Wall clock time and date at job start Wed Apr 1 2020 00:20:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35786 * 116.99912 * 2 1 4 4 C 1.38025 * 123.47152 * 0.19914 * 3 2 1 5 5 C 1.33614 * 115.08159 * 180.26877 * 4 3 2 6 6 S 1.70586 * 111.14721 * 359.75454 * 5 4 3 7 7 C 1.37273 * 123.46886 * 180.02562 * 3 2 1 8 8 C 1.41727 * 125.47215 * 0.02562 * 7 3 2 9 9 O 1.21776 * 119.99620 * 48.47123 * 8 7 3 10 10 N 1.34772 * 120.00027 * 228.46038 * 8 7 3 11 11 C 1.47156 * 120.97909 * 355.92272 * 10 8 7 12 12 C 1.53298 * 108.37915 * 129.48705 * 11 10 8 13 13 O 1.42962 * 109.22291 * 52.30430 * 12 11 10 14 14 C 1.42957 * 114.16396 * 297.41341 * 13 12 11 15 15 H 1.09004 * 109.55943 * 302.63502 * 14 13 12 16 16 C 1.53004 * 109.51188 * 182.50895 * 14 13 12 17 17 H 1.09003 * 109.47449 * 185.25927 * 16 14 13 18 18 C 1.53008 * 109.46879 * 305.25457 * 16 14 13 19 19 N 1.46497 * 109.47342 * 65.25195 * 16 14 13 20 20 C 1.36936 * 119.99986 * 154.72355 * 19 16 14 21 21 H 1.08002 * 120.00026 * 0.02562 * 20 19 16 22 22 C 1.38812 * 120.00044 * 180.02562 * 20 19 16 23 23 N 1.31617 * 120.00122 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00166 * 180.02562 * 22 20 19 25 25 H 1.48507 * 109.47126 * 59.99463 * 24 22 20 26 26 H 1.48496 * 109.47452 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46952 * 300.00073 * 24 22 20 28 28 C 1.47151 * 120.98178 * 175.94534 * 10 8 7 29 29 H 1.09001 * 109.47411 * 59.99532 * 1 2 3 30 30 H 1.08997 * 109.47453 * 180.02562 * 1 2 3 31 31 H 1.09011 * 109.46837 * 300.00130 * 1 2 3 32 32 H 1.07995 * 122.45612 * 0.02589 * 4 3 2 33 33 H 1.07996 * 124.42547 * 179.74298 * 5 4 3 34 34 H 1.09002 * 109.68385 * 249.20671 * 11 10 8 35 35 H 1.08996 * 109.68672 * 9.76353 * 11 10 8 36 36 H 1.09003 * 109.51240 * 172.22533 * 12 11 10 37 37 H 1.08998 * 109.51579 * 292.32319 * 12 11 10 38 38 H 1.08993 * 109.46671 * 180.02562 * 18 16 14 39 39 H 1.09006 * 109.46989 * 300.00066 * 18 16 14 40 40 H 1.08997 * 109.46754 * 60.00411 * 18 16 14 41 41 H 0.96994 * 120.00117 * 335.00773 * 19 16 14 42 42 H 0.97000 * 120.00036 * 180.02562 * 23 22 20 43 43 H 1.09007 * 109.67695 * 110.78973 * 28 10 8 44 44 H 1.09001 * 109.71347 * 350.25920 * 28 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0455 1.2099 0.0000 4 6 1.3652 2.4108 0.0040 5 6 2.1390 3.5001 -0.0024 6 16 3.7924 3.0805 -0.0071 7 6 3.4095 1.3646 -0.0005 8 6 4.3567 0.3104 -0.0016 9 8 4.2432 -0.6093 -0.7917 10 7 5.3832 0.3259 0.8715 11 6 5.5922 1.4687 1.7747 12 6 5.7541 0.9336 3.2020 13 8 6.7644 -0.0779 3.2137 14 6 6.4544 -1.2238 2.4172 15 1 5.5125 -1.6576 2.7528 16 6 7.5720 -2.2597 2.5553 17 1 7.3821 -3.0918 1.8773 18 6 8.9134 -1.6124 2.2050 19 7 7.6131 -2.7529 3.9342 20 6 8.1265 -3.9936 4.2025 21 1 8.5015 -4.6085 3.3977 22 6 8.1649 -4.4612 5.5090 23 7 7.7074 -3.7121 6.4897 24 14 8.8660 -6.1535 5.8752 25 1 10.2824 -6.2089 5.4324 26 1 8.7937 -6.4139 7.3353 27 1 8.0797 -7.1827 5.1487 28 6 6.3284 -0.7993 0.9496 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 0.2867 2.4660 0.0078 33 1 1.7663 4.5137 -0.0044 34 1 6.4922 2.0090 1.4809 35 1 4.7314 2.1357 1.7281 36 1 6.0465 1.7478 3.8652 37 1 4.8091 0.5093 3.5413 38 1 9.7094 -2.3504 2.3030 39 1 8.8829 -1.2454 1.1791 40 1 9.1034 -0.7804 2.8831 41 1 7.2728 -2.2022 4.6565 42 1 7.7346 -4.0387 7.4027 43 1 7.3024 -0.4873 0.5727 44 1 5.9556 -1.6344 0.3565 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485650266.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:04 Heat of formation + Delta-G solvation = -74.677712 kcal Electronic energy + Delta-G solvation = -27974.333954 eV Core-core repulsion = 24019.220108 eV Total energy + Delta-G solvation = -3955.113845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.74952 -40.77012 -39.47873 -37.13222 -36.99311 -35.76722 -34.35872 -32.21452 -31.22892 -29.99283 -28.80906 -27.71777 -26.48054 -25.66390 -24.90176 -23.76504 -21.79488 -21.12656 -20.53779 -19.45624 -19.15129 -18.13209 -17.78915 -17.40904 -16.97397 -16.91247 -16.50649 -16.35605 -16.10747 -15.87065 -15.67128 -15.18950 -14.98329 -14.77886 -14.45010 -14.33037 -14.11734 -13.94406 -13.59379 -13.44004 -13.14031 -12.97578 -12.80173 -12.59279 -12.44628 -12.40851 -12.22057 -12.05776 -12.03118 -11.80577 -11.64579 -11.58958 -11.25456 -11.03186 -10.92242 -9.87437 -9.57424 -9.05913 -9.00519 -7.91376 -5.20333 -0.45218 0.28118 0.81775 1.34255 1.47313 1.50938 1.56668 1.65892 2.03577 2.51536 2.57386 2.75763 3.41570 3.50877 3.60101 3.81059 3.90472 3.94360 4.04411 4.09240 4.14789 4.26798 4.28141 4.34294 4.36580 4.46558 4.58244 4.60846 4.61839 4.67473 4.76994 4.79723 4.87347 4.94029 5.09333 5.10490 5.23248 5.29219 5.51789 5.62675 6.15002 6.21113 6.27033 6.30123 6.97736 7.36097 8.11179 8.36858 9.32036 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.018267 B = 0.002748 C = 0.002612 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.485463 B =10186.478106 C =10716.028758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.326 6.326 3 C 0.170 3.830 4 C -0.219 4.219 5 C -0.185 4.185 6 S 0.284 5.716 7 C -0.378 4.378 8 C 0.598 3.402 9 O -0.576 6.576 10 N -0.611 5.611 11 C 0.066 3.934 12 C 0.042 3.958 13 O -0.377 6.377 14 C 0.092 3.908 15 H 0.035 0.965 16 C 0.177 3.823 17 H 0.057 0.943 18 C -0.147 4.147 19 N -0.732 5.732 20 C -0.241 4.241 21 H 0.076 0.924 22 C -0.077 4.077 23 N -0.969 5.969 24 Si 0.974 3.026 25 H -0.277 1.277 26 H -0.295 1.295 27 H -0.279 1.279 28 C 0.095 3.905 29 H 0.075 0.925 30 H 0.108 0.892 31 H 0.075 0.925 32 H 0.177 0.823 33 H 0.216 0.784 34 H 0.103 0.897 35 H 0.115 0.885 36 H 0.136 0.864 37 H 0.041 0.959 38 H 0.038 0.962 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.375 0.625 42 H 0.250 0.750 43 H 0.097 0.903 44 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.749 22.379 -14.835 30.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.239 6.239 3 C 0.110 3.890 4 C -0.251 4.251 5 C -0.322 4.322 6 S 0.549 5.451 7 C -0.497 4.497 8 C 0.389 3.611 9 O -0.458 6.458 10 N -0.345 5.345 11 C -0.057 4.057 12 C -0.036 4.036 13 O -0.296 6.296 14 C 0.033 3.967 15 H 0.053 0.947 16 C 0.068 3.932 17 H 0.075 0.925 18 C -0.207 4.207 19 N -0.373 5.373 20 C -0.373 4.373 21 H 0.094 0.906 22 C -0.269 4.269 23 N -0.620 5.620 24 Si 0.802 3.198 25 H -0.203 1.203 26 H -0.222 1.222 27 H -0.205 1.205 28 C -0.028 4.028 29 H 0.094 0.906 30 H 0.126 0.874 31 H 0.094 0.906 32 H 0.194 0.806 33 H 0.233 0.767 34 H 0.121 0.879 35 H 0.132 0.868 36 H 0.154 0.846 37 H 0.060 0.940 38 H 0.057 0.943 39 H 0.089 0.911 40 H 0.067 0.933 41 H 0.207 0.793 42 H 0.059 0.941 43 H 0.115 0.885 44 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.160 22.377 -15.191 30.078 hybrid contribution -1.665 -1.919 0.680 2.630 sum -14.824 20.458 -14.511 29.135 Atomic orbital electron populations 1.23452 0.75537 1.05576 1.03091 1.86171 1.24131 1.26026 1.87532 1.18653 0.90076 0.86441 0.93859 1.20198 1.03530 0.89539 1.11802 1.25661 0.98664 1.05202 1.02706 1.82938 1.03933 0.90541 1.67664 1.22577 0.95403 1.00850 1.30884 1.16066 0.80062 0.85147 0.79858 1.90797 1.75281 1.38985 1.40717 1.48177 1.28031 1.20653 1.37623 1.22971 1.04973 0.88161 0.89576 1.23171 0.91853 0.92090 0.96440 1.88045 1.43893 1.28448 1.69188 1.22543 0.97612 0.86873 0.89719 0.94711 1.20416 0.93072 0.92725 0.86996 0.92544 1.22200 0.97673 1.00228 1.00560 1.42511 1.74061 1.17312 1.03389 1.19620 1.31598 0.93459 0.92636 0.90581 1.25563 1.03286 1.02313 0.95700 1.69837 1.54051 1.38886 0.99227 0.85214 0.78449 0.79851 0.76253 1.20314 1.22151 1.20532 1.22246 0.93868 0.90259 0.96469 0.90617 0.87362 0.90644 0.80613 0.76743 0.87905 0.86786 0.84640 0.94050 0.94302 0.91137 0.93261 0.79258 0.94102 0.88456 0.89765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.25 9.94 113.37 1.13 1.38 16 2 O -0.33 -8.59 10.24 -91.16 -0.93 -9.53 16 3 C 0.17 3.92 6.70 21.99 0.15 4.07 16 4 C -0.22 -2.90 9.17 21.17 0.19 -2.70 16 5 C -0.18 -1.65 10.90 66.77 0.73 -0.93 16 6 S 0.28 3.79 20.05 -56.49 -1.13 2.66 16 7 C -0.38 -9.46 5.18 22.90 0.12 -9.34 16 8 C 0.60 19.56 7.20 85.10 0.61 20.17 16 9 O -0.58 -23.82 16.43 -4.59 -0.08 -23.89 16 10 N -0.61 -17.91 3.02 -827.78 -2.50 -20.41 16 11 C 0.07 1.41 5.98 86.35 0.52 1.93 16 12 C 0.04 1.06 6.98 72.08 0.50 1.57 16 13 O -0.38 -13.28 9.24 -148.98 -1.38 -14.66 16 14 C 0.09 3.43 2.61 30.69 0.08 3.51 16 15 H 0.03 1.47 8.14 -2.38 -0.02 1.46 16 16 C 0.18 7.49 2.77 45.00 0.12 7.62 16 17 H 0.06 2.40 8.08 -2.39 -0.02 2.39 16 18 C -0.15 -5.50 9.06 71.98 0.65 -4.84 16 19 N -0.73 -39.17 5.10 -322.92 -1.65 -40.82 16 20 C -0.24 -13.94 9.93 84.03 0.83 -13.11 16 21 H 0.08 4.20 7.83 -2.91 -0.02 4.17 16 22 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 23 N -0.97 -61.30 13.06 21.65 0.28 -61.01 16 24 Si 0.97 47.58 29.55 68.60 2.03 49.60 16 25 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 26 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 27 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 28 C 0.09 3.05 5.81 86.35 0.50 3.55 16 29 H 0.08 0.75 7.89 -2.39 -0.02 0.73 16 30 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 0.75 7.87 -2.38 -0.02 0.74 16 32 H 0.18 1.28 6.99 -2.91 -0.02 1.26 16 33 H 0.22 0.14 8.06 -2.91 -0.02 0.12 16 34 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.11 1.93 4.41 -12.86 -0.06 1.88 16 36 H 0.14 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.07 2.12 6.42 -2.38 -0.02 2.10 16 40 H 0.05 1.92 7.55 -2.39 -0.02 1.90 16 41 H 0.38 21.80 7.59 -92.71 -0.70 21.10 16 42 H 0.25 15.32 8.31 -92.71 -0.77 14.55 16 43 H 0.10 2.79 6.27 -2.38 -0.01 2.77 16 44 H 0.08 2.99 7.11 -2.39 -0.02 2.97 16 Total: -1.00 -82.88 369.00 1.54 -81.35 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.28 Total: 27.92 kcal Atomic # 6 Polarization: 2.19 SS G_CDS: 6.61 Total: 8.79 kcal Atomic # 7 Polarization: -118.38 SS G_CDS: -3.86 Total: -122.25 kcal Atomic # 8 Polarization: -45.69 SS G_CDS: -2.39 Total: -48.08 kcal Atomic # 14 Polarization: 47.58 SS G_CDS: 2.03 Total: 49.60 kcal Atomic # 16 Polarization: 3.79 SS G_CDS: -1.13 Total: 2.66 kcal Total: -82.88 1.54 -81.35 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485650266.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.670 kcal (2) G-P(sol) polarization free energy of solvation -82.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds