Wall clock time and date at job start Wed Apr 1 2020 00:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 C 1.52999 * 109.47338 * 179.97438 * 5 4 2 7 7 N 1.46496 * 109.47580 * 180.02562 * 6 5 4 8 8 C 1.34775 * 120.00516 * 180.02562 * 7 6 5 9 9 O 1.21610 * 119.99730 * 359.97438 * 8 7 6 10 10 C 1.47380 * 120.00377 * 180.02562 * 8 7 6 11 11 C 1.47023 * 127.19431 * 179.97438 * 10 8 7 12 12 C 1.34174 * 105.95522 * 179.97438 * 11 10 8 13 13 O 1.34216 * 109.12593 * 359.97438 * 12 11 10 14 14 C 1.33661 * 110.90275 * 359.72905 * 13 12 11 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31633 * 119.99674 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 120.00584 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47012 * 89.99727 * 24 22 20 26 26 H 1.48501 * 109.47302 * 209.99797 * 24 22 20 27 27 H 1.48501 * 109.46788 * 330.00118 * 24 22 20 28 28 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 29 29 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 30 30 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 32 32 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 33 33 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 34 34 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 35 35 H 1.09003 * 109.47199 * 300.00414 * 6 5 4 36 36 H 1.09002 * 109.47200 * 60.00255 * 6 5 4 37 37 H 0.97009 * 120.00152 * 359.97438 * 7 6 5 38 38 H 1.08004 * 127.01948 * 359.97438 * 11 10 8 39 39 H 1.08000 * 125.44020 * 180.02562 * 12 11 10 40 40 H 1.08004 * 125.79292 * 180.28416 * 14 13 12 41 41 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 42 42 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 43 43 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 44 44 H 0.97003 * 120.00297 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 6 4.0748 -1.3347 -2.5629 7 7 5.5349 -1.2318 -2.6244 8 6 6.2079 -1.7968 -3.6462 9 8 5.6032 -2.3926 -4.5170 10 6 7.6768 -1.6938 -3.7077 11 6 8.5640 -2.2464 -4.7417 12 6 9.8099 -1.9034 -4.3805 13 8 9.7589 -1.2020 -3.2373 14 6 8.4967 -1.0595 -2.8212 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.2404 1.1182 7.7959 24 14 4.1282 -1.2762 8.8729 25 1 5.6125 -1.2380 8.8939 26 1 3.6027 -0.8253 10.1866 27 1 3.6725 -2.6643 8.6073 28 1 -0.3632 0.5137 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4262 35 1 3.7865 -2.3849 -2.5190 36 1 3.6402 -0.8754 -3.4508 37 1 6.0173 -0.7562 -1.9300 38 1 8.2724 -2.8128 -5.6139 39 1 10.7100 -2.1512 -4.9234 40 1 8.1803 -0.5341 -1.9322 41 1 2.2492 -1.6319 1.1524 42 1 1.9698 -1.5528 3.8298 43 1 3.6437 -1.1227 3.4038 44 1 3.3802 1.4615 8.6923 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001487473981.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:34 Heat of formation + Delta-G solvation = -104.639065 kcal Electronic energy + Delta-G solvation = -25459.989162 eV Core-core repulsion = 21503.576095 eV Total energy + Delta-G solvation = -3956.413067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.48384 -40.80153 -40.46780 -37.78938 -36.09392 -34.57424 -34.04896 -33.39612 -31.96393 -30.65274 -29.86357 -27.64536 -27.26281 -24.53717 -22.95075 -22.42309 -22.27546 -21.52906 -21.00810 -19.81428 -19.36230 -17.90476 -17.45176 -17.21702 -17.15082 -16.86988 -16.69954 -16.52942 -16.35560 -15.90290 -15.71012 -15.19582 -14.78849 -14.72395 -14.46953 -14.42975 -14.07480 -13.86014 -13.56690 -13.35086 -13.32975 -13.15656 -13.09384 -12.88374 -12.60545 -12.50217 -12.29488 -11.89226 -11.70369 -11.63939 -11.21362 -11.13343 -10.88240 -10.85709 -10.25128 -10.18862 -10.05025 -9.74515 -8.64659 -8.33759 -6.11178 0.33717 1.11615 1.29048 1.42774 1.48716 1.59023 1.68105 1.99150 2.17902 2.27633 2.29305 2.36961 3.00358 3.34423 3.61457 3.63251 3.76285 3.99239 4.02597 4.04399 4.12783 4.30812 4.33429 4.43886 4.52129 4.54351 4.56652 4.69270 4.73719 4.75543 4.86940 4.91574 5.01247 5.07492 5.22178 5.26540 5.31244 5.36895 5.41811 5.42897 5.63015 5.98234 6.20741 6.47027 6.59002 7.07795 7.14018 7.32986 8.75247 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009584 B = 0.002056 C = 0.001751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2920.732846 B =13613.851011 C =15984.119644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.142 3.858 3 H 0.067 0.933 4 C -0.111 4.111 5 C -0.125 4.125 6 C 0.124 3.876 7 N -0.715 5.715 8 C 0.583 3.417 9 O -0.587 6.587 10 C -0.273 4.273 11 C -0.199 4.199 12 C -0.025 4.025 13 O -0.180 6.180 14 C 0.043 3.957 15 N -0.707 5.707 16 C 0.536 3.464 17 O -0.566 6.566 18 C -0.131 4.131 19 S -0.151 6.151 20 C -0.545 4.545 21 H 0.082 0.918 22 C 0.013 3.987 23 N -0.911 5.911 24 Si 0.997 3.003 25 H -0.267 1.267 26 H -0.279 1.279 27 H -0.259 1.259 28 H 0.029 0.971 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.097 0.903 33 H 0.072 0.928 34 H 0.075 0.925 35 H 0.066 0.934 36 H 0.065 0.935 37 H 0.413 0.587 38 H 0.155 0.845 39 H 0.245 0.755 40 H 0.246 0.754 41 H 0.414 0.586 42 H 0.106 0.894 43 H 0.110 0.890 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.542 -8.256 -25.349 27.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.038 3.962 3 H 0.086 0.914 4 C -0.150 4.150 5 C -0.163 4.163 6 C 0.000 4.000 7 N -0.367 5.367 8 C 0.373 3.627 9 O -0.468 6.468 10 C -0.277 4.277 11 C -0.218 4.218 12 C -0.090 4.090 13 O -0.074 6.074 14 C -0.028 4.028 15 N -0.361 5.361 16 C 0.321 3.679 17 O -0.445 6.445 18 C -0.282 4.282 19 S 0.076 5.924 20 C -0.693 4.693 21 H 0.100 0.900 22 C -0.192 4.192 23 N -0.547 5.547 24 Si 0.819 3.181 25 H -0.192 1.192 26 H -0.204 1.204 27 H -0.183 1.183 28 H 0.048 0.952 29 H 0.102 0.898 30 H 0.090 0.910 31 H 0.108 0.892 32 H 0.116 0.884 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.084 0.916 36 H 0.083 0.917 37 H 0.250 0.750 38 H 0.172 0.828 39 H 0.261 0.739 40 H 0.262 0.738 41 H 0.251 0.749 42 H 0.124 0.876 43 H 0.129 0.871 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 7.854 -6.484 -25.635 27.584 hybrid contribution 0.526 -1.857 1.063 2.204 sum 8.380 -8.341 -24.572 27.269 Atomic orbital electron populations 1.22159 0.95047 1.02820 1.01986 1.21036 0.94219 0.97002 0.83973 0.91435 1.21734 0.94393 1.02342 0.96488 1.21747 0.96398 1.01323 0.96848 1.21390 0.78631 1.01104 0.98841 1.45802 1.08511 1.56241 1.26121 1.17575 0.86216 0.77782 0.81175 1.90756 1.70649 1.44870 1.40566 1.21605 0.93649 1.10914 1.01578 1.22971 0.92236 1.05306 1.01321 1.24618 1.00442 0.97194 0.86778 1.83858 1.29362 1.58266 1.35912 1.25094 0.80098 0.98171 0.99414 1.45895 1.67335 1.14466 1.08416 1.19997 0.76679 0.86547 0.84651 1.90692 1.50705 1.17872 1.85193 1.23390 1.05550 1.03096 0.96167 1.85572 1.86948 1.17283 1.02621 1.23200 1.50901 0.98467 0.96734 0.89974 1.26115 0.95119 0.97195 1.00773 1.70183 1.46878 1.15489 1.22196 0.84971 0.78550 0.78203 0.76372 1.19238 1.20433 1.18277 0.95170 0.89831 0.91035 0.89241 0.88414 0.90936 0.90650 0.91596 0.91709 0.75012 0.82760 0.73862 0.73811 0.74870 0.87603 0.87148 0.92041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.03 9.48 71.98 0.68 -2.35 16 2 C 0.14 2.63 2.57 44.99 0.12 2.75 16 3 H 0.07 1.60 7.58 -2.38 -0.02 1.58 16 4 C -0.11 -1.18 4.75 30.59 0.15 -1.03 16 5 C -0.13 -1.37 5.22 30.59 0.16 -1.21 16 6 C 0.12 1.63 5.67 86.38 0.49 2.12 16 7 N -0.72 -9.93 5.55 -466.42 -2.59 -12.52 16 8 C 0.58 12.08 7.81 86.65 0.68 12.75 16 9 O -0.59 -17.20 16.98 -4.06 -0.07 -17.27 16 10 C -0.27 -4.61 6.31 -18.99 -0.12 -4.73 16 11 C -0.20 -3.11 11.01 23.65 0.26 -2.85 16 12 C -0.02 -0.25 12.03 66.89 0.80 0.55 16 13 O -0.18 -2.14 10.52 4.39 0.05 -2.09 16 14 C 0.04 0.46 11.61 67.39 0.78 1.24 16 15 N -0.71 -15.36 4.53 -442.52 -2.00 -17.37 16 16 C 0.54 18.34 7.81 87.66 0.68 19.03 16 17 O -0.57 -25.02 15.53 -3.04 -0.05 -25.07 16 18 C -0.13 -4.92 6.16 71.24 0.44 -4.48 16 19 S -0.15 -8.21 20.57 -56.49 -1.16 -9.37 16 20 C -0.55 -30.56 9.50 67.95 0.65 -29.92 16 21 H 0.08 4.27 7.80 -2.91 -0.02 4.24 16 22 C 0.01 0.71 5.49 84.86 0.47 1.18 16 23 N -0.91 -55.34 13.22 21.65 0.29 -55.06 16 24 Si 1.00 42.94 29.55 68.60 2.03 44.97 16 25 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 26 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 27 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 28 H 0.03 0.78 8.14 -2.39 -0.02 0.76 16 29 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 30 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 34 H 0.07 0.84 7.75 -2.38 -0.02 0.82 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.41 3.33 7.44 -92.70 -0.69 2.64 16 38 H 0.15 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.25 0.33 8.06 -2.91 -0.02 0.31 16 40 H 0.25 0.53 7.47 -2.91 -0.02 0.51 16 41 H 0.41 6.25 8.60 -92.71 -0.80 5.45 16 42 H 0.11 3.63 8.14 -2.39 -0.02 3.61 16 43 H 0.11 3.66 8.14 -2.40 -0.02 3.64 16 44 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 Total: -1.00 -87.17 395.72 2.26 -84.91 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: -0.46 Total: 15.82 kcal Atomic # 6 Polarization: -13.18 SS G_CDS: 6.23 Total: -6.95 kcal Atomic # 7 Polarization: -80.64 SS G_CDS: -4.31 Total: -84.94 kcal Atomic # 8 Polarization: -44.36 SS G_CDS: -0.07 Total: -44.43 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Atomic # 16 Polarization: -8.21 SS G_CDS: -1.16 Total: -9.37 kcal Total: -87.17 2.26 -84.91 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001487473981.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.732 kcal (2) G-P(sol) polarization free energy of solvation -87.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds