Wall clock time and date at job start Wed Apr 1 2020 00:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46926 * 2 1 4 4 C 1.52995 * 109.47263 * 239.99588 * 2 1 3 5 5 C 1.52998 * 109.47357 * 175.00114 * 4 2 1 6 6 C 1.52995 * 109.47357 * 179.97438 * 5 4 2 7 7 N 1.46503 * 109.47050 * 179.97438 * 6 5 4 8 8 C 1.36938 * 119.99909 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99927 * 0.02562 * 8 7 6 10 10 C 1.38816 * 119.99925 * 180.02562 * 8 7 6 11 11 N 1.31619 * 119.99995 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99871 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47380 * 59.99636 * 12 10 8 14 14 H 1.48498 * 109.46972 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46810 * 299.99633 * 12 10 8 16 16 N 1.46510 * 109.47050 * 119.99520 * 2 1 3 17 17 C 1.34775 * 119.99984 * 275.00188 * 16 2 1 18 18 O 1.21785 * 119.99786 * 0.02562 * 17 16 2 19 19 C 1.41711 * 119.99931 * 180.02562 * 17 16 2 20 20 S 1.75654 * 125.10295 * 0.02562 * 19 17 16 21 21 C 1.75559 * 91.21366 * 179.97438 * 20 19 17 22 22 C 1.34199 * 110.67627 * 359.97438 * 21 20 19 23 23 C 1.37150 * 125.10165 * 180.02562 * 19 17 16 24 24 O 1.37651 * 124.48700 * 0.25691 * 23 19 17 25 25 C 1.43379 * 114.50789 * 163.28400 * 24 23 19 26 26 C 1.53222 * 109.13312 * 46.52329 * 25 24 23 27 27 O 1.38244 * 124.13936 * 180.21393 * 22 21 20 28 28 H 1.08999 * 109.47243 * 60.00497 * 1 2 3 29 29 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47460 * 300.00286 * 1 2 3 31 31 H 1.09002 * 109.46931 * 294.99841 * 4 2 1 32 32 H 1.09003 * 109.47227 * 55.00020 * 4 2 1 33 33 H 1.09003 * 109.46969 * 300.00307 * 5 4 2 34 34 H 1.09003 * 109.47029 * 59.99784 * 5 4 2 35 35 H 1.08997 * 109.47242 * 299.99373 * 6 5 4 36 36 H 1.09003 * 109.47227 * 59.99906 * 6 5 4 37 37 H 0.97003 * 119.99973 * 0.02562 * 7 6 5 38 38 H 0.96993 * 119.99792 * 180.02562 * 11 10 8 39 39 H 0.96998 * 119.99443 * 95.00226 * 16 2 1 40 40 H 1.07999 * 124.65885 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.52880 * 166.41738 * 25 24 23 42 42 H 1.09000 * 109.53077 * 286.62501 * 25 24 23 43 43 H 1.08996 * 109.52476 * 57.63017 * 26 25 24 44 44 H 1.08997 * 109.52427 * 177.76178 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6134 -1.3136 6 6 4.0749 -1.3353 -2.5624 7 7 5.5349 -1.2313 -2.6244 8 6 6.2187 -1.8056 -3.6626 9 1 5.6817 -2.3346 -4.4359 10 6 7.6022 -1.7076 -3.7210 11 7 8.2566 -1.0623 -2.7788 12 14 8.5349 -2.4902 -5.1377 13 1 8.0786 -1.8954 -6.4195 14 1 9.9896 -2.2443 -4.9685 15 1 8.2780 -3.9528 -5.1514 16 7 2.0183 -0.6906 1.1963 17 6 2.1470 -0.0181 2.3572 18 8 1.8569 1.1634 2.4119 19 6 2.6199 -0.6859 3.5142 20 16 3.0760 -2.3807 3.5868 21 6 3.4819 -2.2371 5.2887 22 6 3.2721 -0.9844 5.7219 23 6 2.7901 -0.1060 4.7453 24 8 2.5183 1.2131 5.0298 25 6 2.4067 1.5091 6.4283 26 6 3.5781 0.8614 7.1738 27 8 3.5051 -0.5622 7.0175 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7517 -1.7716 -1.2054 32 1 1.6054 -0.2619 -2.1369 33 1 3.8532 0.4369 -1.3573 34 1 3.9994 -1.0728 -0.4258 35 1 3.7867 -2.3855 -2.5182 36 1 3.6403 -0.8762 -3.4504 37 1 6.0172 -0.7558 -1.9300 38 1 9.2232 -0.9935 -2.8199 39 1 2.2490 -1.6317 1.1527 40 1 3.8507 -3.0456 5.9025 41 1 2.4335 2.5888 6.5754 42 1 1.4667 1.1116 6.8110 43 1 4.5188 1.2262 6.7613 44 1 3.5215 1.1156 8.2322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485744054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:41 Heat of formation + Delta-G solvation = -67.532145 kcal Electronic energy + Delta-G solvation = -26850.195063 eV Core-core repulsion = 22895.391072 eV Total energy + Delta-G solvation = -3954.803990 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.37948 -39.82822 -37.38880 -36.78609 -35.83018 -34.76970 -32.63423 -31.40590 -30.19940 -29.80010 -29.17375 -25.73719 -25.13915 -24.10716 -22.99423 -21.70210 -20.79341 -20.64800 -19.58674 -19.35263 -17.58760 -17.30037 -16.97366 -16.72903 -16.16095 -15.56774 -15.16760 -15.06754 -14.81647 -14.68934 -14.59937 -14.34049 -13.82392 -13.74360 -13.48023 -13.44211 -13.04930 -12.95292 -12.62666 -12.14209 -12.05659 -11.66550 -11.45328 -11.35503 -11.26263 -11.12840 -11.09468 -10.81562 -10.76627 -10.44049 -10.36313 -10.01284 -9.96434 -9.64688 -9.13630 -8.84269 -8.81610 -8.30124 -6.87483 -5.72082 -3.00738 0.10973 1.02795 1.26082 1.86372 2.86581 3.04865 3.16102 3.20588 3.46484 3.50401 3.51890 3.75664 4.15860 4.44758 4.48877 4.59892 4.76491 4.86343 4.96333 4.98128 5.08354 5.12188 5.17270 5.20540 5.47259 5.59246 5.61298 5.61652 5.67982 5.83808 6.01244 6.11910 6.16402 6.25542 6.27303 6.40618 6.45668 6.52200 6.70722 6.91441 6.94696 7.44380 7.72824 8.18159 8.47015 9.57561 10.17136 10.51508 11.50876 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.002512 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.655167 B =11145.228084 C =12327.321105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.143 3.857 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.127 4.127 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.239 4.239 9 H 0.069 0.931 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.720 5.720 17 C 0.593 3.407 18 O -0.520 6.520 19 C -0.280 4.280 20 S 0.220 5.780 21 C -0.209 4.209 22 C 0.031 3.969 23 C 0.128 3.872 24 O -0.259 6.259 25 C 0.012 3.988 26 C 0.017 3.983 27 O -0.291 6.291 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.067 0.933 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.017 0.983 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.396 0.604 40 H 0.183 0.817 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.080 0.920 44 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.530 0.300 21.879 27.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.039 3.961 3 H 0.109 0.891 4 C -0.162 4.162 5 C -0.164 4.164 6 C 0.026 3.974 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.087 0.913 10 C -0.211 4.211 11 N -0.583 5.583 12 Si 0.738 3.262 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.372 5.372 17 C 0.380 3.620 18 O -0.398 6.398 19 C -0.400 4.400 20 S 0.484 5.516 21 C -0.346 4.346 22 C -0.025 4.025 23 C 0.067 3.933 24 O -0.172 6.172 25 C -0.064 4.064 26 C -0.059 4.059 27 O -0.207 6.207 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.230 0.770 40 H 0.200 0.800 41 H 0.144 0.856 42 H 0.097 0.903 43 H 0.098 0.902 44 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -16.670 -0.058 20.724 26.596 hybrid contribution 0.964 0.501 0.719 1.303 sum -15.706 0.443 21.443 26.583 Atomic orbital electron populations 1.22174 0.95378 1.02015 1.02459 1.21056 0.93640 0.97854 0.83517 0.89096 1.21859 0.96928 1.00777 0.96586 1.21742 0.93634 1.01537 0.99535 1.20645 0.86178 0.96422 0.94191 1.42383 1.00223 1.66211 1.29044 1.19200 0.89438 1.27133 1.01295 0.91278 1.24753 0.96456 1.01271 0.98644 1.69655 1.07238 1.46959 1.34434 0.86260 0.78977 0.78956 0.81960 1.21293 1.21694 1.21287 1.45979 1.67893 1.13668 1.09706 1.15493 0.78159 0.86465 0.81873 1.90878 1.49822 1.14570 1.84507 1.22595 1.20110 0.99507 0.97812 1.84228 1.62513 1.02526 1.02381 1.24972 1.10015 0.99817 0.99814 1.18223 1.04815 0.93522 0.85943 1.18881 0.96796 0.85418 0.92232 1.87202 1.85814 1.19728 1.24443 1.23736 0.98855 1.03356 0.80430 1.23652 0.99254 0.79566 1.03459 1.87064 1.89032 1.23090 1.21520 0.91460 0.92521 0.92278 0.91407 0.90125 0.91881 0.92081 0.96559 0.96504 0.78315 0.93492 0.76985 0.80004 0.85579 0.90298 0.90194 0.85723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 9.48 37.16 0.35 -1.35 16 2 C 0.14 1.77 2.57 -67.93 -0.17 1.59 16 3 H 0.09 1.30 7.58 -51.93 -0.39 0.91 16 4 C -0.12 -1.51 4.75 -26.73 -0.13 -1.64 16 5 C -0.13 -2.07 5.21 -26.73 -0.14 -2.21 16 6 C 0.15 3.13 6.26 -4.04 -0.03 3.10 16 7 N -0.73 -19.28 5.60 -59.91 -0.34 -19.61 16 8 C -0.24 -6.88 9.99 -15.06 -0.15 -7.03 16 9 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 11 N -0.93 -28.92 13.06 55.49 0.72 -28.19 16 12 Si 0.91 22.76 29.55 -169.99 -5.02 17.73 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 15 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 16 N -0.72 -9.02 4.52 -56.67 -0.26 -9.28 16 17 C 0.59 8.77 7.56 -14.93 -0.11 8.66 16 18 O -0.52 -9.40 15.52 -11.90 -0.18 -9.59 16 19 C -0.28 -3.65 6.25 -38.65 -0.24 -3.89 16 20 S 0.22 2.10 22.17 -107.50 -2.38 -0.28 16 21 C -0.21 -1.94 11.17 29.31 0.33 -1.61 16 22 C 0.03 0.35 6.55 -40.38 -0.26 0.08 16 23 C 0.13 1.66 6.58 -39.35 -0.26 1.40 16 24 O -0.26 -3.39 9.60 -49.13 -0.47 -3.86 16 25 C 0.01 0.10 7.14 37.27 0.27 0.36 16 26 C 0.02 0.12 7.14 37.27 0.27 0.38 16 27 O -0.29 -2.88 10.77 -35.41 -0.38 -3.27 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.08 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 34 H 0.06 1.02 7.75 -51.93 -0.40 0.62 16 35 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.38 10.62 7.67 -40.82 -0.31 10.30 16 38 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 39 H 0.40 4.26 7.54 -40.82 -0.31 3.96 16 40 H 0.18 1.21 8.06 -52.49 -0.42 0.79 16 41 H 0.13 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 LS Contribution 380.69 15.07 5.74 5.74 Total: -1.00 -36.33 380.69 -9.41 -45.74 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -6.46 Total: 7.58 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -0.38 Total: -2.71 kcal Atomic # 7 Polarization: -57.22 SS G_CDS: 0.13 Total: -57.09 kcal Atomic # 8 Polarization: -15.68 SS G_CDS: -1.04 Total: -16.71 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.73 kcal Atomic # 16 Polarization: 2.10 SS G_CDS: -2.38 Total: -0.28 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -36.33 -9.41 -45.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485744054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.789 kcal (2) G-P(sol) polarization free energy of solvation -36.332 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds