Wall clock time and date at job start Wed Apr 1 2020 00:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09007 * 109.47145 * 2 1 4 4 C 1.53006 * 109.47065 * 240.00872 * 2 1 3 5 5 C 1.52992 * 109.47159 * 174.99654 * 4 2 1 6 6 N 1.46506 * 109.47390 * 179.97438 * 5 4 2 7 7 C 1.34770 * 120.00207 * 180.02562 * 6 5 4 8 8 O 1.21281 * 120.00422 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00203 * 180.02562 * 7 6 5 10 10 C 1.50699 * 109.47491 * 180.02562 * 9 7 6 11 11 C 1.34509 * 125.79078 * 89.71405 * 10 9 7 12 12 C 1.41379 * 106.84293 * 179.89118 * 11 10 9 13 13 C 1.34511 * 106.83806 * 0.37109 * 12 11 10 14 14 O 1.34301 * 125.78776 * 270.02514 * 10 9 7 15 15 N 1.46497 * 109.47313 * 120.00897 * 2 1 3 16 16 C 1.34777 * 119.99525 * 274.99614 * 15 2 1 17 17 O 1.21283 * 120.00463 * 0.02562 * 16 15 2 18 18 C 1.50700 * 119.99675 * 179.72583 * 16 15 2 19 19 S 1.80997 * 109.47151 * 180.27780 * 18 16 15 20 20 C 1.76196 * 100.00314 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00018 * 0.02562 * 20 19 18 22 22 C 1.38799 * 120.00626 * 179.97438 * 20 19 18 23 23 N 1.31628 * 120.00336 * 180.02562 * 22 20 19 24 24 Si 1.86804 * 119.99494 * 0.02562 * 22 20 19 25 25 H 1.48497 * 109.47141 * 90.00156 * 24 22 20 26 26 H 1.48505 * 109.47177 * 209.99950 * 24 22 20 27 27 H 1.48496 * 109.47259 * 329.99923 * 24 22 20 28 28 H 1.09002 * 109.46839 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.46617 * 299.99415 * 1 2 3 30 30 H 1.09003 * 109.47371 * 59.99288 * 1 2 3 31 31 H 1.09002 * 109.46733 * 294.99544 * 4 2 1 32 32 H 1.09003 * 109.47212 * 54.99369 * 4 2 1 33 33 H 1.08994 * 109.47570 * 300.00116 * 5 4 2 34 34 H 1.09008 * 109.47295 * 60.00253 * 5 4 2 35 35 H 0.97004 * 119.99536 * 0.02562 * 6 5 4 36 36 H 1.09003 * 109.47196 * 300.00327 * 9 7 6 37 37 H 1.09003 * 109.46915 * 59.99643 * 9 7 6 38 38 H 1.08007 * 126.57906 * 0.03006 * 11 10 9 39 39 H 1.07999 * 126.58098 * 180.16762 * 12 11 10 40 40 H 1.08001 * 125.78967 * 179.74428 * 13 12 11 41 41 H 0.97000 * 120.00580 * 95.00360 * 15 2 1 42 42 H 1.09009 * 109.47352 * 300.27556 * 18 16 15 43 43 H 1.08998 * 109.47585 * 60.27844 * 18 16 15 44 44 H 0.97003 * 119.99714 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 3.5648 -0.6131 -1.3139 6 7 4.0532 -1.3040 -2.5099 7 6 5.3741 -1.3402 -2.7750 8 8 6.1585 -0.8013 -2.0233 9 6 5.8765 -2.0505 -4.0056 10 6 7.3785 -1.9453 -4.0684 11 6 8.2512 -2.8133 -3.5260 12 6 9.5466 -2.3330 -3.8259 13 6 9.3880 -1.1958 -4.5266 14 8 8.0726 -0.9658 -4.6704 15 7 2.0184 -0.6908 1.1960 16 6 2.1472 -0.0185 2.3570 17 8 1.8583 1.1582 2.4118 18 6 2.6437 -0.7305 3.5889 19 16 2.6984 0.4307 4.9762 20 6 3.2947 -0.6363 6.2451 21 1 3.5050 -1.6725 6.0248 22 6 3.4953 -0.1451 7.5277 23 7 3.9413 -0.9422 8.4756 24 14 3.1322 1.6473 7.9086 25 1 1.7195 1.7843 8.3449 26 1 4.0327 2.1152 8.9929 27 1 3.3561 2.4673 6.6910 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3632 0.5137 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 1.7517 -1.7714 -1.2058 32 1 1.6053 -0.2615 -2.1371 33 1 3.8531 0.4371 -1.3574 34 1 3.9995 -1.0727 -0.4262 35 1 3.4258 -1.7355 -3.1109 36 1 5.5876 -3.1007 -3.9623 37 1 5.4421 -1.5906 -4.8933 38 1 8.0088 -3.7070 -2.9701 39 1 10.4837 -2.7895 -3.5435 40 1 10.1835 -0.5729 -4.9083 41 1 2.2492 -1.6319 1.1524 42 1 1.9698 -1.5528 3.8298 43 1 3.6437 -1.1227 3.4038 44 1 4.0811 -0.5988 9.3720 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495663886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:15:49 Heat of formation + Delta-G solvation = -100.115520 kcal Electronic energy + Delta-G solvation = -25706.531819 eV Core-core repulsion = 21750.314908 eV Total energy + Delta-G solvation = -3956.216911 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.48731 -40.96995 -40.55425 -37.70132 -35.63081 -34.68938 -34.14822 -33.32470 -32.84266 -30.55120 -29.76020 -27.90212 -27.86510 -24.54485 -22.70380 -22.57763 -22.12573 -21.60829 -21.06903 -19.90403 -18.52512 -18.20982 -17.98615 -17.38918 -17.09954 -16.87635 -16.68135 -16.65608 -16.38538 -15.91793 -15.35483 -15.04651 -14.92775 -14.82661 -14.75565 -14.40238 -14.01653 -13.76858 -13.72944 -13.56126 -13.38003 -13.34030 -13.07428 -13.01932 -12.72905 -12.61886 -12.40381 -12.37701 -11.90855 -11.87377 -11.18616 -11.11551 -10.96360 -10.83636 -10.55447 -10.21729 -10.07421 -9.39834 -9.01123 -8.53229 -6.23919 0.74562 0.98096 1.29501 1.45629 1.55010 1.57452 1.58561 1.65812 2.02989 2.22198 2.27093 2.34317 2.70871 2.84876 3.59820 3.72943 3.80308 3.91708 4.03596 4.10167 4.13474 4.17493 4.21285 4.37864 4.43877 4.44948 4.49278 4.49859 4.65823 4.83202 4.90528 4.92274 5.00389 5.04856 5.14708 5.22349 5.34943 5.39910 5.54875 5.60134 5.69081 6.09550 6.18660 6.48174 6.53959 6.91921 7.22012 7.25451 8.59239 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011340 B = 0.002083 C = 0.001832 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2468.531749 B =13438.456650 C =15283.463587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 H 0.064 0.936 4 C -0.117 4.117 5 C 0.117 3.883 6 N -0.709 5.709 7 C 0.505 3.495 8 O -0.589 6.589 9 C -0.052 4.052 10 C -0.018 4.018 11 C -0.215 4.215 12 C -0.233 4.233 13 C -0.045 4.045 14 O -0.193 6.193 15 N -0.709 5.709 16 C 0.536 3.464 17 O -0.562 6.562 18 C -0.113 4.113 19 S -0.177 6.177 20 C -0.529 4.529 21 H 0.062 0.938 22 C 0.044 3.956 23 N -0.917 5.917 24 Si 0.915 3.085 25 H -0.260 1.260 26 H -0.259 1.259 27 H -0.239 1.239 28 H 0.076 0.924 29 H 0.031 0.969 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.116 0.884 33 H 0.044 0.956 34 H 0.051 0.949 35 H 0.424 0.576 36 H 0.162 0.838 37 H 0.142 0.858 38 H 0.157 0.843 39 H 0.163 0.837 40 H 0.233 0.767 41 H 0.415 0.585 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.864 -6.822 -34.849 35.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.036 3.964 3 H 0.083 0.917 4 C -0.155 4.155 5 C -0.008 4.008 6 N -0.362 5.362 7 C 0.292 3.708 8 O -0.468 6.468 9 C -0.090 4.090 10 C -0.068 4.068 11 C -0.235 4.235 12 C -0.252 4.252 13 C -0.112 4.112 14 O -0.090 6.090 15 N -0.363 5.363 16 C 0.321 3.679 17 O -0.440 6.440 18 C -0.264 4.264 19 S 0.050 5.950 20 C -0.676 4.676 21 H 0.080 0.920 22 C -0.161 4.161 23 N -0.555 5.555 24 Si 0.737 3.263 25 H -0.185 1.185 26 H -0.183 1.183 27 H -0.163 1.163 28 H 0.095 0.905 29 H 0.050 0.950 30 H 0.107 0.893 31 H 0.126 0.874 32 H 0.134 0.866 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.263 0.737 36 H 0.179 0.821 37 H 0.160 0.840 38 H 0.175 0.825 39 H 0.181 0.819 40 H 0.249 0.751 41 H 0.252 0.748 42 H 0.133 0.867 43 H 0.126 0.874 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.889 -4.296 -34.217 34.497 hybrid contribution 0.739 -1.476 0.997 1.928 sum -0.149 -5.772 -33.220 33.718 Atomic orbital electron populations 1.22121 0.93748 1.03291 1.02362 1.21019 0.95038 0.96845 0.83467 0.91729 1.22008 0.92147 1.03744 0.97619 1.21294 0.95382 0.96496 0.87597 1.45724 1.06887 1.56624 1.26997 1.21085 0.82589 0.79849 0.87249 1.90788 1.56927 1.47574 1.51541 1.20252 0.85779 1.05612 0.97405 1.22098 0.94927 0.89193 1.00617 1.21900 0.92945 1.03448 1.05168 1.22187 0.99455 0.98831 1.04699 1.24707 0.82917 0.99890 1.03725 1.83968 1.19168 1.44322 1.61520 1.45907 1.67309 1.14594 1.08507 1.19902 0.76746 0.86591 0.84667 1.90686 1.50704 1.17461 1.85195 1.23291 1.05963 1.02346 0.94794 1.84698 1.87133 1.18591 1.04616 1.22461 1.50541 0.98131 0.96517 0.92017 1.25582 0.93253 1.02328 0.94940 1.70017 1.44669 1.37710 1.03075 0.85856 0.79657 0.80318 0.80477 1.18461 1.18330 1.16254 0.90458 0.95018 0.89305 0.87412 0.86611 0.93781 0.93071 0.73733 0.82092 0.83991 0.82540 0.81892 0.75065 0.74781 0.86716 0.87422 0.91348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.40 9.48 71.98 0.68 -1.72 16 2 C 0.14 2.42 2.57 44.99 0.12 2.53 16 3 H 0.06 1.51 7.58 -2.38 -0.02 1.49 16 4 C -0.12 -0.92 4.87 30.59 0.15 -0.77 16 5 C 0.12 1.75 5.56 86.38 0.48 2.23 16 6 N -0.71 -7.13 5.56 -463.07 -2.57 -9.71 16 7 C 0.51 8.77 7.82 87.66 0.69 9.46 16 8 O -0.59 -18.19 16.03 -3.03 -0.05 -18.24 16 9 C -0.05 -0.49 6.23 29.10 0.18 -0.30 16 10 C -0.02 -0.34 5.81 24.83 0.14 -0.19 16 11 C -0.22 -4.09 10.81 22.19 0.24 -3.85 16 12 C -0.23 -4.16 10.91 22.19 0.24 -3.92 16 13 C -0.05 -0.77 12.09 66.97 0.81 0.04 16 14 O -0.19 -4.04 10.65 -2.46 -0.03 -4.06 16 15 N -0.71 -15.46 4.53 -442.52 -2.00 -17.46 16 16 C 0.54 18.31 7.81 87.66 0.68 18.99 16 17 O -0.56 -24.07 15.53 -3.04 -0.05 -24.11 16 18 C -0.11 -4.33 6.16 71.24 0.44 -3.89 16 19 S -0.18 -9.15 18.55 -56.49 -1.05 -10.19 16 20 C -0.53 -31.42 10.04 67.95 0.68 -30.73 16 21 H 0.06 3.86 8.03 -2.91 -0.02 3.83 16 22 C 0.04 2.65 5.50 84.86 0.47 3.12 16 23 N -0.92 -56.70 13.97 21.65 0.30 -56.39 16 24 Si 0.92 45.94 27.74 68.60 1.90 47.84 16 25 H -0.26 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 27 H -0.24 -12.03 6.74 99.48 0.67 -11.36 16 28 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.03 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.09 0.93 8.14 -2.39 -0.02 0.92 16 31 H 0.11 0.31 8.14 -2.39 -0.02 0.29 16 32 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.05 1.02 7.75 -2.38 -0.02 1.00 16 35 H 0.42 0.25 8.47 -92.71 -0.79 -0.54 16 36 H 0.16 0.25 8.14 -2.39 -0.02 0.23 16 37 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 40 H 0.23 1.98 8.06 -2.91 -0.02 1.95 16 41 H 0.42 6.40 8.60 -92.71 -0.80 5.60 16 42 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 43 H 0.11 3.90 8.14 -2.40 -0.02 3.89 16 44 H 0.28 15.83 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -92.45 393.52 1.87 -90.59 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -0.59 Total: 10.75 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 6.00 Total: -9.01 kcal Atomic # 7 Polarization: -79.29 SS G_CDS: -4.27 Total: -83.56 kcal Atomic # 8 Polarization: -46.29 SS G_CDS: -0.12 Total: -46.42 kcal Atomic # 14 Polarization: 45.94 SS G_CDS: 1.90 Total: 47.84 kcal Atomic # 16 Polarization: -9.15 SS G_CDS: -1.05 Total: -10.19 kcal Total: -92.45 1.87 -90.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495663886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.528 kcal (2) G-P(sol) polarization free energy of solvation -92.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.867 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.587 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds