Wall clock time and date at job start Wed Apr 1 2020 00:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46921 * 2 1 4 4 C 1.53000 * 109.47387 * 120.00175 * 2 1 3 5 5 C 1.50709 * 109.46698 * 294.99946 * 4 2 1 6 6 C 1.38237 * 120.00614 * 264.71887 * 5 4 2 7 7 C 1.38219 * 120.01077 * 179.76861 * 6 5 4 8 8 C 1.38257 * 120.02833 * 0.51470 * 7 6 5 9 9 C 1.38193 * 120.01361 * 359.74093 * 8 7 6 10 10 C 1.38330 * 120.00820 * 85.00169 * 5 4 2 11 11 Cl 1.73604 * 120.01201 * 359.95422 * 10 5 4 12 12 C 1.50702 * 109.46945 * 239.99761 * 2 1 3 13 13 O 1.21281 * 120.00051 * 239.99842 * 12 2 1 14 14 N 1.34779 * 119.99840 * 60.00163 * 12 2 1 15 15 C 1.46494 * 119.99921 * 179.97438 * 14 12 2 16 16 C 1.53003 * 109.47283 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47269 * 305.00317 * 16 15 14 18 18 O 1.42903 * 109.46459 * 65.00211 * 16 15 14 19 19 C 1.53001 * 109.47376 * 185.00021 * 16 15 14 20 20 N 1.46497 * 109.46900 * 180.02562 * 19 16 15 21 21 C 1.36940 * 119.99699 * 180.02562 * 20 19 16 22 22 H 1.08003 * 120.00008 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99902 * 179.97438 * 21 20 19 24 24 N 1.31618 * 120.00041 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99798 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47427 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47212 * 120.00446 * 25 23 21 28 28 H 1.48501 * 109.46932 * 239.99751 * 25 23 21 29 29 H 1.08999 * 109.47534 * 60.00018 * 1 2 3 30 30 H 1.09005 * 109.47206 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46886 * 299.99878 * 1 2 3 32 32 H 1.09001 * 109.47109 * 54.99564 * 4 2 1 33 33 H 1.08999 * 109.47347 * 174.99952 * 4 2 1 34 34 H 1.07997 * 119.99124 * 0.02562 * 6 5 4 35 35 H 1.07997 * 119.98337 * 180.27541 * 7 6 5 36 36 H 1.08000 * 119.99481 * 179.76335 * 8 7 6 37 37 H 1.07997 * 120.01185 * 179.97438 * 9 8 7 38 38 H 0.96999 * 119.99691 * 0.02562 * 14 12 2 39 39 H 1.09005 * 109.47040 * 60.00167 * 15 14 12 40 40 H 1.08999 * 109.47079 * 299.99869 * 15 14 12 41 41 H 0.96700 * 114.00311 * 60.00313 * 18 16 15 42 42 H 1.08999 * 109.47164 * 300.00361 * 19 16 15 43 43 H 1.08997 * 109.47124 * 60.00063 * 19 16 15 44 44 H 0.96996 * 120.00310 * 359.97438 * 20 19 16 45 45 H 0.97001 * 119.99921 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0571 2.4766 6 6 2.5263 0.9553 3.0433 7 6 2.1589 1.6727 4.1661 8 6 0.9104 1.4848 4.7295 9 6 0.0269 0.5833 4.1670 10 6 0.3920 -0.1314 3.0397 11 17 -0.7175 -1.2637 2.3322 12 6 2.0323 -0.7105 -1.2305 13 8 2.7296 -1.6965 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 6 2.1954 -0.9403 -3.6507 16 6 1.6848 -0.2195 -4.9000 17 1 0.5984 -0.1420 -4.8563 18 8 2.2537 1.0900 -4.9602 19 6 2.0900 -1.0095 -6.1461 20 7 1.6016 -0.3189 -7.3422 21 6 1.8458 -0.8436 -8.5833 22 1 2.3981 -1.7666 -8.6803 23 6 1.3826 -0.1895 -9.7167 24 7 0.7082 0.9345 -9.5984 25 14 1.7151 -0.9056 -11.4096 26 1 2.4861 -2.1671 -11.2709 27 1 0.4255 -1.1865 -12.0904 28 1 2.4975 0.0674 -12.2136 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6054 -1.7198 1.2951 33 1 3.1264 -0.7995 1.2055 34 1 3.5032 1.0995 2.6061 35 1 2.8490 2.3776 4.6059 36 1 0.6254 2.0428 5.6091 37 1 -0.9483 0.4362 4.6073 38 1 1.1493 0.5389 -2.5435 39 1 1.8324 -1.9681 -3.6508 40 1 3.2854 -0.9399 -3.6506 41 1 3.2198 1.0976 -5.0012 42 1 3.1764 -1.0869 -6.1898 43 1 1.6561 -2.0083 -6.1001 44 1 1.1046 0.5095 -7.2551 45 1 0.3841 1.3913 -10.3904 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497063368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:44 Heat of formation + Delta-G solvation = -67.385722 kcal Electronic energy + Delta-G solvation = -26294.675071 eV Core-core repulsion = 22337.833723 eV Total energy + Delta-G solvation = -3956.841347 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.44269 -39.55341 -37.68406 -36.83492 -35.25153 -34.42075 -33.99341 -31.63801 -31.25489 -31.00015 -29.00544 -27.09081 -25.67015 -23.94033 -23.05167 -22.52062 -21.48361 -21.34222 -19.84643 -17.71896 -17.27992 -17.12148 -16.50170 -16.17980 -15.93342 -15.64498 -15.55084 -14.98561 -14.51117 -14.44534 -14.30883 -14.04142 -13.77157 -13.50133 -13.27491 -13.00903 -12.86815 -12.56001 -12.54048 -12.33771 -12.03607 -11.87535 -11.84493 -11.78271 -11.34899 -11.25669 -10.96686 -10.84566 -10.63502 -10.61762 -10.15167 -9.95642 -9.80255 -9.49486 -9.32192 -9.09574 -9.03035 -8.91843 -6.94929 -5.77362 -3.07038 0.70538 0.80831 1.77397 2.58545 3.03976 3.23479 3.42616 3.48233 3.50561 4.23089 4.32242 4.50470 4.52705 4.54326 4.67430 4.69792 4.76766 4.86648 4.88878 4.93265 5.13638 5.21133 5.24535 5.36153 5.47917 5.51044 5.54724 5.58607 5.60983 5.77849 5.80691 5.87454 5.92164 5.94667 5.96885 6.06182 6.19004 6.34934 6.40298 6.50027 6.66486 7.45913 7.68009 7.93188 8.17258 8.40856 9.52625 10.09231 10.45157 11.45013 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027720 B = 0.001763 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.853834 B =15874.631881 C =16050.556285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.101 4.101 3 H 0.098 0.902 4 C -0.067 4.067 5 C -0.068 4.068 6 C -0.105 4.105 7 C -0.113 4.113 8 C -0.114 4.114 9 C -0.110 4.110 10 C -0.034 4.034 11 Cl -0.062 7.062 12 C 0.516 3.484 13 O -0.544 6.544 14 N -0.720 5.720 15 C 0.089 3.911 16 C 0.089 3.911 17 H 0.104 0.896 18 O -0.552 6.552 19 C 0.127 3.873 20 N -0.726 5.726 21 C -0.243 4.243 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.930 5.930 25 Si 0.908 3.092 26 H -0.280 1.280 27 H -0.291 1.291 28 H -0.291 1.291 29 H 0.059 0.941 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.405 0.595 39 H 0.077 0.923 40 H 0.071 0.929 41 H 0.373 0.627 42 H 0.023 0.977 43 H 0.028 0.972 44 H 0.389 0.611 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.144 1.728 32.450 32.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.123 4.123 3 H 0.116 0.884 4 C -0.105 4.105 5 C -0.069 4.069 6 C -0.123 4.123 7 C -0.131 4.131 8 C -0.132 4.132 9 C -0.128 4.128 10 C -0.060 4.060 11 Cl -0.033 7.033 12 C 0.302 3.698 13 O -0.422 6.422 14 N -0.371 5.371 15 C -0.035 4.035 16 C 0.029 3.971 17 H 0.122 0.878 18 O -0.357 6.357 19 C -0.002 4.002 20 N -0.371 5.371 21 C -0.374 4.374 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.578 5.578 25 Si 0.739 3.261 26 H -0.205 1.205 27 H -0.218 1.218 28 H -0.218 1.218 29 H 0.078 0.922 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.106 0.894 33 H 0.104 0.896 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.240 0.760 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.220 0.780 42 H 0.040 0.960 43 H 0.046 0.954 44 H 0.224 0.776 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.026 0.968 32.327 32.341 hybrid contribution 0.184 0.012 -1.096 1.112 sum 0.158 0.980 31.230 31.246 Atomic orbital electron populations 1.22256 0.92582 1.03202 1.02857 1.21237 0.98020 1.00705 0.92321 0.88387 1.20482 1.02514 0.98608 0.88866 1.19802 0.92279 0.97586 0.97259 1.21102 0.99547 0.95574 0.96055 1.21272 0.96621 0.99272 0.95938 1.21125 0.93789 0.98116 1.00169 1.21080 1.00629 0.96355 0.94773 1.20870 0.91960 0.96420 0.96795 1.98382 1.61847 1.60103 1.82971 1.20548 0.80032 0.84556 0.84625 1.90700 1.38153 1.26403 1.86908 1.45942 1.53645 1.32165 1.05362 1.22108 0.99850 0.97148 0.84393 1.22386 0.98936 0.83423 0.92327 0.87842 1.86574 1.25335 1.27170 1.96617 1.21194 0.97160 0.95009 0.86863 1.42235 1.66571 1.28106 1.00143 1.19271 1.29343 1.05191 0.83638 0.91149 1.24767 1.00838 0.97413 0.97906 1.69689 1.41972 1.17818 1.28301 0.86106 0.77374 0.78074 0.84551 1.20546 1.21829 1.21818 0.92212 0.91466 0.91031 0.89426 0.89571 0.84962 0.85356 0.85184 0.84967 0.76021 0.90490 0.91096 0.77954 0.95951 0.95390 0.77650 0.93523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 7.32 37.16 0.27 -1.01 16 2 C -0.10 -0.92 2.71 -91.77 -0.25 -1.17 16 3 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 4 C -0.07 -0.61 3.97 -27.88 -0.11 -0.72 16 5 C -0.07 -0.55 4.86 -104.58 -0.51 -1.06 16 6 C -0.10 -0.70 9.68 -39.59 -0.38 -1.09 16 7 C -0.11 -0.64 10.05 -39.58 -0.40 -1.04 16 8 C -0.11 -0.64 10.05 -39.59 -0.40 -1.04 16 9 C -0.11 -0.73 9.83 -39.55 -0.39 -1.12 16 10 C -0.03 -0.27 5.18 -39.50 -0.20 -0.48 16 11 Cl -0.06 -0.53 23.12 -51.86 -1.20 -1.73 16 12 C 0.52 6.27 7.15 -10.98 -0.08 6.20 16 13 O -0.54 -8.56 15.92 5.56 0.09 -8.47 16 14 N -0.72 -8.26 5.40 -60.29 -0.33 -8.59 16 15 C 0.09 1.17 5.31 -4.04 -0.02 1.15 16 16 C 0.09 1.36 3.09 -26.73 -0.08 1.27 16 17 H 0.10 1.62 8.14 -51.93 -0.42 1.20 16 18 O -0.55 -8.67 13.03 -35.23 -0.46 -9.13 16 19 C 0.13 2.45 5.92 -4.04 -0.02 2.42 16 20 N -0.73 -18.35 5.49 -59.91 -0.33 -18.68 16 21 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 22 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 23 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 24 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 25 Si 0.91 22.50 29.55 -169.99 -5.02 17.47 16 26 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.83 16 28 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 29 H 0.06 0.47 7.56 -51.93 -0.39 0.07 16 30 H 0.07 0.63 6.73 -51.93 -0.35 0.28 16 31 H 0.07 0.58 5.29 -51.93 -0.27 0.30 16 32 H 0.09 0.91 7.13 -51.93 -0.37 0.54 16 33 H 0.09 0.81 7.86 -51.93 -0.41 0.40 16 34 H 0.13 0.71 8.06 -52.49 -0.42 0.29 16 35 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 36 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 37 H 0.13 0.69 8.06 -52.49 -0.42 0.26 16 38 H 0.40 4.07 7.89 -40.82 -0.32 3.75 16 39 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.37 4.92 9.05 45.56 0.41 5.33 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 44 H 0.39 10.53 7.54 -40.82 -0.31 10.22 16 45 H 0.25 7.49 8.31 -40.82 -0.34 7.15 16 LS Contribution 383.77 15.07 5.78 5.78 Total: -1.00 -33.81 383.77 -9.35 -43.15 By element: Atomic # 1 Polarization: 18.78 SS G_CDS: -5.79 Total: 12.99 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -2.82 Total: -5.17 kcal Atomic # 7 Polarization: -54.98 SS G_CDS: 0.07 Total: -54.91 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -0.37 Total: -17.60 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.47 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.20 Total: -1.73 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -33.81 -9.35 -43.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497063368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.234 kcal (2) G-P(sol) polarization free energy of solvation -33.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds