Wall clock time and date at job start Wed Apr 1 2020 00:10:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08992 * 109.47046 * 2 1 4 4 C 1.53004 * 109.47002 * 120.00294 * 2 1 3 5 5 C 1.50701 * 109.46902 * 294.99928 * 4 2 1 6 6 C 1.38230 * 120.00960 * 264.72643 * 5 4 2 7 7 C 1.38214 * 120.01779 * 179.77027 * 6 5 4 8 8 C 1.38267 * 120.02585 * 0.50583 * 7 6 5 9 9 C 1.38195 * 120.00775 * 359.74659 * 8 7 6 10 10 C 1.38335 * 120.00682 * 84.99870 * 5 4 2 11 11 Cl 1.73599 * 120.01161 * 359.95628 * 10 5 4 12 12 C 1.50700 * 109.47130 * 240.00084 * 2 1 3 13 13 O 1.21280 * 120.00133 * 239.99962 * 12 2 1 14 14 N 1.34775 * 120.00028 * 59.99699 * 12 2 1 15 15 C 1.46502 * 119.99947 * 179.97438 * 14 12 2 16 16 C 1.53004 * 109.46925 * 180.02562 * 15 14 12 17 17 H 1.08995 * 109.47216 * 295.00133 * 16 15 14 18 18 C 1.52999 * 109.47083 * 175.00128 * 16 15 14 19 19 O 1.42898 * 109.47018 * 305.00136 * 18 16 15 20 20 N 1.46498 * 109.47065 * 55.00022 * 16 15 14 21 21 C 1.36943 * 119.99752 * 204.72207 * 20 16 15 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 16 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 16 24 24 N 1.31611 * 120.00081 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99814 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47483 * 90.00178 * 25 23 21 27 27 H 1.48498 * 109.47011 * 210.00042 * 25 23 21 28 28 H 1.48502 * 109.47495 * 329.99664 * 25 23 21 29 29 H 1.09005 * 109.47154 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47260 * 300.00047 * 1 2 3 31 31 H 1.08996 * 109.46957 * 59.99882 * 1 2 3 32 32 H 1.09001 * 109.46935 * 54.99850 * 4 2 1 33 33 H 1.08993 * 109.46913 * 175.00300 * 4 2 1 34 34 H 1.08000 * 119.99031 * 359.97438 * 6 5 4 35 35 H 1.08003 * 119.99105 * 180.27388 * 7 6 5 36 36 H 1.07998 * 119.99804 * 179.76826 * 8 7 6 37 37 H 1.08004 * 120.00128 * 180.02562 * 9 8 7 38 38 H 0.96997 * 119.99994 * 0.02562 * 14 12 2 39 39 H 1.08997 * 109.46993 * 60.00870 * 15 14 12 40 40 H 1.08999 * 109.47017 * 300.00291 * 15 14 12 41 41 H 1.09003 * 109.47083 * 65.00130 * 18 16 15 42 42 H 1.08995 * 109.47300 * 184.99893 * 18 16 15 43 43 H 0.96709 * 114.00043 * 179.97438 * 19 18 16 44 44 H 0.97001 * 120.00384 * 25.00562 * 20 16 15 45 45 H 0.97008 * 120.00329 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 6 2.5261 0.9552 3.0433 7 6 2.1589 1.6725 4.1662 8 6 0.9102 1.4846 4.7295 9 6 0.0268 0.5831 4.1669 10 6 0.3919 -0.1315 3.0397 11 17 -0.7176 -1.2637 2.3320 12 6 2.0324 -0.7104 -1.2305 13 8 2.7297 -1.6965 -1.1192 14 7 1.7068 -0.2500 -2.4546 15 6 2.1956 -0.9402 -3.6507 16 6 1.6859 -0.2187 -4.9000 17 1 0.5997 -0.2956 -4.9463 18 6 2.2964 -0.8633 -6.1460 19 8 3.7208 -0.8668 -6.0312 20 7 2.0733 1.1929 -4.8408 21 6 1.3492 2.1310 -5.5270 22 1 0.4898 1.8307 -6.1082 23 6 1.7196 3.4678 -5.4756 24 7 1.0234 4.3694 -6.1346 25 14 3.2065 3.9869 -4.4710 26 1 4.4212 3.9401 -5.3239 27 1 3.0066 5.3704 -3.9697 28 1 3.3737 3.0630 -3.3204 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 1.6054 -1.7199 1.2951 33 1 3.1263 -0.7995 1.2056 34 1 3.5034 1.0988 2.6066 35 1 2.8488 2.3775 4.6060 36 1 0.6251 2.0427 5.6091 37 1 -0.9487 0.4367 4.6067 38 1 1.1494 0.5389 -2.5435 39 1 1.8326 -1.9680 -3.6509 40 1 3.2856 -0.9398 -3.6505 41 1 1.9368 -1.8882 -6.2381 42 1 2.0045 -0.2952 -7.0292 43 1 4.1754 -1.2621 -6.7877 44 1 2.8452 1.4626 -4.3189 45 1 1.2820 5.3037 -6.0984 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571442027.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:11 Heat of formation + Delta-G solvation = -83.885104 kcal Electronic energy + Delta-G solvation = -27347.909994 eV Core-core repulsion = 23390.353180 eV Total energy + Delta-G solvation = -3957.556814 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.23324 -40.24665 -38.74758 -37.41901 -36.48551 -35.97056 -35.24391 -33.42371 -32.07872 -31.56360 -30.48048 -27.75442 -26.91430 -25.35800 -24.41180 -23.53348 -22.14787 -21.70892 -20.74941 -19.80080 -18.36124 -18.28781 -17.73556 -17.30090 -16.85024 -16.57036 -16.24704 -16.18812 -15.96992 -15.25800 -15.03959 -14.92219 -14.85126 -14.71586 -14.54000 -14.35273 -13.99054 -13.81734 -13.47256 -13.25356 -13.16729 -12.83651 -12.69023 -12.61670 -12.47873 -12.40560 -12.32237 -11.95116 -11.91944 -11.87585 -11.78182 -11.26362 -11.08617 -10.78419 -10.72542 -10.02973 -9.84612 -9.58104 -9.33329 -8.00932 -5.33454 0.19314 0.31071 1.19867 1.37493 1.41669 1.46720 1.63410 2.23616 2.48671 2.69309 3.30924 3.44522 3.57087 3.69320 3.75798 3.82869 3.92539 4.00410 4.04223 4.18281 4.35000 4.38903 4.40199 4.46092 4.52306 4.60405 4.68597 4.74004 4.80186 4.82286 4.89221 4.97300 5.00164 5.14032 5.16733 5.24447 5.30892 5.46632 5.49105 5.51418 5.78261 5.88979 6.22449 6.56479 7.01807 7.08815 7.22842 7.83227 8.02533 9.20006 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012241 B = 0.003081 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2286.897919 B = 9084.646432 C =10136.398350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.104 0.896 4 C -0.058 4.058 5 C -0.082 4.082 6 C -0.115 4.115 7 C -0.114 4.114 8 C -0.111 4.111 9 C -0.116 4.116 10 C -0.046 4.046 11 Cl -0.072 7.072 12 C 0.515 3.485 13 O -0.581 6.581 14 N -0.716 5.716 15 C 0.127 3.873 16 C 0.166 3.834 17 H 0.080 0.920 18 C 0.065 3.935 19 O -0.583 6.583 20 N -0.740 5.740 21 C -0.223 4.223 22 H 0.067 0.933 23 C -0.053 4.053 24 N -0.979 5.979 25 Si 0.944 3.056 26 H -0.290 1.290 27 H -0.297 1.297 28 H -0.256 1.256 29 H 0.062 0.938 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.139 0.861 35 H 0.152 0.848 36 H 0.158 0.842 37 H 0.147 0.853 38 H 0.410 0.590 39 H 0.079 0.921 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.035 0.965 43 H 0.388 0.612 44 H 0.363 0.637 45 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.601 -10.043 21.193 23.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 H 0.122 0.878 4 C -0.096 4.096 5 C -0.083 4.083 6 C -0.133 4.133 7 C -0.131 4.131 8 C -0.129 4.129 9 C -0.134 4.134 10 C -0.073 4.073 11 Cl -0.043 7.043 12 C 0.303 3.697 13 O -0.462 6.462 14 N -0.367 5.367 15 C 0.002 3.998 16 C 0.057 3.943 17 H 0.098 0.902 18 C -0.016 4.016 19 O -0.390 6.390 20 N -0.383 5.383 21 C -0.353 4.353 22 H 0.085 0.915 23 C -0.245 4.245 24 N -0.630 5.630 25 Si 0.774 3.226 26 H -0.217 1.217 27 H -0.223 1.223 28 H -0.181 1.181 29 H 0.081 0.919 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.094 0.906 33 H 0.095 0.905 34 H 0.157 0.843 35 H 0.170 0.830 36 H 0.175 0.825 37 H 0.165 0.835 38 H 0.246 0.754 39 H 0.097 0.903 40 H 0.076 0.924 41 H 0.086 0.914 42 H 0.053 0.947 43 H 0.236 0.764 44 H 0.196 0.804 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.535 -10.480 21.623 24.035 hybrid contribution 0.632 0.660 -0.801 1.215 sum 0.097 -9.821 20.822 23.022 Atomic orbital electron populations 1.22189 0.91751 1.02860 1.03269 1.21243 0.98636 1.00728 0.91246 0.87771 1.20332 1.01752 0.98121 0.89352 1.19745 0.92998 0.98429 0.97128 1.21304 0.99830 0.95534 0.96628 1.21591 0.97251 0.99023 0.95275 1.21487 0.93294 0.97479 1.00645 1.21330 1.01528 0.96257 0.94327 1.20992 0.91788 0.96943 0.97544 1.98366 1.62103 1.60575 1.83273 1.20988 0.79333 0.84124 0.85299 1.90643 1.39935 1.28169 1.87450 1.46067 1.53070 1.32187 1.05379 1.21416 0.99161 0.95808 0.83377 1.20808 0.98081 0.83156 0.92210 0.90243 1.22801 0.81152 0.99085 0.98527 1.86462 1.19135 1.85475 1.47945 1.42692 1.33956 1.02687 1.58940 1.19018 1.07311 0.87551 1.21470 0.91507 1.25277 1.01409 0.96060 1.01728 1.69847 1.43313 1.01457 1.48370 0.85574 0.80272 0.77168 0.79628 1.21747 1.22338 1.18109 0.91911 0.90404 0.92078 0.90647 0.90452 0.84312 0.83048 0.82472 0.83544 0.75380 0.90293 0.92364 0.91391 0.94666 0.76372 0.80377 0.93460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 7.32 71.98 0.53 -2.72 16 2 C -0.10 -2.42 2.71 -11.54 -0.03 -2.45 16 3 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 4 C -0.06 -1.36 3.97 29.85 0.12 -1.24 16 5 C -0.08 -1.66 4.86 -19.84 -0.10 -1.76 16 6 C -0.11 -1.97 9.68 22.26 0.22 -1.75 16 7 C -0.11 -1.52 10.05 22.27 0.22 -1.29 16 8 C -0.11 -1.38 10.05 22.27 0.22 -1.16 16 9 C -0.12 -1.76 9.83 22.29 0.22 -1.55 16 10 C -0.05 -0.89 5.18 22.32 0.12 -0.77 16 11 Cl -0.07 -1.44 23.12 -2.72 -0.06 -1.50 16 12 C 0.52 16.06 7.15 87.66 0.63 16.69 16 13 O -0.58 -21.55 15.92 -3.03 -0.05 -21.60 16 14 N -0.72 -22.43 5.28 -463.06 -2.45 -24.87 16 15 C 0.13 4.10 5.12 86.38 0.44 4.54 16 16 C 0.17 5.78 2.84 44.99 0.13 5.91 16 17 H 0.08 2.69 8.08 -2.39 -0.02 2.67 16 18 C 0.07 2.03 6.85 71.98 0.49 2.52 16 19 O -0.58 -18.31 12.64 -148.98 -1.88 -20.19 16 20 N -0.74 -32.26 4.31 -322.94 -1.39 -33.65 16 21 C -0.22 -11.80 10.41 84.03 0.87 -10.92 16 22 H 0.07 3.82 8.06 -2.91 -0.02 3.80 16 23 C -0.05 -2.98 5.50 84.86 0.47 -2.51 16 24 N -0.98 -60.53 13.97 21.65 0.30 -60.23 16 25 Si 0.94 45.08 27.74 68.60 1.90 46.98 16 26 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 27 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 28 H -0.26 -11.17 6.52 99.48 0.65 -10.53 16 29 H 0.06 1.45 6.73 -2.38 -0.02 1.44 16 30 H 0.08 1.66 5.29 -2.39 -0.01 1.64 16 31 H 0.06 1.38 7.56 -2.39 -0.02 1.36 16 32 H 0.07 1.92 7.13 -2.39 -0.02 1.90 16 33 H 0.08 1.90 7.86 -2.39 -0.02 1.88 16 34 H 0.14 2.09 8.06 -2.91 -0.02 2.07 16 35 H 0.15 1.26 8.06 -2.91 -0.02 1.24 16 36 H 0.16 1.05 8.06 -2.91 -0.02 1.02 16 37 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.41 12.80 7.56 -92.71 -0.70 12.10 16 39 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.06 2.11 7.39 -2.39 -0.02 2.09 16 41 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.39 8.33 9.12 -74.05 -0.68 7.65 16 44 H 0.36 16.27 5.66 -92.71 -0.52 15.75 16 45 H 0.26 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -70.63 378.78 0.00 -70.64 By element: Atomic # 1 Polarization: 43.82 SS G_CDS: -0.92 Total: 42.90 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: 4.55 Total: 1.53 kcal Atomic # 7 Polarization: -115.22 SS G_CDS: -3.54 Total: -118.75 kcal Atomic # 8 Polarization: -39.86 SS G_CDS: -1.93 Total: -41.79 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.90 Total: 46.98 kcal Atomic # 17 Polarization: -1.44 SS G_CDS: -0.06 Total: -1.50 kcal Total: -70.63 0.00 -70.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571442027.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.250 kcal (2) G-P(sol) polarization free energy of solvation -70.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds