Wall clock time and date at job start Wed Apr 1 2020 00:11:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35935 * 116.99996 * 2 1 4 4 C 1.38401 * 119.98967 * 359.97438 * 3 2 1 5 5 C 1.39553 * 119.80767 * 179.72332 * 4 3 2 6 6 C 1.47788 * 120.11017 * 180.29584 * 5 4 3 7 7 O 1.21564 * 120.00308 * 0.27555 * 6 5 4 8 8 N 1.34781 * 120.00296 * 180.28171 * 6 5 4 9 9 C 1.46496 * 120.00228 * 179.97438 * 8 6 5 10 10 H 1.09007 * 109.47120 * 34.99806 * 9 8 6 11 11 C 1.52993 * 109.47187 * 274.99774 * 9 8 6 12 12 C 1.53000 * 109.47160 * 154.99465 * 9 8 6 13 13 C 1.53002 * 109.47306 * 295.00161 * 12 9 8 14 14 C 1.53000 * 109.47306 * 180.02562 * 13 12 9 15 15 N 1.46497 * 109.47027 * 179.97438 * 14 13 12 16 16 C 1.36947 * 119.99803 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99657 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99881 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99959 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99967 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47227 * 59.99437 * 20 18 16 22 22 H 1.48497 * 109.47516 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47216 * 299.99676 * 20 18 16 24 24 C 1.39627 * 119.78251 * 0.57646 * 5 4 3 25 25 C 1.37927 * 119.97335 * 359.41648 * 24 5 4 26 26 C 1.38410 * 120.19415 * 0.30845 * 25 24 5 27 27 Cl 1.73602 * 119.89388 * 179.97438 * 26 25 24 28 28 H 1.09000 * 109.47606 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47443 * 300.00620 * 1 2 3 30 30 H 1.09009 * 109.46940 * 60.00179 * 1 2 3 31 31 H 1.07998 * 120.09777 * 359.97438 * 4 3 2 32 32 H 0.97005 * 119.99570 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47544 * 59.99925 * 11 9 8 34 34 H 1.09001 * 109.47447 * 180.02562 * 11 9 8 35 35 H 1.09007 * 109.47117 * 300.00033 * 11 9 8 36 36 H 1.09000 * 109.47307 * 55.00045 * 12 9 8 37 37 H 1.09001 * 109.47475 * 175.00295 * 12 9 8 38 38 H 1.09000 * 109.46843 * 300.00168 * 13 12 9 39 39 H 1.09001 * 109.47268 * 59.99659 * 13 12 9 40 40 H 1.09005 * 109.46992 * 300.00238 * 14 13 12 41 41 H 1.09001 * 109.47236 * 59.99639 * 14 13 12 42 42 H 0.97001 * 120.00344 * 0.02562 * 15 14 13 43 43 H 0.97001 * 119.99928 * 180.02562 * 19 18 16 44 44 H 1.08002 * 120.01546 * 179.70324 * 24 5 4 45 45 H 1.07998 * 119.90143 * 180.27741 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2921 2.3718 -0.0005 5 6 1.9296 3.6132 0.0053 6 6 1.1310 4.8567 0.0114 7 8 -0.0833 4.7993 0.0163 8 7 1.7489 6.0545 0.0113 9 6 0.9573 7.2872 0.0167 10 1 0.0549 7.1368 0.6094 11 6 0.5704 7.6511 -1.4180 12 6 1.7840 8.4216 0.6255 13 6 2.0652 8.1145 2.0978 14 6 2.8914 9.2492 2.7066 15 7 3.1600 8.9555 4.1165 16 6 3.8884 9.8350 4.8724 17 1 4.2651 10.7449 4.4290 18 6 4.1434 9.5564 6.2082 19 7 3.6847 8.4473 6.7483 20 14 5.1364 10.7564 7.2394 21 1 4.4453 12.0704 7.2724 22 1 5.2663 10.2311 8.6223 23 1 6.4864 10.9220 6.6435 24 6 3.3244 3.6766 -0.0005 25 6 4.0671 2.5143 0.0001 26 6 3.4338 1.2836 0.0001 27 17 4.3761 -0.1744 0.0003 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 0.2135 2.3169 -0.0014 32 1 2.7179 6.1003 0.0076 33 1 -0.0186 6.8430 -1.8517 34 1 -0.0182 8.5685 -1.4141 35 1 1.4728 7.8015 -2.0107 36 1 2.7273 8.5132 0.0869 37 1 1.2296 9.3569 0.5489 38 1 1.1220 8.0229 2.6363 39 1 2.6196 7.1792 2.1744 40 1 3.8346 9.3413 2.1681 41 1 2.3365 10.1843 2.6300 42 1 2.8226 8.1378 4.5144 43 1 3.8626 8.2528 7.6818 44 1 3.8217 4.6353 -0.0009 45 1 5.1459 2.5647 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485744883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:01 Heat of formation + Delta-G solvation = -55.561660 kcal Electronic energy + Delta-G solvation = -26378.976930 eV Core-core repulsion = 22422.648312 eV Total energy + Delta-G solvation = -3956.328617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.90033 -39.75867 -37.76861 -36.90362 -36.54234 -34.88343 -32.79034 -31.75556 -31.03568 -30.32773 -29.36867 -27.70214 -25.72941 -24.46978 -23.01216 -22.69160 -21.35626 -20.82380 -20.64277 -18.98249 -17.14368 -17.03103 -16.76701 -16.66132 -16.23797 -16.15630 -15.13628 -14.73745 -14.69992 -14.49515 -14.23641 -14.06871 -13.84355 -13.62045 -13.44882 -13.03516 -12.90404 -12.74905 -12.27722 -12.24875 -12.12499 -11.87235 -11.83208 -11.48822 -11.33214 -11.20149 -11.14977 -10.85180 -10.81993 -10.50626 -10.43387 -10.13255 -10.03215 -9.68834 -9.36843 -9.18929 -8.86159 -8.65042 -6.91511 -5.75590 -3.04547 0.29259 0.86695 1.78878 2.50653 2.74097 2.94170 3.41363 3.44132 3.48259 3.49691 4.28200 4.33299 4.54927 4.57288 4.60809 4.73301 4.80573 4.82602 4.94258 4.99234 5.10556 5.16200 5.25434 5.38496 5.49416 5.52257 5.57528 5.58999 5.66807 5.75073 5.79268 5.92366 6.02634 6.06442 6.08522 6.17626 6.33765 6.39170 6.39741 6.78527 6.85085 6.88420 7.31278 7.69479 8.00156 8.43443 9.54075 10.13013 10.47183 11.47279 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.002382 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.652833 B =11751.754848 C =13504.047805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.304 6.304 3 C 0.130 3.870 4 C -0.140 4.140 5 C -0.088 4.088 6 C 0.560 3.440 7 O -0.536 6.536 8 N -0.712 5.712 9 C 0.141 3.859 10 H 0.091 0.909 11 C -0.162 4.162 12 C -0.123 4.123 13 C -0.126 4.126 14 C 0.153 3.847 15 N -0.735 5.735 16 C -0.241 4.241 17 H 0.069 0.931 18 C -0.015 4.015 19 N -0.934 5.934 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.110 4.110 25 C -0.077 4.077 26 C -0.048 4.048 27 Cl -0.051 7.051 28 H 0.105 0.895 29 H 0.061 0.939 30 H 0.059 0.941 31 H 0.151 0.849 32 H 0.401 0.599 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.068 0.932 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.061 0.939 40 H 0.016 0.984 41 H 0.017 0.983 42 H 0.383 0.617 43 H 0.256 0.744 44 H 0.140 0.860 45 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.183 -15.300 -20.800 26.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.217 6.217 3 C 0.083 3.917 4 C -0.160 4.160 5 C -0.091 4.091 6 C 0.346 3.654 7 O -0.414 6.414 8 N -0.364 5.364 9 C 0.037 3.963 10 H 0.109 0.891 11 C -0.221 4.221 12 C -0.162 4.162 13 C -0.164 4.164 14 C 0.025 3.975 15 N -0.379 5.379 16 C -0.372 4.372 17 H 0.087 0.913 18 C -0.211 4.211 19 N -0.582 5.582 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.129 4.129 25 C -0.096 4.096 26 C -0.076 4.076 27 Cl -0.022 7.022 28 H 0.123 0.877 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.169 0.831 32 H 0.237 0.763 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.099 0.901 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.034 0.966 41 H 0.035 0.965 42 H 0.217 0.783 43 H 0.065 0.935 44 H 0.158 0.842 45 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -4.810 -15.494 -20.732 26.325 hybrid contribution 0.818 0.416 0.844 1.247 sum -3.991 -15.078 -19.888 25.274 Atomic orbital electron populations 1.23190 0.77531 1.04483 1.02015 1.86168 1.21956 1.25283 1.88263 1.18531 0.90423 0.85275 0.97447 1.21292 1.01232 0.90095 1.03402 1.19859 0.93594 0.93409 1.02266 1.18106 0.87415 0.83409 0.76437 1.90772 1.13544 1.87316 1.49740 1.46022 1.10609 1.05411 1.74351 1.21107 0.95342 0.83062 0.96817 0.89098 1.22175 1.01682 1.01952 0.96249 1.21863 1.00126 0.97558 0.96619 1.21744 1.00928 0.99826 0.93935 1.20643 0.95517 0.94734 0.86558 1.42376 1.64775 1.25252 1.05460 1.19194 1.25414 1.00636 0.91956 0.91274 1.24755 1.01494 0.97745 0.97074 1.69654 1.50425 1.25097 1.13072 0.86260 0.79961 0.80336 0.79583 1.21270 1.21664 1.21267 1.21221 0.92408 0.98815 1.00430 1.20887 1.01058 0.89336 0.98313 1.20421 0.88851 0.89215 1.09102 1.98382 1.71592 1.35435 1.96814 0.87701 0.92016 0.92199 0.83146 0.76278 0.92297 0.91379 0.92437 0.91341 0.90090 0.91902 0.92065 0.96581 0.96506 0.78329 0.93453 0.84233 0.83393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.81 101.05 0.99 1.14 16 2 O -0.30 -3.00 9.94 -19.54 -0.19 -3.19 16 3 C 0.13 1.36 6.67 -39.26 -0.26 1.10 16 4 C -0.14 -1.49 8.58 -39.03 -0.33 -1.83 16 5 C -0.09 -0.95 5.87 -104.98 -0.62 -1.57 16 6 C 0.56 6.92 7.74 -12.35 -0.10 6.82 16 7 O -0.54 -8.26 16.01 5.31 0.08 -8.17 16 8 N -0.71 -7.45 4.48 -54.77 -0.25 -7.69 16 9 C 0.14 1.52 2.57 -67.94 -0.17 1.35 16 10 H 0.09 1.17 7.58 -51.92 -0.39 0.77 16 11 C -0.16 -1.50 9.48 37.15 0.35 -1.15 16 12 C -0.12 -1.37 4.75 -26.73 -0.13 -1.50 16 13 C -0.13 -1.93 5.22 -26.73 -0.14 -2.07 16 14 C 0.15 3.01 6.26 -4.04 -0.03 2.99 16 15 N -0.73 -18.85 5.60 -59.90 -0.34 -19.19 16 16 C -0.24 -6.82 9.99 -15.05 -0.15 -6.97 16 17 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 18 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 19 N -0.93 -28.59 13.06 55.49 0.72 -27.87 16 20 Si 0.91 22.53 29.55 -169.99 -5.02 17.50 16 21 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 24 C -0.11 -0.97 9.54 -39.18 -0.37 -1.34 16 25 C -0.08 -0.67 9.80 -39.63 -0.39 -1.06 16 26 C -0.05 -0.49 6.34 -39.25 -0.25 -0.74 16 27 Cl -0.05 -0.51 28.49 -51.86 -1.48 -1.98 16 28 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.06 0.34 7.66 -51.92 -0.40 -0.05 16 31 H 0.15 1.52 5.88 -52.49 -0.31 1.22 16 32 H 0.40 3.37 6.63 -40.82 -0.27 3.10 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.06 0.47 8.14 -51.92 -0.42 0.05 16 36 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 0.86 8.14 -51.93 -0.42 0.43 16 38 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 39 H 0.06 0.94 7.75 -51.93 -0.40 0.54 16 40 H 0.02 0.32 8.14 -51.93 -0.42 -0.11 16 41 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.38 10.38 7.67 -40.82 -0.31 10.07 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.14 0.91 6.40 -52.49 -0.34 0.58 16 45 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 391.28 15.07 5.90 5.90 Total: -1.00 -34.18 391.28 -8.85 -43.03 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: -6.59 Total: 7.03 kcal Atomic # 6 Polarization: -3.68 SS G_CDS: -1.69 Total: -5.37 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: 0.14 Total: -54.75 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: -0.11 Total: -11.36 kcal Atomic # 14 Polarization: 22.53 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.48 Total: -1.98 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.18 -8.85 -43.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485744883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.529 kcal (2) G-P(sol) polarization free energy of solvation -34.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.852 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds