Wall clock time and date at job start Wed Apr 1 2020 00:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.47046 * 2 1 4 4 C 1.53004 * 109.47002 * 120.00294 * 2 1 3 5 5 C 1.50701 * 109.46902 * 294.99928 * 4 2 1 6 6 C 1.38230 * 120.00960 * 264.72643 * 5 4 2 7 7 C 1.38214 * 120.01779 * 179.77027 * 6 5 4 8 8 C 1.38267 * 120.02585 * 0.50583 * 7 6 5 9 9 C 1.38195 * 120.00775 * 359.74659 * 8 7 6 10 10 C 1.38335 * 120.00682 * 84.99870 * 5 4 2 11 11 Cl 1.73599 * 120.01161 * 359.95628 * 10 5 4 12 12 C 1.50700 * 109.47130 * 240.00084 * 2 1 3 13 13 O 1.21280 * 120.00133 * 239.99962 * 12 2 1 14 14 N 1.34775 * 120.00028 * 59.99699 * 12 2 1 15 15 C 1.46502 * 119.99947 * 179.97438 * 14 12 2 16 16 C 1.53004 * 109.46925 * 180.02562 * 15 14 12 17 17 H 1.08995 * 109.47216 * 295.00133 * 16 15 14 18 18 C 1.52999 * 109.47083 * 175.00128 * 16 15 14 19 19 O 1.42898 * 109.47018 * 305.00136 * 18 16 15 20 20 N 1.46498 * 109.47065 * 55.00022 * 16 15 14 21 21 C 1.36943 * 119.99752 * 204.72207 * 20 16 15 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 16 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 16 24 24 N 1.31611 * 120.00081 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99814 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47483 * 90.00178 * 25 23 21 27 27 H 1.48498 * 109.47011 * 210.00042 * 25 23 21 28 28 H 1.48502 * 109.47495 * 329.99664 * 25 23 21 29 29 H 1.09005 * 109.47154 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47260 * 300.00047 * 1 2 3 31 31 H 1.08996 * 109.46957 * 59.99882 * 1 2 3 32 32 H 1.09001 * 109.46935 * 54.99850 * 4 2 1 33 33 H 1.08993 * 109.46913 * 175.00300 * 4 2 1 34 34 H 1.08000 * 119.99031 * 359.97438 * 6 5 4 35 35 H 1.08003 * 119.99105 * 180.27388 * 7 6 5 36 36 H 1.07998 * 119.99804 * 179.76826 * 8 7 6 37 37 H 1.08004 * 120.00128 * 180.02562 * 9 8 7 38 38 H 0.96997 * 119.99994 * 0.02562 * 14 12 2 39 39 H 1.08997 * 109.46993 * 60.00870 * 15 14 12 40 40 H 1.08999 * 109.47017 * 300.00291 * 15 14 12 41 41 H 1.09003 * 109.47083 * 65.00130 * 18 16 15 42 42 H 1.08995 * 109.47300 * 184.99893 * 18 16 15 43 43 H 0.96709 * 114.00043 * 179.97438 * 19 18 16 44 44 H 0.97001 * 120.00384 * 25.00562 * 20 16 15 45 45 H 0.97008 * 120.00329 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 6 2.5261 0.9552 3.0433 7 6 2.1589 1.6725 4.1662 8 6 0.9102 1.4846 4.7295 9 6 0.0268 0.5831 4.1669 10 6 0.3919 -0.1315 3.0397 11 17 -0.7176 -1.2637 2.3320 12 6 2.0324 -0.7104 -1.2305 13 8 2.7297 -1.6965 -1.1192 14 7 1.7068 -0.2500 -2.4546 15 6 2.1956 -0.9402 -3.6507 16 6 1.6859 -0.2187 -4.9000 17 1 0.5997 -0.2956 -4.9463 18 6 2.2964 -0.8633 -6.1460 19 8 3.7208 -0.8668 -6.0312 20 7 2.0733 1.1929 -4.8408 21 6 1.3492 2.1310 -5.5270 22 1 0.4898 1.8307 -6.1082 23 6 1.7196 3.4678 -5.4756 24 7 1.0234 4.3694 -6.1346 25 14 3.2065 3.9869 -4.4710 26 1 4.4212 3.9401 -5.3239 27 1 3.0066 5.3704 -3.9697 28 1 3.3737 3.0630 -3.3204 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 1.6054 -1.7199 1.2951 33 1 3.1263 -0.7995 1.2056 34 1 3.5034 1.0988 2.6066 35 1 2.8488 2.3775 4.6060 36 1 0.6251 2.0427 5.6091 37 1 -0.9487 0.4367 4.6067 38 1 1.1494 0.5389 -2.5435 39 1 1.8326 -1.9680 -3.6509 40 1 3.2856 -0.9398 -3.6505 41 1 1.9368 -1.8882 -6.2381 42 1 2.0045 -0.2952 -7.0292 43 1 4.1754 -1.2621 -6.7877 44 1 2.8452 1.4626 -4.3189 45 1 1.2820 5.3037 -6.0984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001571442027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:11 Heat of formation + Delta-G solvation = -60.755202 kcal Electronic energy + Delta-G solvation = -27346.907006 eV Core-core repulsion = 23390.353180 eV Total energy + Delta-G solvation = -3956.553826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.19499 -39.28481 -37.31574 -36.67483 -35.16811 -34.87088 -33.56724 -31.71130 -31.16777 -30.78745 -28.85330 -26.87890 -25.62951 -23.67110 -23.17355 -22.81699 -21.28163 -20.18253 -19.50926 -17.93334 -17.43640 -16.90490 -16.72282 -16.04697 -15.90485 -15.45267 -15.14479 -14.92509 -14.41858 -14.20043 -14.08485 -13.72726 -13.57358 -13.49669 -13.04459 -12.92353 -12.79551 -12.62899 -12.33111 -12.31370 -11.85551 -11.69967 -11.62242 -11.51580 -11.15943 -11.04726 -10.99487 -10.87760 -10.70720 -10.42916 -10.14134 -9.67111 -9.57209 -9.44252 -9.15968 -9.01914 -8.85895 -8.66708 -7.36911 -5.85028 -3.21333 0.87197 0.97568 1.93103 2.90920 3.29212 3.33994 3.39954 3.43043 3.54974 4.44927 4.49443 4.53614 4.68371 4.79692 4.80538 4.90254 5.00308 5.06910 5.12029 5.21018 5.33211 5.38815 5.43384 5.45641 5.56015 5.66842 5.76777 5.80757 5.84134 5.91351 5.92930 5.94263 6.09310 6.10956 6.15824 6.23751 6.27159 6.37840 6.51722 6.61511 6.83108 7.87074 7.88694 8.09771 8.33889 8.52116 9.11990 9.84608 10.04804 11.32666 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012241 B = 0.003081 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.897919 B = 9084.646432 C =10136.398350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.104 4.104 3 H 0.097 0.903 4 C -0.066 4.066 5 C -0.067 4.067 6 C -0.105 4.105 7 C -0.113 4.113 8 C -0.115 4.115 9 C -0.110 4.110 10 C -0.033 4.033 11 Cl -0.063 7.063 12 C 0.516 3.484 13 O -0.552 6.552 14 N -0.715 5.715 15 C 0.115 3.885 16 C 0.171 3.829 17 H 0.074 0.926 18 C 0.059 3.941 19 O -0.565 6.565 20 N -0.738 5.738 21 C -0.251 4.251 22 H 0.091 0.909 23 C 0.011 3.989 24 N -0.931 5.931 25 Si 0.884 3.116 26 H -0.284 1.284 27 H -0.292 1.292 28 H -0.277 1.277 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.128 0.872 36 H 0.130 0.870 37 H 0.132 0.868 38 H 0.409 0.591 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.031 0.969 42 H 0.054 0.946 43 H 0.366 0.634 44 H 0.366 0.634 45 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.071 -9.662 19.196 21.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.125 4.125 3 H 0.116 0.884 4 C -0.103 4.103 5 C -0.067 4.067 6 C -0.123 4.123 7 C -0.131 4.131 8 C -0.133 4.133 9 C -0.129 4.129 10 C -0.060 4.060 11 Cl -0.034 7.034 12 C 0.302 3.698 13 O -0.431 6.431 14 N -0.367 5.367 15 C -0.009 4.009 16 C 0.061 3.939 17 H 0.092 0.908 18 C -0.022 4.022 19 O -0.369 6.369 20 N -0.382 5.382 21 C -0.380 4.380 22 H 0.108 0.892 23 C -0.186 4.186 24 N -0.578 5.578 25 Si 0.714 3.286 26 H -0.210 1.210 27 H -0.218 1.218 28 H -0.203 1.203 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.080 0.920 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.150 0.850 35 H 0.146 0.854 36 H 0.148 0.852 37 H 0.150 0.850 38 H 0.245 0.755 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.049 0.951 42 H 0.072 0.928 43 H 0.211 0.789 44 H 0.199 0.801 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.014 -10.035 19.619 22.060 hybrid contribution 0.800 0.648 -0.180 1.045 sum -0.214 -9.387 19.439 21.588 Atomic orbital electron populations 1.22232 0.92631 1.02915 1.02963 1.21243 0.98048 1.00820 0.92398 0.88450 1.20472 1.02452 0.98490 0.88915 1.19827 0.92256 0.97498 0.97156 1.21113 0.99649 0.95535 0.95987 1.21266 0.96645 0.99226 0.95970 1.21108 0.93810 0.98175 1.00225 1.21059 1.00551 0.96435 0.94841 1.20851 0.91910 0.96486 0.96743 1.98373 1.61873 1.60135 1.83023 1.20469 0.80099 0.84532 0.84727 1.90660 1.38607 1.26787 1.87056 1.46036 1.53154 1.32213 1.05292 1.21582 1.00262 0.95226 0.83816 1.20567 0.97484 0.85222 0.90632 0.90832 1.22996 0.80931 0.97499 1.00787 1.86520 1.19118 1.84908 1.46320 1.42728 1.34512 1.01461 1.59451 1.19049 1.08607 0.86969 1.23390 0.89168 1.24634 0.98439 0.95753 0.99750 1.69697 1.41045 1.01298 1.45719 0.86567 0.83916 0.77564 0.80518 1.21047 1.21838 1.20303 0.91645 0.91208 0.91985 0.89505 0.89666 0.84970 0.85405 0.85241 0.85021 0.75484 0.91787 0.90723 0.95124 0.92780 0.78877 0.80086 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 7.32 37.16 0.27 -1.50 16 2 C -0.10 -1.33 2.71 -91.77 -0.25 -1.58 16 3 H 0.10 1.21 8.14 -51.93 -0.42 0.79 16 4 C -0.07 -0.79 3.97 -27.88 -0.11 -0.90 16 5 C -0.07 -0.71 4.86 -104.59 -0.51 -1.22 16 6 C -0.10 -0.98 9.68 -39.59 -0.38 -1.37 16 7 C -0.11 -0.91 10.05 -39.58 -0.40 -1.31 16 8 C -0.11 -0.89 10.05 -39.59 -0.40 -1.29 16 9 C -0.11 -0.96 9.83 -39.55 -0.39 -1.35 16 10 C -0.03 -0.34 5.18 -39.50 -0.20 -0.55 16 11 Cl -0.06 -0.65 23.12 -51.86 -1.20 -1.85 16 12 C 0.52 8.25 7.15 -10.99 -0.08 8.17 16 13 O -0.55 -10.37 15.92 5.56 0.09 -10.29 16 14 N -0.72 -11.63 5.28 -60.29 -0.32 -11.95 16 15 C 0.12 1.95 5.12 -4.04 -0.02 1.93 16 16 C 0.17 3.11 2.84 -67.93 -0.19 2.92 16 17 H 0.07 1.30 8.08 -51.93 -0.42 0.88 16 18 C 0.06 0.98 6.85 37.16 0.25 1.23 16 19 O -0.56 -9.44 12.64 -35.23 -0.45 -9.89 16 20 N -0.74 -16.49 4.31 -53.43 -0.23 -16.72 16 21 C -0.25 -6.64 10.41 -15.06 -0.16 -6.80 16 22 H 0.09 2.54 8.06 -52.49 -0.42 2.12 16 23 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 24 N -0.93 -28.23 13.97 55.49 0.78 -27.46 16 25 Si 0.88 21.82 27.74 -169.99 -4.71 17.11 16 26 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 27 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 28 H -0.28 -6.47 6.52 56.52 0.37 -6.10 16 29 H 0.06 0.78 6.73 -51.93 -0.35 0.43 16 30 H 0.07 0.78 5.29 -51.93 -0.27 0.51 16 31 H 0.06 0.73 7.56 -51.93 -0.39 0.34 16 32 H 0.09 1.10 7.13 -51.93 -0.37 0.73 16 33 H 0.08 1.05 7.86 -51.93 -0.41 0.64 16 34 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 35 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 36 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 37 H 0.13 0.92 8.06 -52.48 -0.42 0.50 16 38 H 0.41 6.63 7.56 -40.82 -0.31 6.32 16 39 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.07 1.41 7.39 -51.93 -0.38 1.02 16 41 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.37 4.35 9.12 45.56 0.42 4.76 16 44 H 0.37 8.48 5.66 -40.82 -0.23 8.25 16 45 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 378.78 15.07 5.71 5.71 Total: -1.00 -32.83 378.78 -8.69 -41.52 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -5.70 Total: 17.20 kcal Atomic # 6 Polarization: -0.72 SS G_CDS: -2.66 Total: -3.38 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: 0.23 Total: -56.13 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.36 Total: -20.17 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.11 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -1.20 Total: -1.85 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.83 -8.69 -41.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571442027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.237 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds