Wall clock time and date at job start Wed Apr 1 2020 00:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.88355 * 2 1 4 4 C 1.55162 * 111.00287 * 123.87629 * 2 1 3 5 5 C 1.54320 * 102.93924 * 153.58033 * 4 2 1 6 6 N 1.47019 * 107.27559 * 337.80856 * 5 4 2 7 7 S 1.65600 * 125.65299 * 178.98799 * 6 5 4 8 8 O 1.42092 * 106.40490 * 203.51236 * 7 6 5 9 9 O 1.42096 * 106.39919 * 336.43525 * 7 6 5 10 10 N 1.65605 * 107.21638 * 89.97430 * 7 6 5 11 11 C 1.46494 * 119.99930 * 65.00358 * 10 7 6 12 12 C 1.50702 * 109.46818 * 164.99944 * 11 10 7 13 13 C 1.38327 * 119.96418 * 269.71839 * 12 11 10 14 14 C 1.38279 * 120.13670 * 179.76811 * 13 12 11 15 15 C 1.38123 * 120.07126 * 0.51380 * 14 13 12 16 16 C 1.38857 * 119.92605 * 359.74585 * 15 14 13 17 17 O 1.35757 * 120.06720 * 179.97438 * 16 15 14 18 18 C 1.34833 * 116.99845 * 354.48825 * 17 16 15 19 19 H 1.07999 * 119.99697 * 5.05603 * 18 17 16 20 20 C 1.38657 * 119.99895 * 185.05851 * 18 17 16 21 21 N 1.31553 * 119.99727 * 179.97438 * 20 18 17 22 22 Si 1.86798 * 119.99889 * 359.97438 * 20 18 17 23 23 H 1.48505 * 109.47092 * 89.99876 * 22 20 18 24 24 H 1.48505 * 109.47105 * 209.99801 * 22 20 18 25 25 H 1.48496 * 109.47407 * 329.99888 * 22 20 18 26 26 C 1.38074 * 119.96792 * 90.00345 * 12 11 10 27 27 C 1.47425 * 108.70018 * 358.94112 * 6 5 4 28 28 H 1.08995 * 109.47692 * 297.57556 * 1 2 3 29 29 H 1.09006 * 109.47293 * 177.57392 * 1 2 3 30 30 H 1.09002 * 109.46951 * 57.57942 * 1 2 3 31 31 H 1.08997 * 110.71965 * 271.93938 * 4 2 1 32 32 H 1.09002 * 110.71888 * 35.22000 * 4 2 1 33 33 H 1.08998 * 109.88231 * 97.23072 * 5 4 2 34 34 H 1.09005 * 109.88160 * 218.39191 * 5 4 2 35 35 H 0.96998 * 119.99877 * 245.00285 * 10 7 6 36 36 H 1.09002 * 109.47078 * 284.99559 * 11 10 7 37 37 H 1.09003 * 109.47558 * 45.00097 * 11 10 7 38 38 H 1.07993 * 119.92897 * 0.02562 * 13 12 11 39 39 H 1.08005 * 119.96428 * 180.25934 * 14 13 12 40 40 H 1.07994 * 120.03774 * 179.72355 * 15 14 13 41 41 H 0.97003 * 119.99468 * 179.97438 * 21 20 18 42 42 H 1.07999 * 120.03653 * 359.97438 * 26 12 11 43 43 H 1.08999 * 110.37119 * 265.28927 * 27 6 5 44 44 H 1.09000 * 110.36718 * 142.96895 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9185 1.0184 0.0000 4 6 2.0861 -0.8074 1.2026 5 6 3.4674 -1.2737 0.6966 6 7 3.4272 -1.2433 -0.7727 7 16 4.6811 -1.6352 -1.7809 8 8 4.4308 -0.9685 -3.0105 9 8 5.8726 -1.4555 -1.0278 10 7 4.5676 -3.2569 -2.0967 11 6 3.4177 -3.7799 -2.8385 12 6 3.7184 -5.1794 -3.3098 13 6 4.3067 -5.3808 -4.5455 14 6 4.5886 -6.6631 -4.9795 15 6 4.2737 -7.7477 -4.1844 16 6 3.6782 -7.5491 -2.9458 17 8 3.3670 -8.6131 -2.1623 18 6 3.5563 -9.8389 -2.6911 19 1 4.0154 -9.9425 -3.6632 20 6 3.1615 -10.9662 -1.9870 21 7 3.3457 -12.1621 -2.5033 22 14 2.3679 -10.7868 -0.3055 23 1 0.8956 -10.6736 -0.4626 24 1 2.6873 -11.9777 0.5222 25 1 2.8900 -9.5666 0.3606 26 6 3.4011 -6.2595 -2.5104 27 6 2.0853 -0.8071 -1.1999 28 1 -0.3634 0.4757 0.9108 29 1 -0.3634 -1.0268 -0.0435 30 1 -0.3633 0.5510 -0.8675 31 1 2.1921 -0.1690 2.0797 32 1 1.4468 -1.6626 1.4216 33 1 4.2425 -0.5992 1.0604 34 1 3.6650 -2.2889 1.0411 35 1 5.2625 -3.8604 -1.7906 36 1 2.5427 -3.7956 -2.1886 37 1 3.2195 -3.1413 -3.6993 38 1 4.5501 -4.5345 -5.1707 39 1 5.0517 -6.8168 -5.9430 40 1 4.4900 -8.7492 -4.5259 41 1 3.0698 -12.9508 -2.0105 42 1 2.9380 -6.1019 -1.5476 43 1 1.4520 -1.6709 -1.4017 44 1 2.1561 -0.1728 -2.0835 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647135617.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:14 Heat of formation + Delta-G solvation = -104.649809 kcal Electronic energy + Delta-G solvation = -27235.832987 eV Core-core repulsion = 23279.419454 eV Total energy + Delta-G solvation = -3956.413533 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.95578 -39.57056 -38.79769 -38.37961 -37.03306 -36.04321 -34.45385 -33.44578 -31.92558 -30.88162 -30.44314 -27.40054 -26.94219 -26.46689 -23.33850 -23.29318 -22.36106 -21.26391 -20.46796 -19.72386 -19.22666 -18.95812 -18.28748 -17.50582 -16.90686 -16.71448 -16.59673 -15.95416 -15.79562 -15.66906 -15.12200 -15.06452 -14.71757 -14.54542 -14.40038 -14.24847 -14.08681 -13.86295 -13.73674 -13.62471 -13.39424 -13.32550 -13.25102 -13.02444 -12.75812 -12.50289 -12.47980 -12.46667 -12.29610 -11.93936 -11.88805 -11.54036 -11.46538 -11.33233 -10.91888 -10.58367 -10.05896 -9.78122 -9.12310 -8.50211 -6.23449 -0.56091 0.42637 0.65053 1.32292 1.36077 1.52283 1.88743 2.27898 2.49455 2.77090 2.99338 3.09146 3.19954 3.56705 3.71170 3.84502 4.00484 4.05760 4.25981 4.32686 4.35574 4.42592 4.50979 4.52216 4.58525 4.66363 4.67918 4.79276 4.84584 4.89228 4.95187 4.97194 5.06937 5.20518 5.21968 5.23528 5.35511 5.37417 5.40994 5.55810 5.62695 5.69598 5.74594 5.88938 5.98013 6.20005 6.84076 7.57284 8.61428 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013021 B = 0.002874 C = 0.002550 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2149.863842 B = 9741.683209 C =10977.406292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.099 4.099 3 H 0.085 0.915 4 C -0.119 4.119 5 C 0.110 3.890 6 N -1.019 6.019 7 S 2.823 3.177 8 O -0.999 6.999 9 O -1.007 7.007 10 N -1.118 6.118 11 C 0.169 3.831 12 C -0.056 4.056 13 C -0.167 4.167 14 C -0.077 4.077 15 C -0.232 4.232 16 C 0.119 3.881 17 O -0.243 6.243 18 C -0.399 4.399 19 H 0.080 0.920 20 C 0.009 3.991 21 N -0.925 5.925 22 Si 0.972 3.028 23 H -0.264 1.264 24 H -0.270 1.270 25 H -0.261 1.261 26 C -0.167 4.167 27 C 0.107 3.893 28 H 0.067 0.933 29 H 0.061 0.939 30 H 0.062 0.938 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.421 0.579 36 H 0.092 0.908 37 H 0.098 0.902 38 H 0.145 0.855 39 H 0.140 0.860 40 H 0.108 0.892 41 H 0.285 0.715 42 H 0.133 0.867 43 H 0.082 0.918 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.578 25.981 5.914 27.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.119 4.119 3 H 0.103 0.897 4 C -0.158 4.158 5 C -0.015 4.015 6 N -0.861 5.861 7 S 2.832 3.168 8 O -0.982 6.982 9 O -0.991 6.991 10 N -0.880 5.880 11 C 0.044 3.956 12 C -0.057 4.057 13 C -0.186 4.186 14 C -0.095 4.095 15 C -0.251 4.251 16 C 0.070 3.930 17 O -0.150 6.150 18 C -0.476 4.476 19 H 0.098 0.902 20 C -0.189 4.189 21 N -0.565 5.565 22 Si 0.794 3.206 23 H -0.189 1.189 24 H -0.195 1.195 25 H -0.185 1.185 26 C -0.187 4.187 27 C -0.018 4.018 28 H 0.086 0.914 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.113 0.887 32 H 0.103 0.897 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.256 0.744 36 H 0.110 0.890 37 H 0.116 0.884 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.126 0.874 41 H 0.094 0.906 42 H 0.151 0.849 43 H 0.100 0.900 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.078 26.463 5.686 27.539 hybrid contribution 0.227 -1.538 0.364 1.597 sum -4.851 24.925 6.050 26.103 Atomic orbital electron populations 1.21701 0.92665 1.02656 1.02741 1.22358 0.96863 0.99177 0.93536 0.89701 1.22735 0.94039 1.00738 0.98289 1.21907 0.99898 1.01873 0.77785 1.58802 1.27571 1.82152 1.17572 1.00479 0.71560 0.72553 0.72162 1.93569 1.85930 1.73931 1.44791 1.93575 1.46632 1.85801 1.73095 1.55863 1.33457 1.28039 1.70651 1.20202 0.87831 0.90904 0.96700 1.19509 0.98368 0.93707 0.94143 1.21085 1.03501 0.96953 0.97060 1.21122 0.97369 0.91840 0.99171 1.21387 1.06966 1.00221 0.96574 1.19609 0.94579 0.88293 0.90553 1.83512 1.77820 1.13250 1.40458 1.20693 1.41513 0.80424 1.04928 0.90205 1.25296 0.97155 0.93121 1.03331 1.69734 1.47855 0.98284 1.40655 0.85202 0.79079 0.78419 0.77925 1.18925 1.19467 1.18492 1.20319 1.07587 0.88651 1.02169 1.22417 0.81506 0.99177 0.98663 0.91365 0.92035 0.91934 0.88732 0.89689 0.91472 0.91129 0.74373 0.88955 0.88369 0.83765 0.84255 0.87416 0.90582 0.84919 0.90000 0.90284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.98 9.30 71.98 0.67 -0.32 16 2 C -0.10 -0.94 3.64 -9.40 -0.03 -0.98 16 3 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 4 C -0.12 -1.09 6.42 31.78 0.20 -0.88 16 5 C 0.11 1.54 6.99 86.73 0.61 2.14 16 6 N -1.02 -16.93 3.76 -506.45 -1.90 -18.83 16 7 S 2.82 62.43 6.39 -56.49 -0.36 62.07 16 8 O -1.00 -26.77 16.93 -128.00 -2.17 -28.94 16 9 O -1.01 -28.57 17.72 -128.00 -2.27 -30.83 16 10 N -1.12 -22.91 6.05 -190.79 -1.15 -24.07 16 11 C 0.17 3.41 6.37 85.63 0.55 3.96 16 12 C -0.06 -1.54 5.27 -19.88 -0.10 -1.65 16 13 C -0.17 -4.70 9.70 22.30 0.22 -4.48 16 14 C -0.08 -2.52 10.04 22.25 0.22 -2.30 16 15 C -0.23 -9.78 9.17 22.39 0.21 -9.57 16 16 C 0.12 5.26 6.65 22.58 0.15 5.41 16 17 O -0.24 -12.69 8.59 -22.85 -0.20 -12.89 16 18 C -0.40 -23.01 9.95 67.92 0.68 -22.34 16 19 H 0.08 4.84 5.44 -2.91 -0.02 4.83 16 20 C 0.01 0.53 5.49 84.83 0.47 0.99 16 21 N -0.92 -54.63 13.96 21.61 0.30 -54.32 16 22 Si 0.97 44.24 28.62 68.60 1.96 46.20 16 23 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 25 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 26 C -0.17 -5.80 9.65 22.39 0.22 -5.59 16 27 C 0.11 1.38 6.57 86.85 0.57 1.96 16 28 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.06 0.44 8.10 -2.38 -0.02 0.42 16 30 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.08 0.70 8.04 -2.39 -0.02 0.68 16 33 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 34 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.42 8.72 8.64 -96.75 -0.84 7.88 16 36 H 0.09 1.49 8.08 -2.39 -0.02 1.47 16 37 H 0.10 1.77 7.69 -2.39 -0.02 1.76 16 38 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 39 H 0.14 3.77 8.06 -2.91 -0.02 3.75 16 40 H 0.11 5.06 5.64 -2.91 -0.02 5.04 16 41 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 42 H 0.13 4.16 8.06 -2.91 -0.02 4.14 16 43 H 0.08 0.86 8.00 -2.39 -0.02 0.84 16 44 H 0.08 1.09 7.78 -2.39 -0.02 1.07 16 Total: -1.00 -73.22 377.29 -0.99 -74.21 By element: Atomic # 1 Polarization: 20.87 SS G_CDS: 0.18 Total: 21.05 kcal Atomic # 6 Polarization: -38.26 SS G_CDS: 4.61 Total: -33.65 kcal Atomic # 7 Polarization: -94.47 SS G_CDS: -2.75 Total: -97.22 kcal Atomic # 8 Polarization: -68.03 SS G_CDS: -4.63 Total: -72.66 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.96 Total: 46.20 kcal Atomic # 16 Polarization: 62.43 SS G_CDS: -0.36 Total: 62.07 kcal Total: -73.22 -0.99 -74.21 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647135617.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.441 kcal (2) G-P(sol) polarization free energy of solvation -73.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds