Wall clock time and date at job start Wed Apr 1 2020 00:11:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35935 * 116.99996 * 2 1 4 4 C 1.38401 * 119.98967 * 359.97438 * 3 2 1 5 5 C 1.39553 * 119.80767 * 179.72332 * 4 3 2 6 6 C 1.47788 * 120.11017 * 180.29584 * 5 4 3 7 7 O 1.21564 * 120.00308 * 0.27555 * 6 5 4 8 8 N 1.34781 * 120.00296 * 180.28171 * 6 5 4 9 9 C 1.46496 * 120.00228 * 179.97438 * 8 6 5 10 10 H 1.09007 * 109.47120 * 34.99806 * 9 8 6 11 11 C 1.52993 * 109.47187 * 274.99774 * 9 8 6 12 12 C 1.53000 * 109.47160 * 154.99465 * 9 8 6 13 13 C 1.53002 * 109.47306 * 295.00161 * 12 9 8 14 14 C 1.53000 * 109.47306 * 180.02562 * 13 12 9 15 15 N 1.46497 * 109.47027 * 179.97438 * 14 13 12 16 16 C 1.36947 * 119.99803 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99657 * 359.97438 * 16 15 14 18 18 C 1.38812 * 119.99881 * 180.02562 * 16 15 14 19 19 N 1.31620 * 119.99959 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 119.99967 * 180.02562 * 18 16 15 21 21 H 1.48505 * 109.47227 * 59.99437 * 20 18 16 22 22 H 1.48497 * 109.47516 * 179.97438 * 20 18 16 23 23 H 1.48503 * 109.47216 * 299.99676 * 20 18 16 24 24 C 1.39627 * 119.78251 * 0.57646 * 5 4 3 25 25 C 1.37927 * 119.97335 * 359.41648 * 24 5 4 26 26 C 1.38410 * 120.19415 * 0.30845 * 25 24 5 27 27 Cl 1.73602 * 119.89388 * 179.97438 * 26 25 24 28 28 H 1.09000 * 109.47606 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47443 * 300.00620 * 1 2 3 30 30 H 1.09009 * 109.46940 * 60.00179 * 1 2 3 31 31 H 1.07998 * 120.09777 * 359.97438 * 4 3 2 32 32 H 0.97005 * 119.99570 * 359.97438 * 8 6 5 33 33 H 1.09000 * 109.47544 * 59.99925 * 11 9 8 34 34 H 1.09001 * 109.47447 * 180.02562 * 11 9 8 35 35 H 1.09007 * 109.47117 * 300.00033 * 11 9 8 36 36 H 1.09000 * 109.47307 * 55.00045 * 12 9 8 37 37 H 1.09001 * 109.47475 * 175.00295 * 12 9 8 38 38 H 1.09000 * 109.46843 * 300.00168 * 13 12 9 39 39 H 1.09001 * 109.47268 * 59.99659 * 13 12 9 40 40 H 1.09005 * 109.46992 * 300.00238 * 14 13 12 41 41 H 1.09001 * 109.47236 * 59.99639 * 14 13 12 42 42 H 0.97001 * 120.00344 * 0.02562 * 15 14 13 43 43 H 0.97001 * 119.99928 * 180.02562 * 19 18 16 44 44 H 1.08002 * 120.01546 * 179.70324 * 24 5 4 45 45 H 1.07998 * 119.90143 * 180.27741 * 25 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 1.2921 2.3718 -0.0005 5 6 1.9296 3.6132 0.0053 6 6 1.1310 4.8567 0.0114 7 8 -0.0833 4.7993 0.0163 8 7 1.7489 6.0545 0.0113 9 6 0.9573 7.2872 0.0167 10 1 0.0549 7.1368 0.6094 11 6 0.5704 7.6511 -1.4180 12 6 1.7840 8.4216 0.6255 13 6 2.0652 8.1145 2.0978 14 6 2.8914 9.2492 2.7066 15 7 3.1600 8.9555 4.1165 16 6 3.8884 9.8350 4.8724 17 1 4.2651 10.7449 4.4290 18 6 4.1434 9.5564 6.2082 19 7 3.6847 8.4473 6.7483 20 14 5.1364 10.7564 7.2394 21 1 4.4453 12.0704 7.2724 22 1 5.2663 10.2311 8.6223 23 1 6.4864 10.9220 6.6435 24 6 3.3244 3.6766 -0.0005 25 6 4.0671 2.5143 0.0001 26 6 3.4338 1.2836 0.0001 27 17 4.3761 -0.1744 0.0003 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 0.2135 2.3169 -0.0014 32 1 2.7179 6.1003 0.0076 33 1 -0.0186 6.8430 -1.8517 34 1 -0.0182 8.5685 -1.4141 35 1 1.4728 7.8015 -2.0107 36 1 2.7273 8.5132 0.0869 37 1 1.2296 9.3569 0.5489 38 1 1.1220 8.0229 2.6363 39 1 2.6196 7.1792 2.1744 40 1 3.8346 9.3413 2.1681 41 1 2.3365 10.1843 2.6300 42 1 2.8226 8.1378 4.5144 43 1 3.8626 8.2528 7.6818 44 1 3.8217 4.6353 -0.0009 45 1 5.1459 2.5647 0.0002 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485744883.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:00 Heat of formation + Delta-G solvation = -77.371945 kcal Electronic energy + Delta-G solvation = -26379.922695 eV Core-core repulsion = 22422.648312 eV Total energy + Delta-G solvation = -3957.274382 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.70301 -40.60802 -38.51918 -37.95283 -37.38295 -36.51984 -34.24489 -32.99464 -31.97024 -31.32433 -30.60534 -28.30862 -27.22307 -25.42518 -24.62497 -23.43413 -22.49448 -22.06553 -21.55410 -19.77636 -19.10566 -17.96052 -17.60234 -17.39890 -17.03455 -16.90404 -16.63167 -16.09613 -15.83481 -15.38617 -15.35457 -15.23541 -15.00206 -14.85811 -14.47247 -14.27437 -13.85561 -13.57701 -13.41696 -13.17705 -13.00485 -12.97002 -12.72982 -12.59921 -12.49163 -12.38188 -12.27435 -12.16486 -12.06640 -11.91103 -11.84587 -11.70604 -11.48948 -11.10487 -10.91052 -10.23045 -10.01773 -9.39422 -8.99387 -7.94757 -5.24008 -0.50940 0.14072 1.02887 1.47588 1.50914 1.57149 1.63887 2.01595 2.16734 2.56709 2.59963 3.38900 3.50921 3.57130 3.68437 3.84230 3.93206 4.00151 4.12488 4.20027 4.29642 4.30443 4.31374 4.41767 4.56914 4.60186 4.67205 4.69625 4.78035 4.84587 4.88532 4.92389 4.96439 5.01604 5.06171 5.14593 5.33144 5.35031 5.39696 5.44752 5.51776 5.55902 6.09374 6.27683 6.46069 7.11107 7.33243 8.11129 8.32555 9.28806 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010067 B = 0.002382 C = 0.002073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2780.652833 B =11751.754848 C =13504.047805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.317 6.317 3 C 0.122 3.878 4 C -0.149 4.149 5 C -0.102 4.102 6 C 0.557 3.443 7 O -0.575 6.575 8 N -0.703 5.703 9 C 0.143 3.857 10 H 0.066 0.934 11 C -0.155 4.155 12 C -0.109 4.109 13 C -0.114 4.114 14 C 0.150 3.850 15 N -0.751 5.751 16 C -0.247 4.247 17 H 0.077 0.923 18 C -0.079 4.079 19 N -0.972 5.972 20 Si 0.975 3.025 21 H -0.278 1.278 22 H -0.296 1.296 23 H -0.275 1.275 24 C -0.103 4.103 25 C -0.074 4.074 26 C -0.059 4.059 27 Cl -0.052 7.052 28 H 0.127 0.873 29 H 0.060 0.940 30 H 0.065 0.935 31 H 0.148 0.852 32 H 0.413 0.587 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.059 0.941 40 H 0.028 0.972 41 H 0.019 0.981 42 H 0.371 0.629 43 H 0.251 0.749 44 H 0.165 0.835 45 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.826 -14.249 -22.129 26.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.231 6.231 3 C 0.075 3.925 4 C -0.169 4.169 5 C -0.106 4.106 6 C 0.345 3.655 7 O -0.456 6.456 8 N -0.355 5.355 9 C 0.039 3.961 10 H 0.085 0.915 11 C -0.213 4.213 12 C -0.148 4.148 13 C -0.152 4.152 14 C 0.024 3.976 15 N -0.393 5.393 16 C -0.379 4.379 17 H 0.095 0.905 18 C -0.271 4.271 19 N -0.623 5.623 20 Si 0.804 3.196 21 H -0.204 1.204 22 H -0.223 1.223 23 H -0.201 1.201 24 C -0.122 4.122 25 C -0.092 4.092 26 C -0.087 4.087 27 Cl -0.023 7.023 28 H 0.145 0.855 29 H 0.078 0.922 30 H 0.084 0.916 31 H 0.165 0.835 32 H 0.251 0.749 33 H 0.062 0.938 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.063 0.937 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.037 0.963 42 H 0.203 0.797 43 H 0.060 0.940 44 H 0.183 0.817 45 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -3.430 -14.409 -22.113 26.615 hybrid contribution 0.368 0.076 1.203 1.260 sum -3.062 -14.333 -20.910 25.535 Atomic orbital electron populations 1.23413 0.76076 1.06051 1.02237 1.86148 1.23534 1.25149 1.88233 1.18641 0.90786 0.85405 0.97679 1.21322 1.01286 0.90396 1.03917 1.19863 0.94451 0.92673 1.03589 1.18365 0.87072 0.84256 0.75797 1.90748 1.15208 1.87862 1.51739 1.45973 1.11239 1.04872 1.73386 1.21041 0.94450 0.82989 0.97648 0.91534 1.22102 1.02434 1.01903 0.94857 1.21766 1.01473 0.97963 0.93560 1.21610 0.99141 0.98156 0.96326 1.20865 0.96598 0.96310 0.83866 1.42659 1.64500 1.24463 1.07726 1.19642 1.24727 1.01017 0.92483 0.90469 1.25618 1.03297 0.99645 0.98505 1.69822 1.52294 1.27122 1.13015 0.85189 0.78822 0.78235 0.77396 1.20381 1.22259 1.20077 1.21482 0.91506 1.00059 0.99134 1.21195 1.02275 0.88609 0.97155 1.20679 0.88913 0.89805 1.09309 1.98378 1.71439 1.35618 1.96822 0.85472 0.92167 0.91634 0.83459 0.74871 0.93758 0.90168 0.90668 0.89016 0.88954 0.93681 0.92249 0.95432 0.96313 0.79731 0.94032 0.81717 0.80974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.32 -6.27 9.94 -92.82 -0.92 -7.19 16 3 C 0.12 2.55 6.67 22.48 0.15 2.70 16 4 C -0.15 -3.23 8.58 22.63 0.19 -3.03 16 5 C -0.10 -2.17 5.87 -20.10 -0.12 -2.29 16 6 C 0.56 13.67 7.74 86.77 0.67 14.34 16 7 O -0.57 -18.21 16.01 -3.92 -0.06 -18.27 16 8 N -0.70 -13.72 4.48 -445.46 -2.00 -15.72 16 9 C 0.14 2.88 2.57 44.99 0.12 3.00 16 10 H 0.07 1.71 7.58 -2.38 -0.02 1.69 16 11 C -0.15 -2.55 9.48 71.98 0.68 -1.86 16 12 C -0.11 -2.15 4.75 30.59 0.15 -2.01 16 13 C -0.11 -3.36 5.22 30.59 0.16 -3.20 16 14 C 0.15 5.67 6.26 86.38 0.54 6.21 16 15 N -0.75 -38.35 5.60 -343.44 -1.92 -40.27 16 16 C -0.25 -13.84 9.99 84.03 0.84 -13.00 16 17 H 0.08 4.11 7.83 -2.91 -0.02 4.08 16 18 C -0.08 -4.55 5.50 84.86 0.47 -4.08 16 19 N -0.97 -60.17 13.06 21.65 0.28 -59.89 16 20 Si 0.98 46.05 29.55 68.60 2.03 48.08 16 21 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 22 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 23 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 24 C -0.10 -1.64 9.54 22.53 0.21 -1.42 16 25 C -0.07 -1.16 9.80 22.24 0.22 -0.94 16 26 C -0.06 -1.16 6.34 22.48 0.14 -1.02 16 27 Cl -0.05 -0.98 28.49 -2.72 -0.08 -1.05 16 28 H 0.13 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 0.79 7.66 -2.39 -0.02 0.77 16 30 H 0.07 0.76 7.66 -2.38 -0.02 0.75 16 31 H 0.15 3.16 5.88 -2.91 -0.02 3.14 16 32 H 0.41 5.92 6.63 -92.70 -0.61 5.31 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.76 7.75 -2.39 -0.02 1.74 16 40 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 41 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 42 H 0.37 20.39 7.67 -92.71 -0.71 19.68 16 43 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 44 H 0.17 1.67 6.40 -2.91 -0.02 1.65 16 45 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 Total: -1.00 -74.11 391.28 2.56 -71.55 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: -0.31 Total: 28.03 kcal Atomic # 6 Polarization: -10.81 SS G_CDS: 5.54 Total: -5.28 kcal Atomic # 7 Polarization: -112.24 SS G_CDS: -3.64 Total: -115.88 kcal Atomic # 8 Polarization: -24.47 SS G_CDS: -0.99 Total: -25.46 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -0.08 Total: -1.05 kcal Total: -74.11 2.56 -71.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485744883.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.819 kcal (2) G-P(sol) polarization free energy of solvation -74.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds