Wall clock time and date at job start Wed Apr 1 2020 00:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 N 1.46506 * 109.47390 * 179.97438 * 5 4 2 7 7 C 1.34770 * 120.00207 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00422 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00203 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47491 * 180.02562 * 9 7 6 11 11 C 1.34509 * 125.79078 * 89.71405 * 10 9 7 12 12 C 1.41379 * 106.84293 * 179.89118 * 11 10 9 13 13 C 1.34511 * 106.83806 * 0.37109 * 12 11 10 14 14 O 1.34301 * 125.78776 * 270.02514 * 10 9 7 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00336 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99494 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 90.00156 * 24 22 20 26 26 H 1.48505 * 109.47177 * 209.99950 * 24 22 20 27 27 H 1.48496 * 109.47259 * 329.99923 * 24 22 20 28 28 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 30 30 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 31 31 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 32 32 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 33 33 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 34 34 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 35 35 H 0.97004 * 119.99536 * 0.02562 * 6 5 4 36 36 H 1.09003 * 109.47196 * 300.00327 * 9 7 6 37 37 H 1.09003 * 109.46915 * 59.99643 * 9 7 6 38 38 H 1.08007 * 126.57906 * 0.03006 * 11 10 9 39 39 H 1.07999 * 126.58098 * 180.16762 * 12 11 10 40 40 H 1.08001 * 125.78967 * 179.74428 * 13 12 11 41 41 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 42 42 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 43 43 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 44 44 H 0.97003 * 119.99714 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 7 4.0532 -1.3040 -2.5099 7 6 5.3741 -1.3402 -2.7750 8 8 6.1585 -0.8013 -2.0233 9 6 5.8765 -2.0505 -4.0056 10 6 7.3785 -1.9453 -4.0684 11 6 8.2512 -2.8133 -3.5260 12 6 9.5466 -2.3330 -3.8259 13 6 9.3880 -1.1958 -4.5266 14 8 8.0726 -0.9658 -4.6704 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.9413 -0.9422 8.4756 24 14 3.1322 1.6473 7.9086 25 1 1.7195 1.7843 8.3449 26 1 4.0327 2.1152 8.9929 27 1 3.3561 2.4673 6.6910 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4262 35 1 3.4258 -1.7355 -3.1109 36 1 5.5876 -3.1007 -3.9623 37 1 5.4421 -1.5906 -4.8933 38 1 8.0088 -3.7070 -2.9701 39 1 10.4837 -2.7895 -3.5435 40 1 10.1835 -0.5729 -4.9083 41 1 2.2492 -1.6319 1.1524 42 1 1.9698 -1.5528 3.8298 43 1 3.6437 -1.1227 3.4038 44 1 4.0811 -0.5988 9.3720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495663886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:50 Heat of formation + Delta-G solvation = -69.519282 kcal Electronic energy + Delta-G solvation = -25705.205067 eV Core-core repulsion = 21750.314908 eV Total energy + Delta-G solvation = -3954.890159 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.83231 -40.06031 -39.46026 -36.74298 -34.75097 -33.48459 -32.59085 -32.42221 -31.84432 -29.60007 -28.61116 -27.30991 -25.59734 -23.82330 -22.03407 -21.72117 -21.36320 -20.49041 -20.36610 -17.96931 -17.78495 -17.51454 -16.72575 -16.39108 -16.07970 -15.97206 -15.83705 -15.04507 -14.95022 -14.76281 -14.48193 -14.05837 -13.87470 -13.62323 -13.40030 -13.12335 -13.09264 -13.00757 -12.94996 -12.77829 -12.28718 -12.21802 -12.06400 -11.78538 -11.61668 -11.24712 -11.16929 -10.99263 -10.58493 -10.30144 -10.14757 -9.84054 -9.51098 -9.46563 -9.03538 -8.97262 -8.75095 -8.48452 -6.89847 -6.27239 -3.98763 1.40234 2.26376 2.31460 2.60412 2.77326 2.94031 2.97529 3.30900 3.35071 3.52388 3.66231 4.15108 4.34799 4.36801 4.40844 4.57739 4.63878 4.66865 4.71995 4.77596 4.85416 4.92935 5.11798 5.15404 5.19739 5.27228 5.32941 5.50724 5.53603 5.57314 5.63891 5.68354 5.77929 5.80571 5.90912 6.01514 6.02928 6.09561 6.22484 6.55335 6.84453 7.05998 7.59419 7.84712 7.95858 8.43373 8.49253 9.18997 10.82013 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.002083 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.531749 B =13438.456650 C =15283.463587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.147 3.853 3 H 0.091 0.909 4 C -0.137 4.137 5 C 0.116 3.884 6 N -0.731 5.731 7 C 0.509 3.491 8 O -0.521 6.521 9 C -0.059 4.059 10 C -0.001 4.001 11 C -0.193 4.193 12 C -0.213 4.213 13 C -0.037 4.037 14 O -0.173 6.173 15 N -0.734 5.734 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.125 4.125 19 S -0.142 6.142 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.095 3.905 23 N -0.881 5.881 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.063 0.937 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.401 0.599 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.203 0.797 41 H 0.398 0.602 42 H 0.096 0.904 43 H 0.097 0.903 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.605 -5.983 -31.978 32.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.041 3.959 3 H 0.109 0.891 4 C -0.175 4.175 5 C -0.007 4.007 6 N -0.384 5.384 7 C 0.294 3.706 8 O -0.395 6.395 9 C -0.099 4.099 10 C -0.051 4.051 11 C -0.212 4.212 12 C -0.232 4.232 13 C -0.104 4.104 14 O -0.069 6.069 15 N -0.389 5.389 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.276 4.276 19 S 0.085 5.915 20 C -0.668 4.668 21 H 0.106 0.894 22 C -0.114 4.114 23 N -0.517 5.517 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.200 1.200 27 H -0.159 1.159 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.235 0.765 36 H 0.142 0.858 37 H 0.130 0.870 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.220 0.780 41 H 0.232 0.768 42 H 0.115 0.885 43 H 0.115 0.885 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.625 -3.383 -31.277 31.465 hybrid contribution 0.271 -1.621 0.240 1.661 sum 0.896 -5.004 -31.037 31.450 Atomic orbital electron populations 1.22173 0.94918 1.02177 1.02848 1.20792 0.94208 0.97739 0.83168 0.89058 1.22107 0.94506 1.02128 0.98790 1.21433 0.93592 0.98081 0.87599 1.45948 1.07238 1.57729 1.27505 1.20436 0.82370 0.80764 0.87013 1.90810 1.55120 1.44499 1.49081 1.20064 0.87971 1.03594 0.98266 1.21420 0.93179 0.89615 1.00904 1.21552 0.92342 1.02635 1.04695 1.21830 0.98813 0.98294 1.04306 1.24020 0.82823 0.99558 1.04038 1.83975 1.18275 1.43650 1.61017 1.46088 1.69307 1.13945 1.09531 1.20272 0.76763 0.87224 0.83862 1.90698 1.48333 1.15745 1.84468 1.23288 1.04539 1.03442 0.96298 1.84777 1.87349 1.16582 1.02822 1.22318 1.50746 0.98674 0.95110 0.89402 1.24718 0.93373 0.98293 0.94975 1.69940 1.43596 1.35777 1.02407 0.86731 0.79277 0.85259 0.80563 1.19229 1.19951 1.15899 0.92447 0.91467 0.91814 0.90504 0.89659 0.91062 0.90782 0.76542 0.85833 0.87007 0.83523 0.83360 0.78042 0.76755 0.88536 0.88480 0.91956 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.48 37.16 0.35 -1.12 16 2 C 0.15 1.41 2.57 -67.93 -0.17 1.24 16 3 H 0.09 1.09 7.58 -51.93 -0.39 0.70 16 4 C -0.14 -0.81 4.87 -26.73 -0.13 -0.94 16 5 C 0.12 0.97 5.56 -4.04 -0.02 0.95 16 6 N -0.73 -4.70 5.56 -60.29 -0.33 -5.04 16 7 C 0.51 4.79 7.82 -10.99 -0.09 4.70 16 8 O -0.52 -7.89 16.03 5.56 0.09 -7.80 16 9 C -0.06 -0.35 6.23 -29.04 -0.18 -0.54 16 10 C 0.00 -0.01 5.81 -35.63 -0.21 -0.21 16 11 C -0.19 -1.86 10.81 -39.71 -0.43 -2.29 16 12 C -0.21 -1.92 10.91 -39.70 -0.43 -2.36 16 13 C -0.04 -0.32 12.09 29.41 0.36 0.04 16 14 O -0.17 -1.84 10.65 5.72 0.06 -1.78 16 15 N -0.73 -8.62 4.53 -53.80 -0.24 -8.87 16 16 C 0.53 9.22 7.81 -10.98 -0.09 9.14 16 17 O -0.52 -10.95 15.53 5.55 0.09 -10.87 16 18 C -0.13 -2.42 6.16 36.01 0.22 -2.20 16 19 S -0.14 -3.62 18.55 -107.50 -1.99 -5.62 16 20 C -0.52 -15.17 10.04 30.94 0.31 -14.86 16 21 H 0.09 2.66 8.03 -52.48 -0.42 2.24 16 22 C 0.09 2.81 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.84 13.97 55.49 0.78 -26.07 16 24 Si 0.86 22.05 27.74 -169.99 -4.72 17.34 16 25 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 26 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.24 -6.05 6.74 56.52 0.38 -5.67 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.77 7.75 -51.92 -0.40 0.37 16 35 H 0.40 1.04 8.47 -40.82 -0.35 0.70 16 36 H 0.12 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.15 1.17 8.06 -52.48 -0.42 0.75 16 39 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.20 0.96 8.06 -52.49 -0.42 0.54 16 41 H 0.40 3.62 8.60 -40.82 -0.35 3.27 16 42 H 0.10 1.72 8.14 -51.91 -0.42 1.30 16 43 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 44 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 393.52 15.07 5.93 5.93 Total: -1.00 -39.76 393.52 -7.52 -47.28 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.57 Total: 1.21 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -0.61 Total: -5.72 kcal Atomic # 7 Polarization: -40.17 SS G_CDS: 0.20 Total: -39.97 kcal Atomic # 8 Polarization: -20.68 SS G_CDS: 0.24 Total: -20.45 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.72 Total: 17.34 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.62 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -39.76 -7.52 -47.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495663886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.237 kcal (2) G-P(sol) polarization free energy of solvation -39.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds