Wall clock time and date at job start Wed Apr 1 2020 00:11:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.46773 * 2 1 4 4 C 1.52995 * 109.47548 * 240.00082 * 2 1 3 5 5 C 1.53000 * 109.47400 * 174.99786 * 4 2 1 6 6 C 1.52995 * 109.47504 * 179.97438 * 5 4 2 7 7 N 1.46497 * 109.47485 * 180.02562 * 6 5 4 8 8 C 1.36938 * 120.00073 * 180.02562 * 7 6 5 9 9 H 1.07997 * 120.00061 * 359.97438 * 8 7 6 10 10 C 1.38811 * 119.99879 * 179.97438 * 8 7 6 11 11 N 1.31622 * 119.99984 * 359.97438 * 10 8 7 12 12 Si 1.86804 * 119.99883 * 180.02562 * 10 8 7 13 13 H 1.48499 * 109.47320 * 90.00243 * 12 10 8 14 14 H 1.48505 * 109.46713 * 210.00025 * 12 10 8 15 15 H 1.48500 * 109.46988 * 329.99849 * 12 10 8 16 16 N 1.46500 * 109.47146 * 119.99512 * 2 1 3 17 17 C 1.34779 * 120.00169 * 275.00181 * 16 2 1 18 18 O 1.21282 * 119.99922 * 0.02562 * 17 16 2 19 19 C 1.50699 * 120.00037 * 180.02562 * 17 16 2 20 20 O 1.42905 * 109.46972 * 180.02562 * 19 17 16 21 21 C 1.35928 * 116.99822 * 180.02562 * 20 19 17 22 22 C 1.38702 * 120.06000 * 359.97438 * 21 20 19 23 23 C 1.38147 * 119.95887 * 180.02562 * 22 21 20 24 24 C 1.38283 * 120.07386 * 359.97438 * 23 22 21 25 25 C 1.38241 * 120.12198 * 0.02788 * 24 23 22 26 26 C 1.38263 * 120.03790 * 359.67725 * 25 24 23 27 27 Cl 1.73597 * 120.03663 * 180.31988 * 26 25 24 28 28 H 1.08995 * 109.47133 * 300.00242 * 1 2 3 29 29 H 1.09001 * 109.46947 * 60.00474 * 1 2 3 30 30 H 1.09006 * 109.46479 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46952 * 294.99621 * 4 2 1 32 32 H 1.08996 * 109.47558 * 54.99452 * 4 2 1 33 33 H 1.09003 * 109.47195 * 300.00168 * 5 4 2 34 34 H 1.09005 * 109.47009 * 59.99561 * 5 4 2 35 35 H 1.09003 * 109.47343 * 300.00459 * 6 5 4 36 36 H 1.09005 * 109.47035 * 59.99959 * 6 5 4 37 37 H 0.97000 * 119.99611 * 359.97438 * 7 6 5 38 38 H 0.97003 * 119.99826 * 179.97438 * 11 10 8 39 39 H 0.96996 * 119.99986 * 95.00778 * 16 2 1 40 40 H 1.09000 * 109.47247 * 60.00371 * 19 17 16 41 41 H 1.09001 * 109.47358 * 299.99798 * 19 17 16 42 42 H 1.08007 * 120.01998 * 359.97438 * 22 21 20 43 43 H 1.08003 * 119.96479 * 179.97438 * 23 22 21 44 44 H 1.08000 * 119.94028 * 180.02562 * 24 23 22 45 45 H 1.08001 * 119.98383 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 3.5649 -0.6132 -1.3136 6 6 4.0751 -1.3349 -2.5624 7 7 5.5352 -1.2320 -2.6238 8 6 6.2190 -1.8063 -3.6620 9 1 5.6820 -2.3354 -4.4353 10 6 7.6024 -1.7083 -3.7204 11 7 8.2568 -1.0629 -2.7782 12 14 8.5352 -2.4911 -5.1369 13 1 8.6675 -1.5107 -6.2444 14 1 9.8857 -2.9002 -4.6742 15 1 7.7942 -3.6846 -5.6181 16 7 2.0184 -0.6905 1.1962 17 6 2.1471 -0.0181 2.3572 18 8 1.8581 1.1586 2.4117 19 6 2.6499 -0.7283 3.5875 20 8 2.6973 0.1899 4.6816 21 6 3.1327 -0.2940 5.8748 22 6 3.5061 -1.6248 5.9904 23 6 3.9478 -2.1145 7.2042 24 6 4.0187 -1.2793 8.3040 25 6 3.6473 0.0476 8.1925 26 6 3.2103 0.5443 6.9785 27 17 2.7519 2.2127 6.8365 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0278 0.0005 31 1 1.7518 -1.7716 -1.2055 32 1 1.6055 -0.2618 -2.1369 33 1 3.8533 0.4371 -1.3572 34 1 3.9996 -1.0726 -0.4258 35 1 3.7868 -2.3852 -2.5184 36 1 3.6405 -0.8758 -3.4504 37 1 6.0174 -0.7564 -1.9294 38 1 9.2236 -0.9948 -2.8188 39 1 2.2492 -1.6316 1.1527 40 1 3.6493 -1.1200 3.3980 41 1 1.9778 -1.5506 3.8327 42 1 3.4507 -2.2780 5.1320 43 1 4.2382 -3.1509 7.2944 44 1 4.3647 -1.6643 9.2519 45 1 3.7032 0.6979 9.0530 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485749861.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:18 Heat of formation + Delta-G solvation = -54.283579 kcal Electronic energy + Delta-G solvation = -25976.721240 eV Core-core repulsion = 22020.448044 eV Total energy + Delta-G solvation = -3956.273196 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.79475 -39.76300 -37.84853 -36.68934 -36.56905 -34.87036 -32.74106 -31.54619 -31.20479 -30.51874 -29.47729 -28.19087 -25.69102 -23.48701 -23.02083 -22.72222 -21.27133 -20.82168 -20.64066 -18.89360 -17.48228 -17.03036 -16.87246 -16.72545 -16.35062 -15.95224 -15.00148 -14.86234 -14.68042 -14.57321 -14.29768 -14.10023 -13.85146 -13.61662 -13.33577 -13.08838 -13.00362 -12.70218 -12.31606 -12.25258 -12.14056 -11.80772 -11.63396 -11.51673 -11.34092 -11.19939 -11.02900 -10.87251 -10.83691 -10.49428 -10.44491 -10.03621 -9.96665 -9.70415 -9.30856 -9.22536 -8.87945 -8.58957 -6.92884 -5.77156 -3.06080 0.72798 0.89899 1.92434 2.24142 2.39791 3.21049 3.34122 3.42621 3.47391 3.49326 4.24778 4.33235 4.49719 4.56253 4.57306 4.67539 4.74634 4.75198 4.84088 4.99466 5.02630 5.10391 5.28210 5.38111 5.51288 5.56202 5.58898 5.64363 5.74063 5.76941 5.90822 5.98306 6.02787 6.06487 6.16705 6.17786 6.32629 6.37639 6.38513 6.80383 6.83852 6.87277 7.29046 7.68702 8.01709 8.41877 9.52624 10.11492 10.45645 11.45778 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010898 B = 0.002093 C = 0.001875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2568.569442 B =13375.129561 C =14928.906921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.143 3.857 3 H 0.091 0.909 4 C -0.123 4.123 5 C -0.126 4.126 6 C 0.153 3.847 7 N -0.735 5.735 8 C -0.240 4.240 9 H 0.070 0.930 10 C -0.015 4.015 11 N -0.934 5.934 12 Si 0.907 3.093 13 H -0.290 1.290 14 H -0.291 1.291 15 H -0.282 1.282 16 N -0.717 5.717 17 C 0.517 3.483 18 O -0.514 6.514 19 C 0.037 3.963 20 O -0.276 6.276 21 C 0.140 3.860 22 C -0.200 4.200 23 C -0.074 4.074 24 C -0.148 4.148 25 C -0.073 4.073 26 C -0.068 4.068 27 Cl -0.052 7.052 28 H 0.058 0.942 29 H 0.067 0.933 30 H 0.056 0.944 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.062 0.938 34 H 0.060 0.940 35 H 0.016 0.984 36 H 0.017 0.983 37 H 0.383 0.617 38 H 0.255 0.745 39 H 0.402 0.598 40 H 0.098 0.902 41 H 0.094 0.906 42 H 0.138 0.862 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.719 -2.283 22.459 27.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.040 3.960 3 H 0.109 0.891 4 C -0.161 4.161 5 C -0.164 4.164 6 C 0.025 3.975 7 N -0.379 5.379 8 C -0.371 4.371 9 H 0.088 0.912 10 C -0.211 4.211 11 N -0.582 5.582 12 Si 0.738 3.262 13 H -0.217 1.217 14 H -0.217 1.217 15 H -0.208 1.208 16 N -0.371 5.371 17 C 0.301 3.699 18 O -0.388 6.388 19 C -0.042 4.042 20 O -0.188 6.188 21 C 0.093 3.907 22 C -0.219 4.219 23 C -0.092 4.092 24 C -0.166 4.166 25 C -0.092 4.092 26 C -0.096 4.096 27 Cl -0.023 7.023 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.099 0.901 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.217 0.783 38 H 0.065 0.935 39 H 0.236 0.764 40 H 0.116 0.884 41 H 0.112 0.888 42 H 0.156 0.844 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -16.003 -1.148 22.263 27.442 hybrid contribution 0.953 -0.894 -0.663 1.465 sum -15.050 -2.041 21.600 26.405 Atomic orbital electron populations 1.22181 0.95282 1.02063 1.02590 1.21084 0.93680 0.97877 0.83404 0.89134 1.21857 0.96924 1.00790 0.96527 1.21740 0.93585 1.01546 0.99522 1.20646 0.86211 0.96410 0.94217 1.42384 1.00190 1.66244 1.29066 1.19238 0.89443 1.27145 1.01308 0.91209 1.24762 0.96474 1.01241 0.98654 1.69666 1.07223 1.46979 1.34374 0.86183 0.79370 0.78809 0.81790 1.21692 1.21749 1.20772 1.45923 1.67688 1.14223 1.09264 1.19881 0.78511 0.87490 0.84006 1.90771 1.48220 1.15376 1.84482 1.22581 1.03399 0.92481 0.85704 1.86252 1.80236 1.36854 1.15458 1.18745 0.94877 0.91847 0.85235 1.21288 1.06481 0.93923 1.00213 1.21079 0.96126 1.00165 0.91840 1.21056 1.02958 0.93076 0.99534 1.20959 0.96847 0.96105 0.95289 1.20240 1.08776 0.86952 0.93603 1.98393 1.90921 1.14744 1.98227 0.92267 0.91371 0.92460 0.91332 0.90098 0.91882 0.92111 0.96580 0.96487 0.78340 0.93499 0.76355 0.88386 0.88803 0.84394 0.84943 0.84887 0.84266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.53 9.48 37.16 0.35 -1.18 16 2 C 0.14 1.55 2.57 -67.93 -0.17 1.37 16 3 H 0.09 1.19 7.58 -51.93 -0.39 0.80 16 4 C -0.12 -1.35 4.75 -26.73 -0.13 -1.48 16 5 C -0.13 -1.91 5.22 -26.73 -0.14 -2.05 16 6 C 0.15 2.99 6.26 -4.05 -0.03 2.97 16 7 N -0.73 -18.79 5.60 -59.91 -0.34 -19.13 16 8 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 9 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 10 C -0.02 -0.45 5.50 -17.43 -0.10 -0.54 16 11 N -0.93 -28.52 13.06 55.49 0.72 -27.80 16 12 Si 0.91 22.47 29.55 -169.99 -5.02 17.44 16 13 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 14 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 15 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 16 N -0.72 -7.05 4.53 -53.81 -0.24 -7.30 16 17 C 0.52 6.21 7.87 -10.99 -0.09 6.12 16 18 O -0.51 -8.55 16.16 -14.35 -0.23 -8.78 16 19 C 0.04 0.34 5.22 36.01 0.19 0.53 16 20 O -0.28 -3.40 9.13 -39.42 -0.36 -3.76 16 21 C 0.14 1.49 6.68 -39.20 -0.26 1.23 16 22 C -0.20 -1.59 9.04 -39.44 -0.36 -1.95 16 23 C -0.07 -0.49 10.04 -39.60 -0.40 -0.89 16 24 C -0.15 -0.98 10.04 -39.56 -0.40 -1.37 16 25 C -0.07 -0.59 9.83 -39.57 -0.39 -0.97 16 26 C -0.07 -0.72 6.33 -39.36 -0.25 -0.97 16 27 Cl -0.05 -0.60 28.50 -51.86 -1.48 -2.08 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.67 8.14 -51.92 -0.42 0.25 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.06 0.91 7.75 -51.93 -0.40 0.51 16 35 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.38 10.34 7.67 -40.82 -0.31 10.03 16 38 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 39 H 0.40 2.91 8.60 -40.82 -0.35 2.56 16 40 H 0.10 0.72 7.66 -51.93 -0.40 0.32 16 41 H 0.09 0.55 7.66 -51.93 -0.40 0.16 16 42 H 0.14 0.79 6.30 -52.48 -0.33 0.46 16 43 H 0.13 0.56 8.06 -52.48 -0.42 0.14 16 44 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 45 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 395.37 15.07 5.96 5.96 Total: -1.00 -35.72 395.37 -10.08 -45.81 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -6.78 Total: 5.77 kcal Atomic # 6 Polarization: -3.82 SS G_CDS: -2.31 Total: -6.13 kcal Atomic # 7 Polarization: -54.37 SS G_CDS: 0.15 Total: -54.23 kcal Atomic # 8 Polarization: -11.95 SS G_CDS: -0.59 Total: -12.54 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -5.02 Total: 17.44 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -1.48 Total: -2.08 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.72 -10.08 -45.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485749861.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.478 kcal (2) G-P(sol) polarization free energy of solvation -35.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds