Wall clock time and date at job start Wed Apr 1 2020 00:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09002 * 109.46661 * 2 1 4 4 C 1.52992 * 109.47705 * 240.00190 * 2 1 3 5 5 C 1.52997 * 109.47482 * 174.99884 * 4 2 1 6 6 N 1.46505 * 109.47212 * 179.97438 * 5 4 2 7 7 C 1.34771 * 119.99622 * 179.97438 * 6 5 4 8 8 O 1.21280 * 120.00597 * 0.02562 * 7 6 5 9 9 C 1.50701 * 119.99622 * 179.97438 * 7 6 5 10 10 S 1.81002 * 109.47156 * 180.02562 * 9 7 6 11 11 C 1.76204 * 100.00151 * 180.02562 * 10 9 7 12 12 H 1.08000 * 119.99845 * 359.97438 * 11 10 9 13 13 C 1.38796 * 120.00054 * 180.02562 * 11 10 9 14 14 N 1.31631 * 120.00100 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 119.99948 * 179.97438 * 13 11 10 16 16 H 1.48502 * 109.47203 * 90.00024 * 15 13 11 17 17 H 1.48506 * 109.46989 * 210.00023 * 15 13 11 18 18 H 1.48506 * 109.47313 * 329.99924 * 15 13 11 19 19 N 1.46497 * 109.47022 * 119.99544 * 2 1 3 20 20 C 1.34775 * 120.00290 * 275.00553 * 19 2 1 21 21 O 1.21284 * 120.00239 * 359.97438 * 20 19 2 22 22 C 1.50707 * 119.99766 * 179.97438 * 20 19 2 23 23 C 1.50706 * 109.46782 * 179.97438 * 22 20 19 24 24 C 1.34513 * 125.78833 * 89.71712 * 23 22 20 25 25 C 1.41384 * 106.84073 * 179.88758 * 24 23 22 26 26 C 1.34512 * 106.83911 * 0.37309 * 25 24 23 27 27 O 1.34297 * 125.78824 * 270.02492 * 23 22 20 28 28 H 1.09000 * 109.47812 * 299.99528 * 1 2 3 29 29 H 1.09001 * 109.46974 * 60.00366 * 1 2 3 30 30 H 1.09000 * 109.46929 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47103 * 54.99637 * 4 2 1 32 32 H 1.08998 * 109.46862 * 295.00449 * 4 2 1 33 33 H 1.09002 * 109.47153 * 59.99783 * 5 4 2 34 34 H 1.09001 * 109.46832 * 299.99974 * 5 4 2 35 35 H 0.96996 * 119.99606 * 0.02562 * 6 5 4 36 36 H 1.09001 * 109.47380 * 300.00190 * 9 7 6 37 37 H 1.09002 * 109.47060 * 60.00278 * 9 7 6 38 38 H 0.96999 * 120.00126 * 180.02562 * 14 13 11 39 39 H 0.97003 * 119.99849 * 95.00425 * 19 2 1 40 40 H 1.08993 * 109.47314 * 299.99790 * 22 20 19 41 41 H 1.08997 * 109.47088 * 60.00406 * 22 20 19 42 42 H 1.08009 * 126.57824 * 0.02562 * 24 23 22 43 43 H 1.08000 * 126.57696 * 180.16323 * 25 24 23 44 44 H 1.07999 * 125.78882 * 179.74885 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7211 -1.2492 5 6 3.5649 -0.6131 -1.3136 6 7 4.0534 -1.3042 -2.5094 7 6 5.3742 -1.3396 -2.7749 8 8 6.1585 -0.7997 -2.0237 9 6 5.8767 -2.0510 -4.0048 10 16 7.6806 -1.9230 -4.0810 11 6 7.9878 -2.8129 -5.5705 12 1 7.1642 -3.2364 -6.1261 13 6 9.2883 -2.9706 -6.0291 14 7 10.2922 -2.4557 -5.3511 15 14 9.6140 -3.9146 -7.6077 16 1 9.5855 -2.9778 -8.7596 17 1 10.9475 -4.5635 -7.5302 18 1 8.5679 -4.9531 -7.7883 19 7 2.0183 -0.6905 1.1962 20 6 2.1469 -0.0182 2.3572 21 8 1.8588 1.1587 2.4115 22 6 2.6487 -0.7288 3.5878 23 6 2.7000 0.2398 4.7413 24 6 1.6999 0.4865 5.6063 25 6 2.1783 1.4529 6.5207 26 6 3.4393 1.7451 6.1547 27 8 3.7499 1.0073 5.0763 28 1 -0.3635 0.5137 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6055 -0.2617 -2.1369 32 1 1.7517 -1.7714 -1.2056 33 1 3.9995 -1.0726 -0.4258 34 1 3.8532 0.4372 -1.3572 35 1 3.4261 -1.7357 -3.1104 36 1 5.5889 -3.1013 -3.9601 37 1 5.4417 -1.5925 -4.8929 38 1 11.2011 -2.5656 -5.6717 39 1 2.2490 -1.6317 1.1527 40 1 1.9758 -1.5505 3.8326 41 1 3.6478 -1.1212 3.3987 42 1 0.7202 0.0318 5.6043 43 1 1.6344 1.8778 7.3514 44 1 4.0912 2.4531 6.6447 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495454119.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:18:26 Heat of formation + Delta-G solvation = -70.440834 kcal Electronic energy + Delta-G solvation = -25592.680249 eV Core-core repulsion = 21637.750129 eV Total energy + Delta-G solvation = -3954.930120 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.79939 -40.18989 -39.16376 -36.90374 -34.47193 -33.47622 -32.73674 -32.44157 -31.53856 -30.08951 -28.16296 -27.38093 -25.50649 -23.65673 -22.11627 -21.98373 -21.08259 -20.51194 -20.28290 -17.94695 -17.71045 -17.58887 -16.66470 -16.25217 -16.06446 -15.85512 -15.61228 -15.36001 -14.84355 -14.81560 -14.11870 -14.04370 -13.97458 -13.78708 -13.45603 -13.13307 -13.06756 -12.96596 -12.83634 -12.60253 -12.38509 -12.19963 -12.09379 -11.67276 -11.56145 -11.29265 -11.07543 -11.03738 -10.77299 -10.26538 -10.12738 -9.83168 -9.52402 -9.39349 -9.08428 -8.92351 -8.72061 -8.25012 -6.51570 -6.22859 -3.93708 1.44445 2.28844 2.33345 2.64003 2.98362 3.00088 3.07462 3.21315 3.26720 3.30452 3.66483 4.19119 4.20056 4.37774 4.47193 4.57711 4.66571 4.70725 4.75993 4.92642 4.94331 5.03871 5.05601 5.12282 5.19901 5.27426 5.34159 5.53620 5.56922 5.60675 5.64240 5.71158 5.81626 5.83980 5.87186 5.90411 6.11361 6.13103 6.24532 6.56497 6.88936 7.10032 7.58113 7.66676 7.86715 8.33814 8.58632 9.22361 10.84548 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017979 B = 0.001738 C = 0.001613 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1557.018572 B =16104.919111 C =17350.895972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.146 3.854 3 H 0.093 0.907 4 C -0.139 4.139 5 C 0.121 3.879 6 N -0.740 5.740 7 C 0.530 3.470 8 O -0.516 6.516 9 C -0.153 4.153 10 S -0.061 6.061 11 C -0.536 4.536 12 H 0.073 0.927 13 C 0.073 3.927 14 N -0.867 5.867 15 Si 0.919 3.081 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 N -0.725 5.725 20 C 0.516 3.484 21 O -0.526 6.526 22 C -0.064 4.064 23 C 0.005 3.995 24 C -0.197 4.197 25 C -0.216 4.216 26 C -0.035 4.035 27 O -0.170 6.170 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.077 0.923 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.398 0.602 36 H 0.089 0.911 37 H 0.089 0.911 38 H 0.268 0.732 39 H 0.402 0.598 40 H 0.124 0.876 41 H 0.115 0.885 42 H 0.145 0.855 43 H 0.147 0.853 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.268 1.948 18.285 29.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.041 3.959 3 H 0.111 0.889 4 C -0.178 4.178 5 C -0.004 4.004 6 N -0.395 5.395 7 C 0.316 3.684 8 O -0.390 6.390 9 C -0.304 4.304 10 S 0.166 5.834 11 C -0.684 4.684 12 H 0.091 0.909 13 C -0.136 4.136 14 N -0.502 5.502 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.207 1.207 18 H -0.197 1.197 19 N -0.379 5.379 20 C 0.302 3.698 21 O -0.401 6.401 22 C -0.103 4.103 23 C -0.046 4.046 24 C -0.216 4.216 25 C -0.235 4.235 26 C -0.103 4.103 27 O -0.066 6.066 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.232 0.768 36 H 0.108 0.892 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.237 0.763 40 H 0.142 0.858 41 H 0.133 0.867 42 H 0.163 0.837 43 H 0.165 0.835 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -21.685 3.750 19.439 29.362 hybrid contribution -1.079 -1.812 -2.032 2.929 sum -22.764 1.939 17.406 28.722 Atomic orbital electron populations 1.22161 0.94752 1.02258 1.02855 1.20896 0.94153 0.97813 0.83042 0.88890 1.22125 0.95464 1.01939 0.98222 1.21260 0.92582 0.98049 0.88475 1.46000 1.07834 1.58608 1.27095 1.20327 0.81483 0.79733 0.86817 1.90714 1.54953 1.44298 1.49064 1.23532 1.06894 1.02514 0.97468 1.85424 0.92137 1.72698 1.33143 1.22867 0.95476 1.40130 1.09971 0.90923 1.24995 0.95044 0.95660 0.97893 1.70018 0.99392 1.42647 1.38192 0.86165 0.77809 0.79577 0.81917 1.20263 1.20741 1.19709 1.46066 1.67999 1.14216 1.09574 1.20386 0.77696 0.87438 0.84293 1.90758 1.48918 1.15717 1.84756 1.20102 1.05404 0.95956 0.88872 1.21440 0.86945 0.97535 0.98686 1.21499 0.99967 1.02417 0.97718 1.21794 0.96116 1.02380 1.03206 1.24035 0.98006 0.98903 0.89357 1.84015 1.38613 1.44042 1.39928 0.91917 0.91374 0.92312 0.89387 0.90471 0.91622 0.91550 0.76842 0.89236 0.89228 0.92165 0.76313 0.85840 0.86669 0.83689 0.83494 0.78078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.01 9.48 37.16 0.35 -0.66 16 2 C 0.15 1.05 2.57 -67.94 -0.17 0.88 16 3 H 0.09 0.90 7.58 -51.93 -0.39 0.50 16 4 C -0.14 -0.88 4.87 -26.74 -0.13 -1.01 16 5 C 0.12 1.27 5.56 -4.04 -0.02 1.25 16 6 N -0.74 -9.09 5.56 -60.29 -0.33 -9.42 16 7 C 0.53 9.65 7.85 -10.99 -0.09 9.56 16 8 O -0.52 -11.69 15.86 5.56 0.09 -11.60 16 9 C -0.15 -3.03 6.16 36.01 0.22 -2.80 16 10 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 11 C -0.54 -15.18 9.50 30.94 0.29 -14.89 16 12 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 13 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 14 N -0.87 -26.09 13.22 55.49 0.73 -25.36 16 15 Si 0.92 21.26 29.55 -169.99 -5.02 16.24 16 16 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 17 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 18 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 19 N -0.73 -4.92 4.53 -53.81 -0.24 -5.16 16 20 C 0.52 4.82 7.79 -10.98 -0.09 4.74 16 21 O -0.53 -7.29 15.70 5.55 0.09 -7.20 16 22 C -0.06 -0.44 6.23 -29.03 -0.18 -0.62 16 23 C 0.00 0.05 5.81 -35.62 -0.21 -0.16 16 24 C -0.20 -1.84 10.81 -39.70 -0.43 -2.27 16 25 C -0.22 -1.90 10.91 -39.70 -0.43 -2.33 16 26 C -0.04 -0.32 12.09 29.42 0.36 0.04 16 27 O -0.17 -1.95 10.65 5.71 0.06 -1.89 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.74 7.75 -51.93 -0.40 0.34 16 34 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.40 3.58 8.47 -40.82 -0.35 3.24 16 36 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 37 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 38 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 39 H 0.40 1.70 8.60 -40.82 -0.35 1.35 16 40 H 0.12 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.15 1.07 8.06 -52.48 -0.42 0.64 16 43 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 44 H 0.20 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 396.20 15.07 5.97 5.97 Total: -1.00 -39.27 396.20 -8.03 -47.30 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -6.53 Total: 1.26 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -0.62 Total: -6.28 kcal Atomic # 7 Polarization: -40.10 SS G_CDS: 0.16 Total: -39.94 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: 0.24 Total: -20.69 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -39.27 -8.03 -47.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495454119.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.141 kcal (2) G-P(sol) polarization free energy of solvation -39.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds