -40.01 -0.27 1.83 16 4 C -0.21 -1.68 9.17 -41.28 -0.38 -2.06 16 5 C -0.21 -1.42 10.90 29.11 0.32 -1.10 16 6 S 0.24 1.99 20.05 -107.50 -2.16 -0.17 16 7 C -0.32 -4.10 5.18 -38.60 -0.20 -4.30 16 8 C 0.60 9.58 7.20 -14.93 -0.11 9.47 16 9 O -0.52 -10.23 16.43 5.12 0.08 -10.15 16 10 N -0.61 -8.92 3.02 -175.64 -0.53 -9.45 16 11 C 0.06 0.72 5.98 -3.53 -0.02 0.70 16 12 C 0.05 0.65 6.98 37.31 0.26 0.91 16 13 O -0.36 -6.28 9.24 -35.23 -0.33 -6.60 16 14 C 0.08 1.37 2.61 -26.58 -0.07 1.30 16 15 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 16 C 0.18 3.83 2.77 -67.93 -0.19 3.65 16 17 H 0.06 1.22 8.08 -51.93 -0.42 0.81 16 18 C -0.16 -3.06 9.06 37.16 0.34 -2.73 16 19 N -0.72 -18.68 5.10 -53.42 -0.27 -18.95 16 20 C -0.24 -6.76 9.93 -15.06 -0.15 -6.91 16 21 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 22 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 23 N -0.93 -28.74 13.06 55.49 0.72 -28.01 16 24 Si 0.91 22.82 29.55 -169.99 -5.02 17.80 16 25 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 28 C 0.09 1.35 5.81 -3.53 -0.02 1.33 16 29 H 0.06 0.33 7.89 -51.93 -0.41 -0.08 16 30 H 0.10 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.33 7.87 -51.92 -0.41 -0.08 16 32 H 0.15 0.83 6.99 -52.49 -0.37 0.46 16 33 H 0.17 0.61 8.06 -52.49 -0.42 0.18 16 34 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 35 H 0.09 0.88 4.41 -35.46 -0.16 0.72 16 36 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 37 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 40 H 0.06 1.14 7.55 -51.93 -0.39 0.75 16 41 H 0.39 10.87 7.59 -40.82 -0.31 10.56 16 42 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 43 H 0.08 1.21 6.27 -51.92 -0.33 0.88 16 44 H 0.10 1.69 7.11 -51.93 -0.37 1.32 16 LS Contribution 369.00 15.07 5.56 5.56 Total: -1.00 -36.10 369.00 -7.71 -43.81 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -6.00 Total: 7.22 kcal Atomic # 6 Polarization: 2.39 SS G_CDS: 0.42 Total: 2.81 kcal Atomic # 7 Polarization: -56.34 SS G_CDS: -0.08 Total: -56.41 kcal Atomic # 8 Polarization: -20.18 SS G_CDS: -0.44 Total: -20.62 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.16 Total: -0.17 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -36.10 -7.71 -43.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485650266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.086 kcal (2) G-P(sol) polarization free energy of solvation -36.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds