Wall clock time and date at job start Wed Apr 1 2020 00:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.53000 * 109.47233 * 239.99626 * 2 1 3 5 5 C 1.53005 * 109.46867 * 175.00027 * 4 2 1 6 6 C 1.53008 * 109.46774 * 180.02562 * 5 4 2 7 7 N 1.46497 * 109.46734 * 179.97438 * 6 5 4 8 8 C 1.34777 * 120.00041 * 179.97438 * 7 6 5 9 9 O 1.21279 * 119.99731 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.00198 * 180.02562 * 8 7 6 11 11 S 1.81002 * 109.46987 * 180.02562 * 10 8 7 12 12 C 1.76201 * 99.99823 * 180.02562 * 11 10 8 13 13 H 1.07992 * 120.00078 * 359.97438 * 12 11 10 14 14 C 1.38802 * 119.99547 * 180.02562 * 12 11 10 15 15 N 1.31634 * 119.99219 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00481 * 359.97438 * 14 12 11 17 17 H 1.48503 * 109.47057 * 89.99865 * 16 14 12 18 18 H 1.48501 * 109.47450 * 209.99980 * 16 14 12 19 19 H 1.48504 * 109.47061 * 330.00300 * 16 14 12 20 20 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 21 21 C 1.34778 * 119.99771 * 274.99826 * 20 2 1 22 22 O 1.21698 * 120.00342 * 0.02562 * 21 20 2 23 23 C 1.46667 * 119.99912 * 180.02562 * 21 20 2 24 24 C 1.36545 * 125.98378 * 179.71580 * 23 21 20 25 25 C 1.40369 * 106.70214 * 179.90846 * 24 23 21 26 26 C 1.35128 * 107.11608 * 0.35619 * 25 24 23 27 27 O 1.33928 * 108.76934 * 359.77712 * 26 25 24 28 28 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 29 29 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 31 31 H 1.08990 * 109.47170 * 295.00238 * 4 2 1 32 32 H 1.09001 * 109.46952 * 55.00315 * 4 2 1 33 33 H 1.09000 * 109.47443 * 300.00098 * 5 4 2 34 34 H 1.09001 * 109.47099 * 60.00379 * 5 4 2 35 35 H 1.09000 * 109.47044 * 300.00132 * 6 5 4 36 36 H 1.09001 * 109.47171 * 60.00211 * 6 5 4 37 37 H 0.97003 * 120.00464 * 0.02562 * 7 6 5 38 38 H 1.09000 * 109.47355 * 300.00336 * 10 8 7 39 39 H 1.09001 * 109.47069 * 60.00544 * 10 8 7 40 40 H 0.97004 * 119.99514 * 179.97438 * 15 14 12 41 41 H 0.96998 * 120.00630 * 95.00428 * 20 2 1 42 42 H 1.07992 * 126.64969 * 0.04004 * 24 23 21 43 43 H 1.07999 * 126.44011 * 180.15498 * 25 24 23 44 44 H 1.07997 * 125.61866 * 179.78302 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 3.5649 -0.6133 -1.3136 6 6 4.0749 -1.3341 -2.5632 7 7 5.5349 -1.2302 -2.6251 8 6 6.2079 -1.7953 -3.6469 9 8 5.6049 -2.3895 -4.5153 10 6 7.7098 -1.6889 -3.7103 11 16 8.3131 -2.5415 -5.1886 12 6 10.0450 -2.2673 -5.0145 13 1 10.4212 -1.7100 -4.1695 14 6 10.9255 -2.7668 -5.9641 15 7 12.2192 -2.5615 -5.8343 16 14 10.2747 -3.7302 -7.4262 17 1 9.9872 -2.7974 -8.5453 18 1 11.2919 -4.7224 -7.8577 19 1 9.0276 -4.4368 -7.0379 20 7 2.0183 -0.6906 1.1962 21 6 2.1470 -0.0182 2.3571 22 8 1.8572 1.1625 2.4119 23 6 2.6363 -0.7095 3.5546 24 6 2.8181 -0.1492 4.7864 25 6 3.2942 -1.1679 5.6267 26 6 3.3885 -2.2891 4.8783 27 8 2.9912 -2.0089 3.6304 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.7517 -1.7715 -1.2055 32 1 1.6055 -0.2618 -2.1369 33 1 3.8533 0.4369 -1.3572 34 1 3.9995 -1.0728 -0.4258 35 1 3.7865 -2.3844 -2.5199 36 1 3.6403 -0.8743 -3.4507 37 1 6.0173 -0.7553 -1.9303 38 1 7.9982 -0.6386 -3.7539 39 1 8.1445 -2.1485 -2.8227 40 1 12.8347 -2.9109 -6.4977 41 1 2.2490 -1.6318 1.1527 42 1 2.6299 0.8780 5.0615 43 1 3.5419 -1.0725 6.6735 44 1 3.7282 -3.2524 5.2288 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001701436675.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:11:40 Heat of formation + Delta-G solvation = -74.861749 kcal Electronic energy + Delta-G solvation = -25518.322875 eV Core-core repulsion = 21563.201049 eV Total energy + Delta-G solvation = -3955.121826 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -43.14338 -40.14915 -39.28707 -37.21238 -35.12476 -33.61108 -32.80006 -32.44177 -31.29720 -29.94345 -29.22188 -26.10947 -25.56903 -24.23409 -22.31964 -22.08655 -21.39133 -20.81565 -20.37893 -19.02043 -17.85879 -17.02753 -16.82033 -16.67371 -16.37310 -15.94489 -15.72525 -15.13400 -14.96517 -14.78902 -14.59633 -14.14033 -13.77470 -13.62689 -13.57572 -13.48054 -13.19709 -13.15682 -12.88447 -12.80284 -12.65454 -12.01639 -11.89640 -11.79437 -11.32031 -11.25745 -11.14086 -11.01154 -10.71007 -10.60311 -10.55238 -9.86465 -9.69824 -9.52462 -9.15893 -9.02879 -8.97056 -8.50791 -6.92441 -6.29385 -4.01155 0.58467 1.87780 2.18582 2.73282 2.73495 2.75982 2.96857 3.29789 3.33716 3.50028 3.64290 4.12313 4.24898 4.32691 4.41689 4.49553 4.54060 4.55278 4.72297 4.84876 4.96261 5.06206 5.09605 5.13627 5.22159 5.27539 5.28770 5.30589 5.34029 5.39260 5.50822 5.60632 5.73164 5.77716 5.80525 5.82141 5.90523 5.98351 6.00934 6.32258 6.51810 6.97367 7.59627 7.60719 7.93746 8.41310 8.48102 9.16744 10.79829 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.015202 B = 0.001794 C = 0.001658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1841.367778 B =15599.949154 C =16882.369404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 H 0.094 0.906 4 C -0.125 4.125 5 C -0.133 4.133 6 C 0.121 3.879 7 N -0.738 5.738 8 C 0.530 3.470 9 O -0.520 6.520 10 C -0.124 4.124 11 S -0.142 6.142 12 C -0.521 4.521 13 H 0.088 0.912 14 C 0.095 3.905 15 N -0.880 5.880 16 Si 0.857 3.143 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 N -0.714 5.714 21 C 0.605 3.395 22 O -0.520 6.520 23 C -0.084 4.084 24 C -0.118 4.118 25 C -0.226 4.226 26 C -0.003 4.003 27 O -0.164 6.164 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.087 0.913 33 H 0.072 0.928 34 H 0.069 0.931 35 H 0.065 0.935 36 H 0.066 0.934 37 H 0.399 0.601 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.406 0.594 42 H 0.160 0.840 43 H 0.158 0.842 44 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.886 3.284 22.298 32.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.037 3.963 3 H 0.112 0.888 4 C -0.163 4.163 5 C -0.171 4.171 6 C -0.003 4.003 7 N -0.392 5.392 8 C 0.316 3.684 9 O -0.395 6.395 10 C -0.275 4.275 11 S 0.084 5.916 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.114 4.114 15 N -0.517 5.517 16 Si 0.682 3.318 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 N -0.365 5.365 21 C 0.391 3.609 22 O -0.398 6.398 23 C -0.136 4.136 24 C -0.139 4.139 25 C -0.245 4.245 26 C -0.073 4.073 27 O -0.059 6.059 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.106 0.894 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.233 0.767 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.241 0.759 42 H 0.178 0.822 43 H 0.175 0.825 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -24.950 2.924 20.505 32.427 hybrid contribution 1.213 0.099 1.023 1.590 sum -23.737 3.023 21.528 32.187 Atomic orbital electron populations 1.22189 0.94737 1.02463 1.02927 1.21095 0.94301 0.97719 0.83143 0.88817 1.21836 0.95308 1.01735 0.97430 1.21824 0.95607 1.01639 0.97988 1.21281 0.80432 1.00760 0.97813 1.45973 1.07262 1.58513 1.27499 1.20283 0.89445 0.77815 0.80879 1.90697 1.69909 1.40972 1.37934 1.23283 0.93444 1.05626 1.05159 1.84780 1.06933 1.71314 1.28576 1.22318 0.88647 1.41543 1.14384 0.89386 1.24725 0.94117 0.94938 0.97603 1.69944 1.01550 1.44386 1.35799 0.86724 0.80780 0.81096 0.83182 1.19201 1.19943 1.15933 1.46034 1.66694 1.14401 1.09390 1.16540 0.77515 0.85687 0.81111 1.90896 1.50622 1.14259 1.83976 1.22094 1.11413 0.82689 0.97390 1.22014 0.99395 1.01242 0.91249 1.21906 1.07848 0.92829 1.01954 1.24476 1.00610 1.01041 0.81161 1.84065 1.63810 1.26484 1.31579 0.91123 0.92225 0.91954 0.90692 0.89420 0.90915 0.91189 0.91637 0.91541 0.76686 0.88502 0.88483 0.91944 0.75905 0.82208 0.82479 0.77186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.97 9.48 37.16 0.35 -0.61 16 2 C 0.14 0.89 2.57 -67.93 -0.17 0.71 16 3 H 0.09 0.72 7.58 -51.93 -0.39 0.33 16 4 C -0.12 -0.66 4.75 -26.73 -0.13 -0.79 16 5 C -0.13 -0.90 5.22 -26.72 -0.14 -1.03 16 6 C 0.12 1.22 5.67 -4.04 -0.02 1.20 16 7 N -0.74 -9.09 5.56 -60.29 -0.33 -9.43 16 8 C 0.53 9.33 7.85 -10.99 -0.09 9.25 16 9 O -0.52 -11.19 15.86 5.56 0.09 -11.10 16 10 C -0.12 -2.40 6.16 36.00 0.22 -2.18 16 11 S -0.14 -3.62 18.55 -107.50 -1.99 -5.61 16 12 C -0.52 -15.04 10.04 30.94 0.31 -14.73 16 13 H 0.09 2.64 8.03 -52.49 -0.42 2.22 16 14 C 0.09 2.78 5.50 -17.43 -0.10 2.68 16 15 N -0.88 -26.58 13.97 55.49 0.78 -25.80 16 16 Si 0.86 21.80 27.74 -169.99 -4.71 17.08 16 17 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.24 -5.97 6.74 56.52 0.38 -5.59 16 20 N -0.71 -4.84 4.53 -55.11 -0.25 -5.09 16 21 C 0.61 5.65 7.75 -12.86 -0.10 5.55 16 22 O -0.52 -6.39 16.53 5.19 0.09 -6.30 16 23 C -0.08 -0.72 7.13 -36.79 -0.26 -0.98 16 24 C -0.12 -0.92 10.62 -39.39 -0.42 -1.34 16 25 C -0.23 -1.30 10.87 -39.89 -0.43 -1.73 16 26 C 0.00 -0.02 12.08 29.63 0.36 0.34 16 27 O -0.16 -1.19 10.40 5.00 0.05 -1.14 16 28 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.46 7.75 -51.93 -0.40 0.06 16 35 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 37 H 0.40 3.85 8.47 -40.82 -0.35 3.51 16 38 H 0.10 1.74 8.14 -51.92 -0.42 1.32 16 39 H 0.10 1.74 8.14 -51.92 -0.42 1.31 16 40 H 0.27 7.59 8.31 -40.82 -0.34 7.25 16 41 H 0.41 2.15 8.36 -40.82 -0.34 1.81 16 42 H 0.16 1.14 8.06 -52.49 -0.42 0.72 16 43 H 0.16 0.54 8.06 -52.49 -0.42 0.12 16 44 H 0.21 0.25 8.06 -52.49 -0.42 -0.17 16 LS Contribution 393.87 15.07 5.94 5.94 Total: -1.00 -36.86 393.87 -7.53 -44.39 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.56 Total: 0.73 kcal Atomic # 6 Polarization: -3.05 SS G_CDS: -0.62 Total: -3.67 kcal Atomic # 7 Polarization: -40.51 SS G_CDS: 0.19 Total: -40.32 kcal Atomic # 8 Polarization: -18.77 SS G_CDS: 0.23 Total: -18.54 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.71 Total: 17.08 kcal Atomic # 16 Polarization: -3.62 SS G_CDS: -1.99 Total: -5.61 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.86 -7.53 -44.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001701436675.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.473 kcal (2) G-P(sol) polarization free energy of solvation -36.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds