Wall clock time and date at job start Wed Apr 1 2020 00:08:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 109.47221 * 2 1 4 4 C 1.50697 * 109.47002 * 120.00384 * 2 1 3 5 5 O 1.21283 * 120.00452 * 119.99869 * 4 2 1 6 6 N 1.34776 * 120.00123 * 299.99321 * 4 2 1 7 7 C 1.46503 * 119.99960 * 0.02562 * 6 4 2 8 8 C 1.46500 * 120.00379 * 180.02562 * 6 4 2 9 9 C 1.53000 * 109.47243 * 89.99919 * 8 6 4 10 10 N 1.46500 * 109.47243 * 179.97438 * 9 8 6 11 11 C 1.34770 * 119.99879 * 180.02562 * 10 9 8 12 12 O 1.21287 * 120.00245 * 0.02562 * 11 10 9 13 13 C 1.50705 * 120.00114 * 180.02562 * 11 10 9 14 14 S 1.80998 * 109.47291 * 179.97438 * 13 11 10 15 15 C 1.76201 * 99.99882 * 180.02562 * 14 13 11 16 16 H 1.07991 * 119.99990 * 0.02562 * 15 14 13 17 17 C 1.38804 * 119.99716 * 180.02562 * 15 14 13 18 18 N 1.31627 * 119.99405 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00030 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.47010 * 90.00027 * 19 17 15 21 21 H 1.48501 * 109.47179 * 209.99849 * 19 17 15 22 22 H 1.48496 * 109.47434 * 330.00198 * 19 17 15 23 23 C 1.50702 * 109.46980 * 239.99880 * 2 1 3 24 24 C 1.34512 * 125.79146 * 120.00056 * 23 2 1 25 25 C 1.41376 * 106.84688 * 179.75198 * 24 23 2 26 26 C 1.34517 * 106.83881 * 0.37683 * 25 24 23 27 27 O 1.34305 * 125.78962 * 299.98278 * 23 2 1 28 28 H 1.09005 * 109.46691 * 299.99819 * 1 2 3 29 29 H 1.09003 * 109.46908 * 59.99632 * 1 2 3 30 30 H 1.08993 * 109.47221 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47172 * 89.99544 * 7 6 4 32 32 H 1.08991 * 109.47477 * 209.99724 * 7 6 4 33 33 H 1.09001 * 109.46883 * 330.00088 * 7 6 4 34 34 H 1.09001 * 109.47088 * 210.00712 * 8 6 4 35 35 H 1.08998 * 109.46783 * 330.00193 * 8 6 4 36 36 H 1.09000 * 109.47352 * 300.00778 * 9 8 6 37 37 H 1.09001 * 109.46544 * 60.00196 * 9 8 6 38 38 H 0.96997 * 119.99907 * 0.02562 * 10 9 8 39 39 H 1.08993 * 109.46779 * 300.00367 * 13 11 10 40 40 H 1.08998 * 109.46703 * 59.99918 * 13 11 10 41 41 H 0.97009 * 119.99783 * 180.02562 * 18 17 15 42 42 H 1.08006 * 126.57585 * 359.97438 * 24 23 2 43 43 H 1.07998 * 126.58562 * 180.23597 * 25 24 23 44 44 H 1.08002 * 125.79423 * 179.89440 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 1.2304 5 8 2.7295 -1.6966 1.1192 6 7 1.7068 -0.2500 2.4545 7 6 0.8642 0.9409 2.5890 8 6 2.1955 -0.9404 3.6507 9 6 3.5432 -0.3475 4.0668 10 7 4.0317 -1.0374 5.2634 11 6 5.2090 -0.6804 5.8137 12 8 5.8639 0.2124 5.3186 13 6 5.7118 -1.3905 7.0442 14 16 7.3060 -0.6890 7.5365 15 6 7.6495 -1.6759 8.9552 16 1 6.9506 -2.4391 9.2642 17 6 8.8183 -1.4725 9.6757 18 7 9.0746 -2.2095 10.7357 19 14 10.0275 -0.1530 9.1408 20 1 9.6873 1.1296 9.8073 21 1 11.4040 -0.5592 9.5220 22 1 9.9524 0.0195 7.6678 23 6 2.0323 -0.7104 -1.2305 24 6 2.8089 -0.1721 -2.1878 25 6 3.0430 -1.1866 -3.1441 26 6 2.3885 -2.2820 -2.7183 27 8 1.7808 -1.9887 -1.5571 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 -0.1837 0.6427 2.6225 32 1 1.1219 1.4664 3.5085 33 1 1.0274 1.5996 1.7360 34 1 1.4776 -0.8152 4.4613 35 1 2.3170 -2.0016 3.4336 36 1 4.2611 -0.4727 3.2562 37 1 3.4218 0.7137 4.2839 38 1 3.5078 -1.7512 5.6595 39 1 4.9936 -1.2656 7.8545 40 1 5.8336 -2.4516 6.8270 41 1 9.8913 -2.0671 11.2395 42 1 3.1847 0.8400 -2.2180 43 1 3.6321 -1.0985 -4.0450 44 1 2.3605 -3.2368 -3.2223 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001527937726.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:08:45 Heat of formation + Delta-G solvation = -77.384427 kcal Electronic energy + Delta-G solvation = -26168.901876 eV Core-core repulsion = 22213.670659 eV Total energy + Delta-G solvation = -3955.231217 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -43.53677 -41.25922 -40.57697 -37.26040 -36.02626 -34.98865 -34.67749 -33.79192 -31.87239 -29.99523 -29.10243 -27.88248 -27.73708 -25.55746 -24.01066 -22.70957 -22.04934 -21.62847 -20.30249 -19.85418 -18.36669 -18.21513 -17.89804 -17.64646 -17.10959 -16.97626 -16.83077 -16.70827 -16.19876 -15.73085 -15.31629 -15.25260 -15.03182 -14.88335 -14.65840 -14.47646 -13.85963 -13.72481 -13.69767 -13.54762 -13.44381 -13.35932 -13.22490 -13.09831 -13.01745 -12.67133 -12.58495 -12.39605 -12.20855 -11.88231 -11.17755 -11.16039 -10.92354 -10.80588 -10.55094 -10.23833 -9.83226 -9.40968 -9.01116 -8.52260 -6.23296 0.76030 0.96412 1.30432 1.41384 1.47617 1.51163 1.53394 1.64658 1.84544 2.10478 2.24077 2.38512 2.72003 2.85830 3.41365 3.54245 3.76292 3.89177 3.92592 3.98650 4.06509 4.17528 4.22061 4.26441 4.34182 4.35999 4.45417 4.64257 4.68103 4.74218 4.78908 4.87498 4.90664 4.99334 4.99492 5.14905 5.23606 5.27763 5.45045 5.59938 5.70166 6.10893 6.21355 6.23268 6.39720 6.92836 7.02162 7.13662 8.60001 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020514 B = 0.001867 C = 0.001792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1364.568353 B =14991.837395 C =15617.358742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.024 4.024 3 H 0.153 0.847 4 C 0.509 3.491 5 O -0.576 6.576 6 N -0.608 5.608 7 C 0.058 3.942 8 C 0.112 3.888 9 C 0.113 3.887 10 N -0.709 5.709 11 C 0.535 3.465 12 O -0.564 6.564 13 C -0.110 4.110 14 S -0.178 6.178 15 C -0.528 4.528 16 H 0.064 0.936 17 C 0.045 3.955 18 N -0.916 5.916 19 Si 0.915 3.085 20 H -0.260 1.260 21 H -0.259 1.259 22 H -0.239 1.239 23 C -0.013 4.013 24 C -0.218 4.218 25 C -0.228 4.228 26 C -0.050 4.050 27 O -0.187 6.187 28 H 0.108 0.892 29 H 0.087 0.913 30 H 0.048 0.952 31 H 0.089 0.911 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.125 0.875 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.073 0.927 38 H 0.420 0.580 39 H 0.120 0.880 40 H 0.112 0.888 41 H 0.277 0.723 42 H 0.165 0.835 43 H 0.167 0.833 44 H 0.229 0.771 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.823 6.803 -25.691 37.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.045 4.045 3 H 0.171 0.829 4 C 0.298 3.702 5 O -0.454 6.454 6 N -0.340 5.340 7 C -0.083 4.083 8 C -0.011 4.011 9 C -0.012 4.012 10 N -0.364 5.364 11 C 0.321 3.679 12 O -0.442 6.442 13 C -0.261 4.261 14 S 0.048 5.952 15 C -0.676 4.676 16 H 0.082 0.918 17 C -0.161 4.161 18 N -0.554 5.554 19 Si 0.737 3.263 20 H -0.185 1.185 21 H -0.184 1.184 22 H -0.163 1.163 23 C -0.063 4.063 24 C -0.237 4.237 25 C -0.247 4.247 26 C -0.117 4.117 27 O -0.083 6.083 28 H 0.127 0.873 29 H 0.105 0.895 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.113 0.887 34 H 0.143 0.857 35 H 0.095 0.905 36 H 0.053 0.947 37 H 0.092 0.908 38 H 0.257 0.743 39 H 0.138 0.862 40 H 0.131 0.869 41 H 0.086 0.914 42 H 0.183 0.817 43 H 0.184 0.816 44 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -24.488 7.522 -26.245 36.675 hybrid contribution 0.318 -1.326 0.829 1.596 sum -24.170 6.196 -25.415 35.616 Atomic orbital electron populations 1.22097 0.89148 1.03406 1.06045 1.20037 0.99941 0.99581 0.84955 0.82945 1.21090 0.79410 0.84194 0.85556 1.90753 1.39337 1.28363 1.86967 1.47765 1.51254 1.30631 1.04355 1.22471 0.95012 0.85585 1.05202 1.21548 0.93977 0.97329 0.88278 1.21618 0.95990 0.97413 0.86198 1.45523 1.21235 1.39959 1.29647 1.20006 0.81052 0.82552 0.84306 1.90693 1.57551 1.32269 1.63724 1.23261 1.00040 1.03936 0.98872 1.84742 1.23813 1.51160 1.35455 1.22450 1.10130 1.22311 1.12690 0.91815 1.25570 0.98774 0.97815 0.93916 1.70016 1.27058 1.40393 1.17898 0.85861 0.79253 0.79750 0.81473 1.18484 1.18363 1.16306 1.22058 1.02902 0.82755 0.98593 1.21932 1.03150 1.02434 0.96224 1.22158 1.05736 0.93529 1.03293 1.24726 0.98591 1.02144 0.86249 1.84005 1.59873 1.28435 1.35980 0.87341 0.89456 0.93301 0.89263 0.89343 0.88658 0.85702 0.90529 0.94659 0.90847 0.74299 0.86192 0.86936 0.91357 0.81743 0.81567 0.75472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.81 71.98 0.63 -0.42 16 2 C -0.02 -0.32 2.33 -12.29 -0.03 -0.35 16 3 H 0.15 1.05 7.36 -2.39 -0.02 1.04 16 4 C 0.51 10.02 7.07 87.66 0.62 10.64 16 5 O -0.58 -17.80 15.38 3.51 0.05 -17.74 16 6 N -0.61 -7.96 2.87 -846.77 -2.43 -10.39 16 7 C 0.06 0.20 8.80 127.77 1.12 1.32 16 8 C 0.11 1.64 5.52 86.38 0.48 2.11 16 9 C 0.11 2.47 6.00 86.38 0.52 2.99 16 10 N -0.71 -16.92 5.56 -463.06 -2.57 -19.49 16 11 C 0.54 18.76 7.85 87.66 0.69 19.45 16 12 O -0.56 -24.85 15.86 -3.05 -0.05 -24.90 16 13 C -0.11 -4.16 6.16 71.24 0.44 -3.73 16 14 S -0.18 -9.12 18.55 -56.49 -1.05 -10.16 16 15 C -0.53 -30.94 10.04 67.96 0.68 -30.26 16 16 H 0.06 3.92 8.03 -2.92 -0.02 3.89 16 17 C 0.04 2.64 5.50 84.86 0.47 3.11 16 18 N -0.92 -56.00 13.97 21.65 0.30 -55.70 16 19 Si 0.91 45.43 27.74 68.60 1.90 47.33 16 20 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 21 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 22 H -0.24 -11.94 6.74 99.48 0.67 -11.27 16 23 C -0.01 -0.25 5.20 24.83 0.13 -0.12 16 24 C -0.22 -3.94 10.78 22.19 0.24 -3.70 16 25 C -0.23 -3.92 10.91 22.19 0.24 -3.68 16 26 C -0.05 -0.89 12.09 66.97 0.81 -0.08 16 27 O -0.19 -4.31 10.35 3.97 0.04 -4.27 16 28 H 0.11 0.13 4.53 -2.38 -0.01 0.12 16 29 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 30 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.09 -0.05 6.95 -2.39 -0.02 -0.07 16 32 H 0.09 0.20 8.07 -2.39 -0.02 0.18 16 33 H 0.09 0.00 6.01 -2.39 -0.01 -0.01 16 34 H 0.12 0.91 8.07 -2.39 -0.02 0.89 16 35 H 0.08 1.42 7.42 -2.39 -0.02 1.40 16 36 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 38 H 0.42 6.90 8.47 -92.71 -0.79 6.11 16 39 H 0.12 4.02 8.14 -2.40 -0.02 4.00 16 40 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 41 H 0.28 15.65 8.31 -92.70 -0.77 14.88 16 42 H 0.16 2.16 8.06 -2.91 -0.02 2.14 16 43 H 0.17 2.03 8.06 -2.91 -0.02 2.00 16 44 H 0.23 2.25 8.06 -2.91 -0.02 2.23 16 Total: -1.00 -89.70 384.53 3.44 -86.26 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: 0.20 Total: 11.77 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 7.04 Total: -2.70 kcal Atomic # 7 Polarization: -80.88 SS G_CDS: -4.70 Total: -85.58 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: 0.05 Total: -46.91 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.90 Total: 47.33 kcal Atomic # 16 Polarization: -9.12 SS G_CDS: -1.05 Total: -10.16 kcal Total: -89.70 3.44 -86.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001527937726.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.876 kcal (2) G-P(sol) polarization free energy of solvation -89.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds