Wall clock time and date at job start Wed Apr 1 2020 00:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 C 1.52999 * 109.47338 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47580 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00516 * 180.02562 * 7 6 5 9 9 O 1.21610 * 119.99730 * 359.97438 * 8 7 6 10 10 C 1.47380 * 120.00377 * 180.02562 * 8 7 6 11 11 C 1.47023 * 127.19431 * 179.97438 * 10 8 7 12 12 C 1.34174 * 105.95522 * 179.97438 * 11 10 8 13 13 O 1.34216 * 109.12593 * 359.97438 * 12 11 10 14 14 C 1.33661 * 110.90275 * 359.72905 * 13 12 11 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47012 * 89.99727 * 24 22 20 26 26 H 1.48501 * 109.47302 * 209.99797 * 24 22 20 27 27 H 1.48501 * 109.46788 * 330.00118 * 24 22 20 28 28 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 29 29 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 30 30 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 32 32 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 33 33 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 34 34 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 35 35 H 1.09003 * 109.47199 * 300.00414 * 6 5 4 36 36 H 1.09002 * 109.47200 * 60.00255 * 6 5 4 37 37 H 0.97009 * 120.00152 * 359.97438 * 7 6 5 38 38 H 1.08004 * 127.01948 * 359.97438 * 11 10 8 39 39 H 1.08000 * 125.44020 * 180.02562 * 12 11 10 40 40 H 1.08004 * 125.79292 * 180.28416 * 14 13 12 41 41 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 42 42 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 43 43 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 44 44 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0748 -1.3347 -2.5629 7 7 5.5349 -1.2318 -2.6244 8 6 6.2079 -1.7968 -3.6462 9 8 5.6032 -2.3926 -4.5170 10 6 7.6768 -1.6938 -3.7077 11 6 8.5640 -2.2464 -4.7417 12 6 9.8099 -1.9034 -4.3805 13 8 9.7589 -1.2020 -3.2373 14 6 8.4967 -1.0595 -2.8212 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.2404 1.1182 7.7959 24 14 4.1282 -1.2762 8.8729 25 1 5.6125 -1.2380 8.8939 26 1 3.6027 -0.8253 10.1866 27 1 3.6725 -2.6643 8.6073 28 1 -0.3632 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4262 35 1 3.7865 -2.3849 -2.5190 36 1 3.6402 -0.8754 -3.4508 37 1 6.0173 -0.7562 -1.9300 38 1 8.2724 -2.8128 -5.6139 39 1 10.7100 -2.1512 -4.9234 40 1 8.1803 -0.5341 -1.9322 41 1 2.2492 -1.6319 1.1524 42 1 1.9698 -1.5528 3.8298 43 1 3.6437 -1.1227 3.4038 44 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001487473981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:34 Heat of formation + Delta-G solvation = -76.507058 kcal Electronic energy + Delta-G solvation = -25458.769267 eV Core-core repulsion = 21503.576095 eV Total energy + Delta-G solvation = -3955.193172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.96733 -39.82419 -39.41676 -36.85144 -35.21252 -33.39710 -32.49515 -32.43944 -31.04438 -30.05070 -28.53293 -26.58754 -25.50514 -23.86999 -22.24946 -21.84057 -21.45532 -20.38949 -20.31823 -18.82003 -17.86967 -16.67955 -16.60171 -16.54984 -16.41320 -15.93800 -15.68887 -15.18770 -14.96363 -14.82720 -14.56462 -14.02740 -13.88627 -13.72872 -13.37794 -13.31559 -13.17382 -12.85458 -12.74955 -12.59411 -12.35687 -11.96320 -11.86163 -11.43749 -11.22954 -11.08544 -11.04838 -10.92550 -10.77506 -10.38771 -10.26474 -9.83668 -9.50275 -9.39828 -9.24839 -9.09396 -8.91526 -8.26131 -6.52559 -6.24096 -3.94716 0.90461 1.64531 2.46775 2.75704 2.99976 3.01935 3.08065 3.20272 3.26313 3.30611 3.70589 4.12998 4.18225 4.21815 4.30405 4.56598 4.61261 4.73015 4.92746 5.06261 5.11090 5.11569 5.18552 5.21657 5.23904 5.35743 5.42218 5.44978 5.52945 5.58749 5.68387 5.74081 5.82566 5.85397 5.86063 6.02069 6.05245 6.11175 6.20322 6.48807 6.66851 7.08843 7.57157 7.70494 7.84032 8.32739 8.60695 9.21318 10.83257 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009584 B = 0.002056 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.732846 B =13613.851011 C =15984.119644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.143 3.857 3 H 0.088 0.912 4 C -0.122 4.122 5 C -0.134 4.134 6 C 0.121 3.879 7 N -0.727 5.727 8 C 0.587 3.413 9 O -0.537 6.537 10 C -0.239 4.239 11 C -0.166 4.166 12 C -0.040 4.040 13 O -0.173 6.173 14 C 0.024 3.976 15 N -0.734 5.734 16 C 0.532 3.468 17 O -0.518 6.518 18 C -0.154 4.154 19 S -0.060 6.060 20 C -0.536 4.536 21 H 0.072 0.928 22 C 0.073 3.927 23 N -0.867 5.867 24 Si 0.918 3.082 25 H -0.277 1.277 26 H -0.282 1.282 27 H -0.272 1.272 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.055 0.945 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.400 0.600 38 H 0.160 0.840 39 H 0.210 0.790 40 H 0.212 0.788 41 H 0.396 0.604 42 H 0.089 0.911 43 H 0.088 0.912 44 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.360 -6.412 -24.913 26.758 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.160 4.160 5 C -0.172 4.172 6 C -0.003 4.003 7 N -0.379 5.379 8 C 0.374 3.626 9 O -0.415 6.415 10 C -0.243 4.243 11 C -0.186 4.186 12 C -0.106 4.106 13 O -0.068 6.068 14 C -0.046 4.046 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.305 4.305 19 S 0.166 5.834 20 C -0.684 4.684 21 H 0.090 0.910 22 C -0.136 4.136 23 N -0.503 5.503 24 Si 0.745 3.255 25 H -0.203 1.203 26 H -0.207 1.207 27 H -0.197 1.197 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.234 0.766 38 H 0.177 0.823 39 H 0.226 0.774 40 H 0.229 0.771 41 H 0.230 0.770 42 H 0.107 0.893 43 H 0.106 0.894 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 6.664 -4.613 -25.182 26.455 hybrid contribution 0.908 -2.426 1.059 2.798 sum 7.572 -7.039 -24.123 26.245 Atomic orbital electron populations 1.22185 0.95369 1.02053 1.02677 1.20882 0.93997 0.97638 0.83671 0.89373 1.21793 0.94506 1.01681 0.98027 1.21836 0.96478 1.01524 0.97363 1.21424 0.78792 1.01307 0.98735 1.45871 1.08300 1.57149 1.26583 1.17271 0.85459 0.78406 0.81425 1.90793 1.69618 1.42437 1.38656 1.21546 0.94190 1.08687 0.99889 1.22795 0.91169 1.03836 1.00782 1.23995 0.99961 0.99017 0.87578 1.83821 1.29143 1.58250 1.35550 1.24518 0.80798 0.99828 0.99479 1.46129 1.69329 1.13821 1.09613 1.20294 0.76822 0.87233 0.83790 1.90700 1.48245 1.15832 1.84420 1.23539 1.03618 1.04851 0.98475 1.85392 1.86562 1.12858 0.98557 1.22864 1.51117 0.98151 0.96255 0.90965 1.24995 0.95089 0.95554 0.97970 1.70017 1.45500 1.13252 1.21496 0.86171 0.78979 0.80204 0.80167 1.20273 1.20740 1.19705 0.91645 0.91917 0.92581 0.90964 0.90072 0.90832 0.90689 0.91211 0.91228 0.76590 0.82273 0.77381 0.77133 0.76978 0.89303 0.89369 0.92177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.67 9.48 37.16 0.35 -1.32 16 2 C 0.14 1.46 2.57 -67.93 -0.17 1.28 16 3 H 0.09 1.08 7.58 -51.93 -0.39 0.68 16 4 C -0.12 -0.83 4.75 -26.73 -0.13 -0.95 16 5 C -0.13 -0.90 5.22 -26.74 -0.14 -1.03 16 6 C 0.12 0.90 5.67 -4.04 -0.02 0.87 16 7 N -0.73 -5.52 5.55 -61.40 -0.34 -5.87 16 8 C 0.59 6.12 7.81 -12.54 -0.10 6.02 16 9 O -0.54 -7.65 16.98 5.27 0.09 -7.56 16 10 C -0.24 -2.08 6.31 -103.28 -0.65 -2.73 16 11 C -0.17 -1.32 11.01 -37.45 -0.41 -1.73 16 12 C -0.04 -0.23 12.03 29.30 0.35 0.12 16 13 O -0.17 -1.22 10.52 7.63 0.08 -1.14 16 14 C 0.02 0.15 11.61 30.07 0.35 0.50 16 15 N -0.73 -8.74 4.53 -53.80 -0.24 -8.99 16 16 C 0.53 9.31 7.81 -10.98 -0.09 9.22 16 17 O -0.52 -11.20 15.53 5.55 0.09 -11.12 16 18 C -0.15 -2.98 6.16 36.01 0.22 -2.76 16 19 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 20 C -0.54 -15.02 9.50 30.94 0.29 -14.73 16 21 H 0.07 1.92 7.80 -52.48 -0.41 1.51 16 22 C 0.07 2.06 5.49 -17.43 -0.10 1.97 16 23 N -0.87 -25.86 13.22 55.49 0.73 -25.13 16 24 Si 0.92 21.14 29.55 -169.99 -5.02 16.12 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.53 7.75 -51.92 -0.40 0.13 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.40 2.03 7.44 -40.82 -0.30 1.72 16 38 H 0.16 1.16 8.06 -52.48 -0.42 0.74 16 39 H 0.21 0.42 8.06 -52.49 -0.42 0.00 16 40 H 0.21 0.55 7.47 -52.48 -0.39 0.16 16 41 H 0.40 3.66 8.60 -40.82 -0.35 3.31 16 42 H 0.09 1.61 8.14 -51.91 -0.42 1.18 16 43 H 0.09 1.56 8.14 -51.92 -0.42 1.13 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 395.72 15.07 5.96 5.96 Total: -1.00 -38.04 395.72 -7.57 -45.60 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -6.46 Total: 1.19 kcal Atomic # 6 Polarization: -5.03 SS G_CDS: -0.24 Total: -5.27 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 0.15 Total: -39.98 kcal Atomic # 8 Polarization: -20.08 SS G_CDS: 0.26 Total: -19.82 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -38.04 -7.57 -45.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487473981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.904 kcal (2) G-P(sol) polarization free energy of solvation -38.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds