Wall clock time and date at job start Wed Apr 1 2020 00:02:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08993 * 110.78630 * 2 1 4 4 C 1.55160 * 110.71857 * 236.75437 * 2 1 3 5 5 C 1.55130 * 101.48583 * 205.97441 * 4 2 1 6 6 N 1.47422 * 104.72314 * 37.29863 * 5 4 2 7 7 S 1.65596 * 125.64805 * 155.81529 * 6 5 4 8 8 O 1.42108 * 106.39966 * 156.15291 * 7 6 5 9 9 O 1.42105 * 106.40227 * 23.23333 * 7 6 5 10 10 N 1.65592 * 107.21892 * 269.69190 * 7 6 5 11 11 C 1.46503 * 120.00260 * 65.27845 * 10 7 6 12 12 C 1.50693 * 109.47329 * 164.72198 * 11 10 7 13 13 C 1.38326 * 119.96448 * 90.00093 * 12 11 10 14 14 C 1.38279 * 120.14040 * 179.97438 * 13 12 11 15 15 C 1.38128 * 120.06485 * 359.97438 * 14 13 12 16 16 C 1.38852 * 119.93363 * 0.02562 * 15 14 13 17 17 O 1.35745 * 120.07182 * 180.02562 * 16 15 14 18 18 C 1.34836 * 116.99732 * 354.46037 * 17 16 15 19 19 H 1.07990 * 120.00115 * 5.05555 * 18 17 16 20 20 C 1.38660 * 119.99732 * 185.06143 * 18 17 16 21 21 N 1.31560 * 120.00189 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99820 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46897 * 89.99475 * 22 20 18 24 24 H 1.48497 * 109.47090 * 209.99479 * 22 20 18 25 25 H 1.48501 * 109.47211 * 329.99867 * 22 20 18 26 26 C 1.38075 * 119.96788 * 269.72639 * 12 11 10 27 27 C 1.47023 * 108.70133 * 335.55156 * 6 5 4 28 28 H 1.08999 * 109.47225 * 296.76623 * 1 2 3 29 29 H 1.09008 * 109.46947 * 56.76091 * 1 2 3 30 30 H 1.08991 * 109.47505 * 176.75922 * 1 2 3 31 31 H 1.08998 * 111.00944 * 324.21670 * 4 2 1 32 32 H 1.09001 * 111.00011 * 88.02622 * 4 2 1 33 33 H 1.09001 * 110.49358 * 278.45845 * 5 4 2 34 34 H 1.09003 * 110.34223 * 156.06347 * 5 4 2 35 35 H 0.97002 * 120.00433 * 244.99910 * 10 7 6 36 36 H 1.08997 * 109.46624 * 284.72721 * 11 10 7 37 37 H 1.09005 * 109.46735 * 44.72064 * 11 10 7 38 38 H 1.08004 * 119.93337 * 0.02562 * 13 12 11 39 39 H 1.07995 * 119.97047 * 179.97438 * 14 13 12 40 40 H 1.08006 * 120.02974 * 180.02562 * 15 14 13 41 41 H 0.96993 * 119.99635 * 180.02562 * 21 20 18 42 42 H 1.08007 * 120.03275 * 359.97438 * 26 12 11 43 43 H 1.09004 * 109.87882 * 120.70521 * 27 6 5 44 44 H 1.08996 * 109.88386 * 241.86755 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9168 1.0190 0.0000 4 6 2.0789 -0.7956 -1.2137 5 6 3.4665 -1.2458 -0.6860 6 7 3.2444 -1.5509 0.7391 7 16 4.1631 -2.5743 1.6616 8 8 3.9853 -2.1665 3.0112 9 8 5.4354 -2.6480 1.0330 10 7 3.4917 -4.0828 1.5366 11 6 3.4883 -4.7787 0.2474 12 6 3.1784 -6.2373 0.4647 13 6 1.8666 -6.6756 0.4429 14 6 1.5781 -8.0133 0.6413 15 6 2.5999 -8.9163 0.8614 16 6 3.9177 -8.4795 0.8839 17 8 4.9241 -9.3647 1.0995 18 6 4.5716 -10.6313 1.3985 19 1 3.5317 -10.9218 1.3772 20 6 5.5444 -11.5609 1.7333 21 7 6.8113 -11.2072 1.7588 22 14 5.0560 -13.3156 2.1483 23 1 5.0525 -14.1345 0.9095 24 1 6.0289 -13.8847 3.1151 25 1 3.6984 -13.3224 2.7500 26 6 4.2045 -7.1359 0.6797 27 6 2.0759 -0.7912 1.2073 28 1 -0.3633 0.4628 0.9175 29 1 -0.3633 0.5633 -0.8596 30 1 -0.3634 -1.0259 -0.0581 31 1 1.4451 -1.6537 -1.4375 32 1 2.1843 -0.1522 -2.0872 33 1 4.1946 -0.4417 -0.7928 34 1 3.8030 -2.1365 -1.2167 35 1 3.1042 -4.5075 2.3179 36 1 2.7306 -4.3388 -0.4009 37 1 4.4680 -4.6811 -0.2206 38 1 1.0660 -5.9716 0.2697 39 1 0.5529 -8.3524 0.6241 40 1 2.3739 -9.9611 1.0159 41 1 7.4917 -11.8576 1.9927 42 1 5.2289 -6.7938 0.6917 43 1 1.3128 -1.4759 1.5776 44 1 2.3740 -0.1025 1.9977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647135616.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:11 Heat of formation + Delta-G solvation = -107.980674 kcal Electronic energy + Delta-G solvation = -27178.434684 eV Core-core repulsion = 23221.876713 eV Total energy + Delta-G solvation = -3956.557970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.83635 -39.56826 -38.70102 -38.38497 -37.04992 -36.02079 -34.28799 -33.43041 -31.88489 -30.66719 -30.39831 -27.50940 -26.91176 -26.44438 -23.32343 -23.25585 -22.48633 -21.19748 -20.52424 -19.68349 -19.07904 -18.92246 -18.30630 -17.32736 -16.97939 -16.69190 -16.49456 -16.10305 -15.84281 -15.52476 -15.07354 -14.88216 -14.71466 -14.58643 -14.44176 -14.11510 -13.97124 -13.81216 -13.54646 -13.50591 -13.40779 -13.35697 -13.26288 -12.95693 -12.90301 -12.46941 -12.36398 -12.29403 -12.23058 -12.12148 -11.82662 -11.57139 -11.43681 -11.20110 -10.82115 -10.59356 -10.06431 -9.73888 -9.02179 -8.47862 -6.16778 -0.58438 0.46867 0.72714 1.34183 1.43705 1.52052 1.90577 2.16755 2.49245 2.83122 3.11282 3.19047 3.40174 3.61431 3.78953 3.82086 4.02794 4.09395 4.29475 4.33544 4.37550 4.44295 4.52633 4.55255 4.60289 4.67300 4.74139 4.79304 4.85281 4.93329 4.98789 5.04933 5.11292 5.15372 5.23013 5.24273 5.27271 5.32974 5.46859 5.57163 5.64142 5.71481 5.72937 5.98568 6.01902 6.20386 6.96710 7.78238 8.75571 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021488 B = 0.002422 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.746378 B =11559.508407 C =12244.135368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.096 4.096 3 H 0.090 0.910 4 C -0.119 4.119 5 C 0.106 3.894 6 N -1.016 6.016 7 S 2.820 3.180 8 O -1.007 7.007 9 O -1.008 7.008 10 N -1.117 6.117 11 C 0.169 3.831 12 C -0.054 4.054 13 C -0.166 4.166 14 C -0.071 4.071 15 C -0.238 4.238 16 C 0.109 3.891 17 O -0.235 6.235 18 C -0.413 4.413 19 H 0.104 0.896 20 C -0.026 4.026 21 N -0.923 5.923 22 Si 1.020 2.980 23 H -0.262 1.262 24 H -0.273 1.273 25 H -0.251 1.251 26 C -0.190 4.190 27 C 0.114 3.886 28 H 0.059 0.941 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.422 0.578 36 H 0.112 0.888 37 H 0.075 0.925 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.119 0.881 41 H 0.272 0.728 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.244 22.089 -6.656 28.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.116 4.116 3 H 0.108 0.892 4 C -0.158 4.158 5 C -0.018 4.018 6 N -0.858 5.858 7 S 2.829 3.171 8 O -0.991 6.991 9 O -0.991 6.991 10 N -0.879 5.879 11 C 0.044 3.956 12 C -0.055 4.055 13 C -0.185 4.185 14 C -0.089 4.089 15 C -0.257 4.257 16 C 0.059 3.941 17 O -0.142 6.142 18 C -0.489 4.489 19 H 0.121 0.879 20 C -0.223 4.223 21 N -0.561 5.561 22 Si 0.839 3.161 23 H -0.187 1.187 24 H -0.198 1.198 25 H -0.175 1.175 26 C -0.210 4.210 27 C -0.011 4.011 28 H 0.078 0.922 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.105 0.895 32 H 0.118 0.882 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.257 0.743 36 H 0.130 0.870 37 H 0.093 0.907 38 H 0.176 0.824 39 H 0.168 0.832 40 H 0.136 0.864 41 H 0.081 0.919 42 H 0.120 0.880 43 H 0.094 0.906 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.866 22.317 -6.214 28.078 hybrid contribution 0.277 -1.475 0.646 1.634 sum -15.589 20.842 -5.568 26.616 Atomic orbital electron populations 1.21754 0.92834 1.02597 1.02648 1.22233 0.96910 0.99338 0.93156 0.89200 1.22943 0.94057 1.00907 0.97852 1.22338 0.99382 1.01502 0.78603 1.58772 1.45198 1.58919 1.22931 1.00544 0.72656 0.72271 0.71615 1.93568 1.87014 1.82212 1.36306 1.93582 1.40350 1.86977 1.78192 1.55806 1.79016 1.34857 1.18209 1.20211 1.03114 0.87986 0.84286 1.19514 0.92857 0.94051 0.99125 1.21053 0.95482 0.95885 1.06059 1.21203 0.98732 0.93072 0.95867 1.21372 0.92417 1.01290 1.10631 1.19902 0.88899 0.90666 0.94621 1.83952 1.31839 1.19922 1.78521 1.21836 0.95547 0.83422 1.48061 0.87873 1.26634 0.94461 1.04970 0.96215 1.70198 1.01322 1.37222 1.47367 0.84569 0.78817 0.73990 0.78714 1.18696 1.19824 1.17487 1.20313 0.99766 0.90488 1.10432 1.22041 0.86259 0.94829 0.97935 0.92208 0.91187 0.92131 0.89532 0.88198 0.91062 0.90182 0.74298 0.86980 0.90714 0.82396 0.83233 0.86353 0.91894 0.88005 0.90648 0.91915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.84 9.14 71.98 0.66 -0.18 16 2 C -0.10 -0.79 3.54 -9.60 -0.03 -0.82 16 3 H 0.09 0.65 8.14 -2.39 -0.02 0.64 16 4 C -0.12 -0.88 6.54 32.06 0.21 -0.67 16 5 C 0.11 1.39 6.99 86.93 0.61 1.99 16 6 N -1.02 -17.53 3.75 -506.01 -1.90 -19.43 16 7 S 2.82 71.29 6.40 -56.49 -0.36 70.92 16 8 O -1.01 -31.26 17.72 -128.00 -2.27 -33.52 16 9 O -1.01 -32.74 17.18 -128.00 -2.20 -34.94 16 10 N -1.12 -25.91 6.05 -190.79 -1.15 -27.07 16 11 C 0.17 3.90 6.37 85.63 0.55 4.45 16 12 C -0.05 -1.65 5.27 -19.88 -0.10 -1.75 16 13 C -0.17 -4.37 9.70 22.30 0.22 -4.15 16 14 C -0.07 -2.17 10.04 22.25 0.22 -1.94 16 15 C -0.24 -9.87 9.17 22.39 0.21 -9.67 16 16 C 0.11 5.38 6.65 22.58 0.15 5.53 16 17 O -0.24 -14.29 9.76 -22.75 -0.22 -14.51 16 18 C -0.41 -24.07 9.49 67.92 0.64 -23.43 16 19 H 0.10 5.46 5.20 -2.92 -0.02 5.44 16 20 C -0.03 -1.47 5.49 84.83 0.47 -1.00 16 21 N -0.92 -57.58 13.67 21.62 0.30 -57.28 16 22 Si 1.02 43.03 29.55 68.60 2.03 45.05 16 23 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 24 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 25 H -0.25 -9.76 7.11 99.48 0.71 -9.05 16 26 C -0.19 -8.01 9.64 22.39 0.22 -7.80 16 27 C 0.11 1.54 6.58 86.73 0.57 2.11 16 28 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.07 0.30 8.14 -2.38 -0.02 0.29 16 30 H 0.06 0.37 8.10 -2.39 -0.02 0.35 16 31 H 0.09 0.55 8.02 -2.39 -0.02 0.53 16 32 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.42 9.55 8.64 -96.75 -0.84 8.72 16 36 H 0.11 1.65 8.08 -2.39 -0.02 1.64 16 37 H 0.07 1.89 7.68 -2.38 -0.02 1.87 16 38 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 39 H 0.15 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.12 5.03 5.64 -2.91 -0.02 5.02 16 41 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 42 H 0.10 4.53 8.06 -2.91 -0.02 4.51 16 43 H 0.08 0.89 7.82 -2.38 -0.02 0.88 16 44 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -82.08 378.69 -1.02 -83.11 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.18 Total: 25.01 kcal Atomic # 6 Polarization: -41.90 SS G_CDS: 4.57 Total: -37.33 kcal Atomic # 7 Polarization: -101.03 SS G_CDS: -2.76 Total: -103.78 kcal Atomic # 8 Polarization: -78.29 SS G_CDS: -4.69 Total: -82.98 kcal Atomic # 14 Polarization: 43.03 SS G_CDS: 2.03 Total: 45.05 kcal Atomic # 16 Polarization: 71.29 SS G_CDS: -0.36 Total: 70.92 kcal Total: -82.08 -1.02 -83.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647135616.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.871 kcal (2) G-P(sol) polarization free energy of solvation -82.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds