Wall clock time and date at job start Tue Mar 31 2020 23:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47193 * 179.97438 * 2 1 4 4 O 1.42904 * 109.46858 * 208.61796 * 3 2 1 5 5 C 1.42898 * 113.99948 * 180.02562 * 4 3 2 6 6 C 1.52996 * 109.47180 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.47159 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00262 * 0.02562 * 7 6 5 9 9 N 1.34777 * 119.99928 * 179.72352 * 7 6 5 10 10 C 1.47424 * 125.64879 * 0.30383 * 9 7 6 11 11 C 1.54912 * 104.83227 * 204.08629 * 10 9 7 12 12 C 1.55149 * 101.58276 * 322.99076 * 11 10 9 13 13 H 1.08994 * 110.72431 * 276.95819 * 12 11 10 14 14 N 1.46507 * 110.71899 * 153.85927 * 12 11 10 15 15 C 1.34777 * 119.99267 * 86.45473 * 14 12 11 16 16 O 1.21278 * 120.00770 * 0.02562 * 15 14 12 17 17 C 1.50703 * 119.99753 * 179.97438 * 15 14 12 18 18 S 1.80996 * 109.47321 * 180.02562 * 17 15 14 19 19 C 1.76202 * 99.99937 * 180.02562 * 18 17 15 20 20 H 1.07996 * 120.00311 * 359.97438 * 19 18 17 21 21 C 1.38807 * 119.99751 * 180.02562 * 19 18 17 22 22 N 1.31625 * 119.99866 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99561 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47575 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47017 * 119.99992 * 23 21 19 26 26 H 1.48496 * 109.46844 * 239.99185 * 23 21 19 27 27 C 1.47020 * 125.64991 * 179.97438 * 9 7 6 28 28 H 4.38444 * 5.44413 * 179.97438 * 4 1 2 29 29 H 1.09007 * 109.47145 * 88.61980 * 3 2 1 30 30 H 1.08994 * 109.47752 * 328.61836 * 3 2 1 31 31 H 1.09004 * 109.47053 * 60.00021 * 5 4 3 32 32 H 1.09000 * 109.47521 * 300.00363 * 5 4 3 33 33 H 1.09004 * 109.47066 * 60.00083 * 6 5 4 34 34 H 1.08994 * 109.47405 * 299.99913 * 6 5 4 35 35 H 1.08993 * 110.36793 * 322.92770 * 10 9 7 36 36 H 1.08999 * 110.36611 * 85.25030 * 10 9 7 37 37 H 1.09006 * 110.99759 * 81.06710 * 11 10 9 38 38 H 1.08998 * 111.00623 * 204.91432 * 11 10 9 39 39 H 0.96992 * 120.00108 * 266.45579 * 14 12 11 40 40 H 1.09005 * 109.47021 * 300.00277 * 17 15 14 41 41 H 1.09005 * 109.46938 * 59.99666 * 17 15 14 42 42 H 0.96999 * 119.99933 * 180.02562 * 22 21 19 43 43 H 1.09004 * 109.88529 * 298.40079 * 27 9 7 44 44 H 1.09000 * 109.88341 * 59.55883 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1217 1.1836 0.6453 5 6 4.5462 1.2836 0.6989 6 6 4.9401 2.5817 1.4064 7 6 6.4424 2.6869 1.4634 8 8 7.1303 1.8101 0.9849 9 7 7.0214 3.7582 2.0409 10 6 6.3089 4.8914 2.6585 11 6 7.3112 6.0710 2.5973 12 6 8.6582 5.3493 2.8653 13 1 8.8167 5.2130 3.9350 14 7 9.7716 6.0917 2.2688 15 6 10.3642 7.0866 2.9582 16 8 9.9762 7.3671 4.0725 17 6 11.5098 7.8499 2.3450 18 16 12.0865 9.1106 3.5086 19 6 13.3871 9.8291 2.5615 20 1 13.6051 9.4547 1.5722 21 6 14.1322 10.8755 3.0874 22 7 13.8667 11.3314 4.2933 23 14 15.5114 11.6366 2.0836 24 1 15.6064 10.9486 0.7711 25 1 15.2291 13.0785 1.8679 26 1 16.7956 11.4877 2.8142 27 6 8.4684 3.9871 2.1652 28 1 -1.0502 -0.0003 -0.0004 29 1 3.0094 -0.0239 -1.0274 30 1 3.0098 -0.8764 0.5351 31 1 4.9486 1.2859 -0.3142 32 1 4.9498 0.4331 1.2482 33 1 4.5376 2.5799 2.4194 34 1 4.5366 3.4320 0.8567 35 1 5.4090 5.1284 2.0911 36 1 6.0561 4.6617 3.6937 37 1 7.3066 6.5367 1.6118 38 1 7.0994 6.8044 3.3753 39 1 10.0821 5.8671 1.3778 40 1 12.3256 7.1626 2.1206 41 1 11.1756 8.3296 1.4250 42 1 14.3872 12.0629 4.6607 43 1 8.9191 3.1947 2.7629 44 1 8.9258 4.0138 1.1761 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001687999440.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:49 Heat of formation + Delta-G solvation = -58.351611 kcal Electronic energy + Delta-G solvation = -25250.338721 eV Core-core repulsion = 21295.932828 eV Total energy + Delta-G solvation = -3954.405892 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.66402 -39.39208 -38.55362 -37.53674 -34.27312 -33.95329 -32.45911 -32.16863 -31.03192 -29.66990 -28.31501 -27.34222 -25.52434 -24.60448 -23.09979 -21.54848 -20.54336 -19.68418 -18.86521 -18.00891 -17.85041 -17.17601 -16.78844 -16.62311 -16.18265 -15.88422 -15.54782 -15.26339 -14.96721 -14.83126 -14.65005 -13.99360 -13.94141 -13.67087 -13.27942 -13.12088 -13.09986 -12.74642 -12.65411 -12.43766 -12.16845 -12.06994 -11.92076 -11.69779 -11.19827 -11.09096 -11.05099 -11.04476 -10.95624 -10.78384 -10.31003 -10.08258 -9.84059 -9.52037 -9.15890 -9.10061 -8.99515 -8.27780 -6.53790 -6.24953 -3.95690 1.91054 2.19667 2.30247 2.41756 2.96931 2.99113 3.19719 3.26109 3.30286 3.38503 3.64333 3.91987 4.09090 4.17410 4.22081 4.34999 4.50157 4.66314 4.72734 4.78154 4.83108 4.86088 4.91513 4.96072 5.09510 5.10733 5.16182 5.27309 5.30456 5.38499 5.40979 5.49163 5.58964 5.70815 5.80136 5.83484 5.90722 6.09227 6.48792 6.55603 7.02491 7.05839 7.55982 7.57879 7.69927 8.32483 8.49347 9.20872 10.82565 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.040436 B = 0.001427 C = 0.001413 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.291501 B =19619.044783 C =19807.629172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.195 4.195 3 C 0.174 3.826 4 O -0.386 6.386 5 C 0.078 3.922 6 C -0.135 4.135 7 C 0.535 3.465 8 O -0.541 6.541 9 N -0.616 5.616 10 C 0.097 3.903 11 C -0.146 4.146 12 C 0.138 3.862 13 H 0.106 0.894 14 N -0.731 5.731 15 C 0.536 3.464 16 O -0.514 6.514 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.536 4.536 20 H 0.073 0.927 21 C 0.074 3.926 22 N -0.867 5.867 23 Si 0.918 3.082 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C 0.104 3.896 28 H 0.222 0.778 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.400 0.600 40 H 0.091 0.909 41 H 0.091 0.909 42 H 0.268 0.732 43 H 0.079 0.921 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.537 -20.653 -8.399 31.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.195 4.195 3 C 0.099 3.901 4 O -0.306 6.306 5 C 0.001 3.999 6 C -0.175 4.175 7 C 0.324 3.676 8 O -0.418 6.418 9 N -0.351 5.351 10 C -0.025 4.025 11 C -0.185 4.185 12 C 0.031 3.969 13 H 0.124 0.876 14 N -0.386 5.386 15 C 0.322 3.678 16 O -0.387 6.387 17 C -0.305 4.305 18 S 0.167 5.833 19 C -0.684 4.684 20 H 0.092 0.908 21 C -0.135 4.135 22 N -0.503 5.503 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.205 1.205 27 C -0.020 4.020 28 H 0.239 0.761 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.122 0.878 35 H 0.101 0.899 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.114 0.886 39 H 0.235 0.765 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.078 0.922 43 H 0.098 0.902 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -22.899 -20.452 -6.602 31.404 hybrid contribution 1.438 -0.008 -2.419 2.814 sum -21.461 -20.460 -9.021 30.993 Atomic orbital electron populations 1.25019 0.95930 0.98113 0.99947 1.22542 0.93897 1.01959 1.01121 1.19051 0.84672 0.88485 0.97892 1.87866 1.21584 1.41570 1.79585 1.22160 0.79912 0.97118 1.00721 1.21428 0.91976 0.99858 1.04213 1.20026 0.89965 0.80334 0.77279 1.90741 1.65350 1.39013 1.46734 1.48385 1.07421 1.21193 1.58095 1.22463 0.96147 0.85236 0.98703 1.23262 0.93924 0.97229 1.04115 1.21819 0.86504 0.89376 0.99162 0.87634 1.45974 1.35540 1.36705 1.20363 1.20335 0.82871 0.79040 0.85522 1.90705 1.63681 1.65375 1.18961 1.23542 0.98245 1.03224 1.05477 1.85388 1.41667 1.35775 1.20444 1.22909 1.19416 1.21676 1.04408 0.90850 1.24987 0.97459 0.95827 0.95243 1.70020 1.39433 1.25762 1.15060 0.86119 0.80774 0.78895 0.79728 1.19602 1.20550 1.20549 1.22098 0.81445 0.96935 1.01479 0.76088 0.90560 0.90560 0.91913 0.91889 0.87743 0.87768 0.89899 0.90425 0.89958 0.88591 0.76523 0.89089 0.89121 0.92205 0.90249 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.09 19.25 29.55 0.57 -0.52 16 2 C -0.20 -1.51 13.73 -37.13 -0.51 -2.02 16 3 C 0.17 1.13 6.41 34.37 0.22 1.35 16 4 O -0.39 -3.18 10.30 -35.23 -0.36 -3.54 16 5 C 0.08 0.56 5.23 37.16 0.19 0.76 16 6 C -0.13 -0.89 5.08 -27.88 -0.14 -1.03 16 7 C 0.54 5.01 7.85 -10.98 -0.09 4.93 16 8 O -0.54 -6.96 16.31 5.55 0.09 -6.87 16 9 N -0.62 -5.20 3.33 -170.51 -0.57 -5.77 16 10 C 0.10 0.63 6.69 -2.53 -0.02 0.61 16 11 C -0.15 -1.25 6.77 -24.59 -0.17 -1.42 16 12 C 0.14 1.40 3.23 -66.09 -0.21 1.18 16 13 H 0.11 1.22 7.69 -51.93 -0.40 0.82 16 14 N -0.73 -8.67 5.21 -52.03 -0.27 -8.94 16 15 C 0.54 9.19 7.85 -10.98 -0.09 9.10 16 16 O -0.51 -10.76 15.59 5.56 0.09 -10.67 16 17 C -0.15 -2.95 6.16 36.01 0.22 -2.73 16 18 S -0.06 -1.56 20.57 -107.50 -2.21 -3.77 16 19 C -0.54 -14.99 9.50 30.94 0.29 -14.69 16 20 H 0.07 1.95 7.80 -52.49 -0.41 1.54 16 21 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 22 N -0.87 -25.79 13.22 55.49 0.73 -25.06 16 23 Si 0.92 21.13 29.55 -169.99 -5.02 16.11 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 C 0.10 0.94 6.63 -3.06 -0.02 0.92 16 28 H 0.22 0.57 7.80 -54.08 -0.42 0.15 16 29 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 32 H 0.06 0.45 8.10 -51.93 -0.42 0.03 16 33 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.10 0.56 7.84 -51.93 -0.41 0.16 16 35 H 0.08 0.39 7.47 -51.93 -0.39 0.00 16 36 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.10 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.40 3.72 8.32 -40.82 -0.34 3.38 16 40 H 0.09 1.61 8.14 -51.91 -0.42 1.19 16 41 H 0.09 1.60 8.14 -51.91 -0.42 1.17 16 42 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 43 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 44 H 0.08 0.68 7.69 -51.93 -0.40 0.28 16 LS Contribution 397.65 15.07 5.99 5.99 Total: -1.00 -36.74 397.65 -7.92 -44.66 By element: Atomic # 1 Polarization: 5.98 SS G_CDS: -6.55 Total: -0.56 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: 0.16 Total: -1.57 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: -0.10 Total: -39.77 kcal Atomic # 8 Polarization: -20.89 SS G_CDS: -0.19 Total: -21.08 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: -1.56 SS G_CDS: -2.21 Total: -3.77 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -36.74 -7.92 -44.66 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001687999440.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.696 kcal (2) G-P(sol) polarization free energy of solvation -36.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds