Wall clock time and date at job start Wed Apr 1 2020 00:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08992 * 109.46921 * 2 1 4 4 C 1.53000 * 109.47387 * 120.00175 * 2 1 3 5 5 C 1.50709 * 109.46698 * 294.99946 * 4 2 1 6 6 C 1.38237 * 120.00614 * 264.71887 * 5 4 2 7 7 C 1.38219 * 120.01077 * 179.76861 * 6 5 4 8 8 C 1.38257 * 120.02833 * 0.51470 * 7 6 5 9 9 C 1.38193 * 120.01361 * 359.74093 * 8 7 6 10 10 C 1.38330 * 120.00820 * 85.00169 * 5 4 2 11 11 Cl 1.73604 * 120.01201 * 359.95422 * 10 5 4 12 12 C 1.50702 * 109.46945 * 239.99761 * 2 1 3 13 13 O 1.21281 * 120.00051 * 239.99842 * 12 2 1 14 14 N 1.34779 * 119.99840 * 60.00163 * 12 2 1 15 15 C 1.46494 * 119.99921 * 179.97438 * 14 12 2 16 16 C 1.53003 * 109.47283 * 179.97438 * 15 14 12 17 17 H 1.08999 * 109.47269 * 305.00317 * 16 15 14 18 18 O 1.42903 * 109.46459 * 65.00211 * 16 15 14 19 19 C 1.53001 * 109.47376 * 185.00021 * 16 15 14 20 20 N 1.46497 * 109.46900 * 180.02562 * 19 16 15 21 21 C 1.36940 * 119.99699 * 180.02562 * 20 19 16 22 22 H 1.08003 * 120.00008 * 0.02562 * 21 20 19 23 23 C 1.38812 * 119.99902 * 179.97438 * 21 20 19 24 24 N 1.31618 * 120.00041 * 359.97438 * 23 21 20 25 25 Si 1.86797 * 119.99798 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47427 * 0.02562 * 25 23 21 27 27 H 1.48506 * 109.47212 * 120.00446 * 25 23 21 28 28 H 1.48501 * 109.46932 * 239.99751 * 25 23 21 29 29 H 1.08999 * 109.47534 * 60.00018 * 1 2 3 30 30 H 1.09005 * 109.47206 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46886 * 299.99878 * 1 2 3 32 32 H 1.09001 * 109.47109 * 54.99564 * 4 2 1 33 33 H 1.08999 * 109.47347 * 174.99952 * 4 2 1 34 34 H 1.07997 * 119.99124 * 0.02562 * 6 5 4 35 35 H 1.07997 * 119.98337 * 180.27541 * 7 6 5 36 36 H 1.08000 * 119.99481 * 179.76335 * 8 7 6 37 37 H 1.07997 * 120.01185 * 179.97438 * 9 8 7 38 38 H 0.96999 * 119.99691 * 0.02562 * 14 12 2 39 39 H 1.09005 * 109.47040 * 60.00167 * 15 14 12 40 40 H 1.08999 * 109.47079 * 299.99869 * 15 14 12 41 41 H 0.96700 * 114.00311 * 60.00313 * 18 16 15 42 42 H 1.08999 * 109.47164 * 300.00361 * 19 16 15 43 43 H 1.08997 * 109.47124 * 60.00063 * 19 16 15 44 44 H 0.96996 * 120.00310 * 359.97438 * 20 19 16 45 45 H 0.97001 * 119.99921 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0571 2.4766 6 6 2.5263 0.9553 3.0433 7 6 2.1589 1.6727 4.1661 8 6 0.9104 1.4848 4.7295 9 6 0.0269 0.5833 4.1670 10 6 0.3920 -0.1314 3.0397 11 17 -0.7175 -1.2637 2.3322 12 6 2.0323 -0.7105 -1.2305 13 8 2.7296 -1.6965 -1.1192 14 7 1.7067 -0.2500 -2.4546 15 6 2.1954 -0.9403 -3.6507 16 6 1.6848 -0.2195 -4.9000 17 1 0.5984 -0.1420 -4.8563 18 8 2.2537 1.0900 -4.9602 19 6 2.0900 -1.0095 -6.1461 20 7 1.6016 -0.3189 -7.3422 21 6 1.8458 -0.8436 -8.5833 22 1 2.3981 -1.7666 -8.6803 23 6 1.3826 -0.1895 -9.7167 24 7 0.7082 0.9345 -9.5984 25 14 1.7151 -0.9056 -11.4096 26 1 2.4861 -2.1671 -11.2709 27 1 0.4255 -1.1865 -12.0904 28 1 2.4975 0.0674 -12.2136 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8901 32 1 1.6054 -1.7198 1.2951 33 1 3.1264 -0.7995 1.2055 34 1 3.5032 1.0995 2.6061 35 1 2.8490 2.3776 4.6059 36 1 0.6254 2.0428 5.6091 37 1 -0.9483 0.4362 4.6073 38 1 1.1493 0.5389 -2.5435 39 1 1.8324 -1.9681 -3.6508 40 1 3.2854 -0.9399 -3.6506 41 1 3.2198 1.0976 -5.0012 42 1 3.1764 -1.0869 -6.1898 43 1 1.6561 -2.0083 -6.1001 44 1 1.1046 0.5095 -7.2551 45 1 0.3841 1.3913 -10.3904 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001497063368.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:09:43 Heat of formation + Delta-G solvation = -91.388013 kcal Electronic energy + Delta-G solvation = -26295.715888 eV Core-core repulsion = 22337.833723 eV Total energy + Delta-G solvation = -3957.882165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.26455 -40.26560 -38.97203 -37.41415 -36.10615 -35.96669 -35.31518 -33.20818 -32.15291 -31.56889 -30.42294 -27.74379 -27.21633 -25.12569 -23.98429 -23.50038 -22.77134 -22.12008 -20.78069 -19.24969 -18.47704 -18.00561 -17.53118 -17.18654 -16.76647 -16.63257 -16.43846 -16.15952 -15.95467 -15.48084 -15.24253 -14.95806 -14.81925 -14.70653 -14.47823 -14.08481 -13.81819 -13.81550 -13.46405 -13.24636 -13.17595 -12.96026 -12.79238 -12.66602 -12.46601 -12.38939 -12.13058 -11.97686 -11.93347 -11.89423 -11.81041 -11.25802 -11.12274 -10.99537 -10.70606 -10.12717 -9.83027 -9.57070 -9.01973 -7.95913 -5.25408 0.20638 0.32633 1.21182 1.47312 1.47985 1.58205 1.61272 2.11284 2.55371 2.70366 3.35205 3.44216 3.56485 3.61166 3.76579 3.82877 4.00300 4.01732 4.06099 4.19284 4.20673 4.34008 4.40862 4.43564 4.48458 4.61263 4.69351 4.72526 4.76389 4.83333 4.90604 4.92423 5.01862 5.15451 5.20250 5.26644 5.32793 5.38693 5.47798 5.48542 5.52991 5.90664 6.25457 6.51352 6.79230 7.21012 7.32658 8.07881 8.31314 9.27436 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.027720 B = 0.001763 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.853834 B =15874.631881 C =16050.556285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 H 0.117 0.883 4 C -0.061 4.061 5 C -0.081 4.081 6 C -0.111 4.111 7 C -0.113 4.113 8 C -0.112 4.112 9 C -0.117 4.117 10 C -0.047 4.047 11 Cl -0.075 7.075 12 C 0.516 3.484 13 O -0.582 6.582 14 N -0.712 5.712 15 C 0.102 3.898 16 C 0.109 3.891 17 H 0.101 0.899 18 O -0.562 6.562 19 C 0.122 3.878 20 N -0.739 5.739 21 C -0.248 4.248 22 H 0.076 0.924 23 C -0.076 4.076 24 N -0.967 5.967 25 Si 0.975 3.025 26 H -0.266 1.266 27 H -0.293 1.293 28 H -0.292 1.292 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.143 0.857 35 H 0.153 0.847 36 H 0.155 0.845 37 H 0.143 0.857 38 H 0.414 0.586 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.385 0.615 42 H 0.031 0.969 43 H 0.032 0.968 44 H 0.377 0.623 45 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 2.356 33.861 33.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 H 0.135 0.865 4 C -0.099 4.099 5 C -0.082 4.082 6 C -0.129 4.129 7 C -0.131 4.131 8 C -0.130 4.130 9 C -0.136 4.136 10 C -0.074 4.074 11 Cl -0.046 7.046 12 C 0.304 3.696 13 O -0.462 6.462 14 N -0.363 5.363 15 C -0.023 4.023 16 C 0.049 3.951 17 H 0.118 0.882 18 O -0.368 6.368 19 C -0.006 4.006 20 N -0.382 5.382 21 C -0.380 4.380 22 H 0.094 0.906 23 C -0.268 4.268 24 N -0.618 5.618 25 Si 0.804 3.196 26 H -0.190 1.190 27 H -0.220 1.220 28 H -0.220 1.220 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.161 0.839 35 H 0.170 0.830 36 H 0.173 0.827 37 H 0.161 0.839 38 H 0.251 0.749 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.234 0.766 42 H 0.049 0.951 43 H 0.050 0.950 44 H 0.210 0.790 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 0.497 1.582 33.768 33.808 hybrid contribution 0.068 -0.183 -1.420 1.434 sum 0.565 1.400 32.347 32.383 Atomic orbital electron populations 1.22220 0.91980 1.02699 1.03549 1.21223 0.98308 1.01140 0.90664 0.86467 1.20361 1.01885 0.98017 0.89664 1.19742 0.92814 0.98417 0.97238 1.21312 0.99797 0.95329 0.96488 1.21598 0.97065 0.99087 0.95305 1.21476 0.93431 0.97483 1.00584 1.21314 1.01505 0.96382 0.94405 1.21007 0.91935 0.96834 0.97593 1.98375 1.62271 1.60715 1.83262 1.21067 0.79193 0.84025 0.85326 1.90685 1.39973 1.28170 1.87415 1.45854 1.53443 1.32233 1.04814 1.21841 0.99837 0.96640 0.83994 1.22082 0.98740 0.82909 0.91381 0.88153 1.86554 1.26521 1.27209 1.96560 1.21402 0.97314 0.95250 0.86621 1.42407 1.66668 1.27982 1.01169 1.19685 1.28245 1.05077 0.84982 0.90589 1.25603 1.01448 0.98094 1.01691 1.69841 1.43635 1.19346 1.28961 0.85054 0.77015 0.77709 0.79838 1.19042 1.22012 1.21960 0.91375 0.92611 0.90416 0.91217 0.90221 0.83877 0.82979 0.82699 0.83876 0.74944 0.90896 0.90889 0.76637 0.95147 0.95003 0.79040 0.93975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 7.32 71.98 0.53 -1.85 16 2 C -0.09 -1.59 2.71 -11.54 -0.03 -1.62 16 3 H 0.12 1.60 8.14 -2.39 -0.02 1.58 16 4 C -0.06 -1.12 3.97 29.85 0.12 -1.00 16 5 C -0.08 -1.24 4.86 -19.84 -0.10 -1.33 16 6 C -0.11 -1.31 9.68 22.27 0.22 -1.09 16 7 C -0.11 -0.99 10.05 22.27 0.22 -0.76 16 8 C -0.11 -0.97 10.05 22.26 0.22 -0.74 16 9 C -0.12 -1.38 9.83 22.29 0.22 -1.16 16 10 C -0.05 -0.72 5.18 22.32 0.12 -0.60 16 11 Cl -0.08 -1.27 23.12 -2.72 -0.06 -1.33 16 12 C 0.52 12.20 7.15 87.66 0.63 12.83 16 13 O -0.58 -18.32 15.92 -3.03 -0.05 -18.37 16 14 N -0.71 -15.52 5.40 -463.06 -2.50 -18.01 16 15 C 0.10 2.55 5.31 86.38 0.46 3.01 16 16 C 0.11 3.20 3.09 30.60 0.09 3.30 16 17 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 18 O -0.56 -16.99 13.03 -148.98 -1.94 -18.93 16 19 C 0.12 4.60 5.92 86.38 0.51 5.12 16 20 N -0.74 -37.29 5.49 -343.46 -1.89 -39.18 16 21 C -0.25 -13.89 9.99 84.03 0.84 -13.05 16 22 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 23 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 24 N -0.97 -59.66 13.06 21.65 0.28 -59.38 16 25 Si 0.97 46.28 29.55 68.60 2.03 48.30 16 26 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 27 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 28 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 29 H 0.07 0.97 7.56 -2.39 -0.02 0.95 16 30 H 0.05 1.04 6.73 -2.38 -0.02 1.02 16 31 H 0.08 1.18 5.29 -2.38 -0.01 1.17 16 32 H 0.07 1.50 7.13 -2.39 -0.02 1.48 16 33 H 0.08 1.51 7.86 -2.39 -0.02 1.49 16 34 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 35 H 0.15 0.57 8.06 -2.91 -0.02 0.55 16 36 H 0.16 0.52 8.06 -2.91 -0.02 0.50 16 37 H 0.14 1.27 8.06 -2.91 -0.02 1.25 16 38 H 0.41 7.66 7.89 -92.71 -0.73 6.93 16 39 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.38 9.61 9.05 -74.06 -0.67 8.94 16 42 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 44 H 0.38 20.59 7.54 -92.71 -0.70 19.89 16 45 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 Total: -1.00 -72.25 383.77 -0.68 -72.93 By element: Atomic # 1 Polarization: 37.93 SS G_CDS: -1.07 Total: 36.86 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: 4.51 Total: -2.88 kcal Atomic # 7 Polarization: -112.48 SS G_CDS: -4.10 Total: -116.58 kcal Atomic # 8 Polarization: -35.31 SS G_CDS: -1.99 Total: -37.30 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 2.03 Total: 48.30 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.06 Total: -1.33 kcal Total: -72.25 -0.68 -72.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497063368.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.460 kcal (2) G-P(sol) polarization free energy of solvation -72.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.928 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds