Wall clock time and date at job start Wed Apr 1 2020 00:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.46926 * 2 1 4 4 C 1.52995 * 109.47263 * 239.99588 * 2 1 3 5 5 C 1.52998 * 109.47357 * 175.00114 * 4 2 1 6 6 C 1.52995 * 109.47357 * 179.97438 * 5 4 2 7 7 N 1.46503 * 109.47050 * 179.97438 * 6 5 4 8 8 C 1.36938 * 119.99909 * 180.02562 * 7 6 5 9 9 H 1.07999 * 119.99927 * 0.02562 * 8 7 6 10 10 C 1.38816 * 119.99925 * 180.02562 * 8 7 6 11 11 N 1.31619 * 119.99995 * 359.97438 * 10 8 7 12 12 Si 1.86801 * 119.99871 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47380 * 59.99636 * 12 10 8 14 14 H 1.48498 * 109.46972 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.46810 * 299.99633 * 12 10 8 16 16 N 1.46510 * 109.47050 * 119.99520 * 2 1 3 17 17 C 1.34775 * 119.99984 * 275.00188 * 16 2 1 18 18 O 1.21785 * 119.99786 * 0.02562 * 17 16 2 19 19 C 1.41711 * 119.99931 * 180.02562 * 17 16 2 20 20 S 1.75654 * 125.10295 * 0.02562 * 19 17 16 21 21 C 1.75559 * 91.21366 * 179.97438 * 20 19 17 22 22 C 1.34199 * 110.67627 * 359.97438 * 21 20 19 23 23 C 1.37150 * 125.10165 * 180.02562 * 19 17 16 24 24 O 1.37651 * 124.48700 * 0.25691 * 23 19 17 25 25 C 1.43379 * 114.50789 * 163.28400 * 24 23 19 26 26 C 1.53222 * 109.13312 * 46.52329 * 25 24 23 27 27 O 1.38244 * 124.13936 * 180.21393 * 22 21 20 28 28 H 1.08999 * 109.47243 * 60.00497 * 1 2 3 29 29 H 1.09000 * 109.47245 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47460 * 300.00286 * 1 2 3 31 31 H 1.09002 * 109.46931 * 294.99841 * 4 2 1 32 32 H 1.09003 * 109.47227 * 55.00020 * 4 2 1 33 33 H 1.09003 * 109.46969 * 300.00307 * 5 4 2 34 34 H 1.09003 * 109.47029 * 59.99784 * 5 4 2 35 35 H 1.08997 * 109.47242 * 299.99373 * 6 5 4 36 36 H 1.09003 * 109.47227 * 59.99906 * 6 5 4 37 37 H 0.97003 * 119.99973 * 0.02562 * 7 6 5 38 38 H 0.96993 * 119.99792 * 180.02562 * 11 10 8 39 39 H 0.96998 * 119.99443 * 95.00226 * 16 2 1 40 40 H 1.07999 * 124.65885 * 180.02562 * 21 20 19 41 41 H 1.08999 * 109.52880 * 166.41738 * 25 24 23 42 42 H 1.09000 * 109.53077 * 286.62501 * 25 24 23 43 43 H 1.08996 * 109.52476 * 57.63017 * 26 25 24 44 44 H 1.08997 * 109.52427 * 177.76178 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 3.5648 -0.6134 -1.3136 6 6 4.0749 -1.3353 -2.5624 7 7 5.5349 -1.2313 -2.6244 8 6 6.2187 -1.8056 -3.6626 9 1 5.6817 -2.3346 -4.4359 10 6 7.6022 -1.7076 -3.7210 11 7 8.2566 -1.0623 -2.7788 12 14 8.5349 -2.4902 -5.1377 13 1 8.0786 -1.8954 -6.4195 14 1 9.9896 -2.2443 -4.9685 15 1 8.2780 -3.9528 -5.1514 16 7 2.0183 -0.6906 1.1963 17 6 2.1470 -0.0181 2.3572 18 8 1.8569 1.1634 2.4119 19 6 2.6199 -0.6859 3.5142 20 16 3.0760 -2.3807 3.5868 21 6 3.4819 -2.2371 5.2887 22 6 3.2721 -0.9844 5.7219 23 6 2.7901 -0.1060 4.7453 24 8 2.5183 1.2131 5.0298 25 6 2.4067 1.5091 6.4283 26 6 3.5781 0.8614 7.1738 27 8 3.5051 -0.5622 7.0175 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7517 -1.7716 -1.2054 32 1 1.6054 -0.2619 -2.1369 33 1 3.8532 0.4369 -1.3573 34 1 3.9994 -1.0728 -0.4258 35 1 3.7867 -2.3855 -2.5182 36 1 3.6403 -0.8762 -3.4504 37 1 6.0172 -0.7558 -1.9300 38 1 9.2232 -0.9935 -2.8199 39 1 2.2490 -1.6317 1.1527 40 1 3.8507 -3.0456 5.9025 41 1 2.4335 2.5888 6.5754 42 1 1.4667 1.1116 6.8110 43 1 4.5188 1.2262 6.7613 44 1 3.5215 1.1156 8.2322 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485744054.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:40 Heat of formation + Delta-G solvation = -93.193012 kcal Electronic energy + Delta-G solvation = -26851.307801 eV Core-core repulsion = 22895.391072 eV Total energy + Delta-G solvation = -3955.916729 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.15703 -40.87931 -38.22867 -37.91796 -36.76559 -36.40185 -34.22409 -32.84713 -31.19853 -30.81795 -30.24557 -27.24336 -26.13981 -24.81528 -24.69044 -22.77769 -22.25985 -21.71042 -20.36340 -20.22096 -19.11157 -18.39157 -18.15725 -17.56602 -17.07832 -16.67509 -16.41955 -16.09120 -15.86468 -15.77669 -15.62824 -15.40899 -15.32406 -15.19726 -14.74045 -14.46415 -14.16121 -13.94485 -13.65254 -13.41624 -13.17417 -13.00703 -12.72945 -12.45379 -12.39372 -12.28050 -12.13202 -12.09378 -12.03482 -11.85096 -11.82443 -11.72017 -11.50092 -11.11799 -10.91290 -10.20753 -9.67765 -9.07233 -8.99837 -7.94437 -5.24062 -0.76137 0.23899 0.47044 1.03047 1.47385 1.51228 1.57371 2.03512 2.14051 2.20988 2.45107 2.56840 3.05715 3.38950 3.51426 3.62432 3.89772 3.92661 3.97402 4.05787 4.10788 4.22320 4.29346 4.37674 4.41127 4.50208 4.57079 4.59132 4.67207 4.82191 4.83936 4.86540 4.91479 5.00674 5.12407 5.31348 5.36024 5.43192 5.50921 5.53943 5.58591 5.95237 6.27676 6.43105 7.12807 7.33048 8.10368 8.32601 9.29270 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012538 B = 0.002512 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2232.655167 B =11145.228084 C =12327.321105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.144 3.856 3 H 0.065 0.935 4 C -0.109 4.109 5 C -0.115 4.115 6 C 0.151 3.849 7 N -0.751 5.751 8 C -0.247 4.247 9 H 0.078 0.922 10 C -0.079 4.079 11 N -0.972 5.972 12 Si 0.977 3.023 13 H -0.278 1.278 14 H -0.296 1.296 15 H -0.274 1.274 16 N -0.712 5.712 17 C 0.589 3.411 18 O -0.566 6.566 19 C -0.322 4.322 20 S 0.263 5.737 21 C -0.194 4.194 22 C 0.013 3.987 23 C 0.120 3.880 24 O -0.294 6.294 25 C 0.004 3.996 26 C 0.015 3.985 27 O -0.300 6.300 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.041 0.959 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.028 0.972 36 H 0.021 0.979 37 H 0.371 0.629 38 H 0.251 0.749 39 H 0.405 0.595 40 H 0.212 0.788 41 H 0.150 0.850 42 H 0.086 0.914 43 H 0.075 0.925 44 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.367 -1.519 22.046 28.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.040 3.960 3 H 0.083 0.917 4 C -0.147 4.147 5 C -0.153 4.153 6 C 0.025 3.975 7 N -0.394 5.394 8 C -0.379 4.379 9 H 0.096 0.904 10 C -0.271 4.271 11 N -0.623 5.623 12 Si 0.805 3.195 13 H -0.204 1.204 14 H -0.222 1.222 15 H -0.200 1.200 16 N -0.365 5.365 17 C 0.378 3.622 18 O -0.447 6.447 19 C -0.442 4.442 20 S 0.526 5.474 21 C -0.331 4.331 22 C -0.043 4.043 23 C 0.057 3.943 24 O -0.207 6.207 25 C -0.071 4.071 26 C -0.060 4.060 27 O -0.216 6.216 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.060 0.940 31 H 0.108 0.892 32 H 0.114 0.886 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.046 0.954 36 H 0.039 0.961 37 H 0.202 0.798 38 H 0.060 0.940 39 H 0.241 0.759 40 H 0.229 0.771 41 H 0.168 0.832 42 H 0.104 0.896 43 H 0.093 0.907 44 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -17.557 -1.916 20.869 27.340 hybrid contribution 1.185 1.074 0.733 1.760 sum -16.372 -0.842 21.602 27.118 Atomic orbital electron populations 1.22095 0.93516 1.03158 1.02394 1.21032 0.95014 0.96547 0.83411 0.91660 1.21769 0.93568 1.02342 0.97058 1.21608 0.96534 0.99735 0.97400 1.20850 0.83150 0.97465 0.96048 1.42665 1.02575 1.65918 1.28217 1.19651 0.90026 1.26452 1.01793 0.90417 1.25641 0.97543 1.02454 1.01473 1.69829 1.07092 1.48829 1.36561 0.85164 0.76996 0.78453 0.78873 1.20358 1.22197 1.20039 1.45941 1.67267 1.14017 1.09254 1.15785 0.77555 0.86068 0.82753 1.90835 1.52087 1.16469 1.85335 1.22670 1.22253 1.01802 0.97484 1.83957 1.61391 0.99584 1.02425 1.25431 1.07845 0.99963 0.99904 1.18301 1.05934 0.93817 0.86286 1.19234 0.96529 0.85727 0.92787 1.87140 1.85798 1.20223 1.27569 1.24085 0.99663 1.05047 0.78284 1.23901 0.98491 0.78099 1.05506 1.87043 1.89079 1.24697 1.20735 0.89887 0.90701 0.94001 0.89156 0.88610 0.93640 0.92663 0.95416 0.96103 0.79767 0.94015 0.75878 0.77081 0.83229 0.89608 0.90691 0.81934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.04 9.48 71.98 0.68 -2.36 16 2 C 0.14 3.49 2.57 44.99 0.12 3.60 16 3 H 0.07 1.94 7.58 -2.39 -0.02 1.92 16 4 C -0.11 -2.49 4.75 30.59 0.15 -2.34 16 5 C -0.11 -3.70 5.21 30.59 0.16 -3.54 16 6 C 0.15 6.01 6.26 86.38 0.54 6.55 16 7 N -0.75 -39.54 5.60 -343.45 -1.92 -41.46 16 8 C -0.25 -14.13 9.99 84.03 0.84 -13.29 16 9 H 0.08 4.21 7.83 -2.91 -0.02 4.18 16 10 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 11 N -0.97 -61.05 13.06 21.65 0.28 -60.76 16 12 Si 0.98 46.63 29.55 68.60 2.03 48.65 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 14 H -0.30 -14.22 7.11 99.48 0.71 -13.51 16 15 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 16 N -0.71 -17.84 4.52 -451.37 -2.04 -19.88 16 17 C 0.59 18.15 7.56 85.10 0.64 18.79 16 18 O -0.57 -21.74 15.52 11.65 0.18 -21.56 16 19 C -0.32 -8.60 6.25 22.87 0.14 -8.45 16 20 S 0.26 4.71 22.17 -56.49 -1.25 3.46 16 21 C -0.19 -3.27 11.17 66.90 0.75 -2.52 16 22 C 0.01 0.27 6.55 21.75 0.14 0.41 16 23 C 0.12 3.18 6.58 22.42 0.15 3.33 16 24 O -0.29 -8.05 9.60 -90.49 -0.87 -8.91 16 25 C 0.00 0.06 7.14 72.06 0.51 0.58 16 26 C 0.02 0.19 7.14 72.06 0.51 0.71 16 27 O -0.30 -5.59 10.77 -113.02 -1.22 -6.81 16 28 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 32 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.05 1.83 7.75 -2.39 -0.02 1.82 16 35 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.37 21.00 7.67 -92.71 -0.71 20.29 16 38 H 0.25 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.41 8.37 7.54 -92.71 -0.70 7.67 16 40 H 0.21 2.17 8.06 -2.91 -0.02 2.15 16 41 H 0.15 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.16 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -80.58 380.69 0.62 -79.96 By element: Atomic # 1 Polarization: 30.41 SS G_CDS: -0.38 Total: 30.03 kcal Atomic # 6 Polarization: -8.53 SS G_CDS: 5.80 Total: -2.72 kcal Atomic # 7 Polarization: -118.43 SS G_CDS: -3.68 Total: -122.11 kcal Atomic # 8 Polarization: -35.38 SS G_CDS: -1.90 Total: -37.28 kcal Atomic # 14 Polarization: 46.63 SS G_CDS: 2.03 Total: 48.65 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.25 Total: 3.46 kcal Total: -80.58 0.62 -79.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485744054.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.232 kcal (2) G-P(sol) polarization free energy of solvation -80.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds