Wall clock time and date at job start Wed Apr 1 2020 00:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47022 * 2 1 4 4 N 1.46496 * 109.47135 * 120.00332 * 2 1 3 5 5 C 1.36944 * 119.99765 * 275.00067 * 4 2 1 6 6 H 1.07994 * 120.00274 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99927 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00176 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00092 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47308 * 59.99923 * 9 7 5 11 11 H 1.48504 * 109.47444 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47075 * 299.99884 * 9 7 5 13 13 C 1.50698 * 109.47156 * 240.00419 * 2 1 3 14 14 C 1.38227 * 120.00136 * 100.00031 * 13 2 1 15 15 C 1.38244 * 120.00133 * 180.02562 * 14 13 2 16 16 C 1.38232 * 119.99611 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99860 * 179.97438 * 16 15 14 18 18 N 1.46505 * 109.47064 * 89.99969 * 17 16 15 19 19 C 1.34771 * 119.99622 * 179.97438 * 18 17 16 20 20 O 1.21280 * 120.00597 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99622 * 179.97438 * 19 18 17 22 22 S 1.81404 * 109.47098 * 180.02562 * 21 19 18 23 23 C 1.81403 * 101.91832 * 180.02562 * 22 21 19 24 24 O 1.42097 * 108.57636 * 294.48785 * 22 21 19 25 25 O 1.42099 * 108.57494 * 65.51556 * 22 21 19 26 26 C 1.38234 * 120.00312 * 0.25696 * 16 15 14 27 27 C 1.38239 * 119.99901 * 359.49432 * 26 16 15 28 28 H 1.09000 * 109.47306 * 299.99739 * 1 2 3 29 29 H 1.09000 * 109.47042 * 60.00116 * 1 2 3 30 30 H 1.08996 * 109.47022 * 180.02562 * 1 2 3 31 31 H 0.96999 * 120.00479 * 94.99975 * 4 2 1 32 32 H 0.96998 * 120.00099 * 180.02562 * 8 7 5 33 33 H 1.07996 * 120.00251 * 359.97438 * 14 13 2 34 34 H 1.07998 * 119.99981 * 179.97438 * 15 14 13 35 35 H 1.09002 * 109.47152 * 330.00052 * 17 16 15 36 36 H 1.09001 * 109.46980 * 210.00152 * 17 16 15 37 37 H 0.96996 * 119.99606 * 0.02562 * 18 17 16 38 38 H 1.09001 * 109.47380 * 300.00190 * 21 19 18 39 39 H 1.09002 * 109.47060 * 60.00278 * 21 19 18 40 40 H 1.08995 * 109.47346 * 60.00182 * 23 22 21 41 41 H 1.09009 * 109.46788 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47270 * 299.99418 * 23 22 21 43 43 H 1.07998 * 120.00015 * 179.72855 * 26 16 15 44 44 H 1.08001 * 119.99843 * 180.23314 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1491 -0.0075 2.3758 6 1 1.8927 1.0404 2.4242 7 6 2.6123 -0.6618 3.5090 8 7 2.9254 -1.9389 3.4499 9 14 2.7914 0.2702 5.1179 10 1 1.4692 0.8070 5.5289 11 1 3.3002 -0.6483 6.1681 12 1 3.7465 1.3926 4.9361 13 6 2.0324 -0.7103 -1.2305 14 6 2.4587 0.0195 -2.3242 15 6 2.9191 -0.6321 -3.4532 16 6 2.9534 -2.0135 -3.4881 17 6 3.4547 -2.7239 -4.7190 18 7 4.9000 -2.9351 -4.6064 19 6 5.5694 -3.5568 -5.5973 20 8 4.9753 -3.9410 -6.5824 21 6 7.0562 -3.7735 -5.4818 22 16 7.6596 -4.6288 -6.9634 23 6 9.4327 -4.7810 -6.6121 24 8 7.0918 -5.9310 -6.9972 25 8 7.4913 -3.7692 -8.0823 26 6 2.5225 -2.7435 -2.3961 27 6 2.0671 -2.0918 -1.2653 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.2491 -1.6318 1.1526 32 1 3.2487 -2.3961 4.2419 33 1 2.4315 1.0988 -2.2971 34 1 3.2518 -0.0618 -4.3079 35 1 3.2436 -2.1175 -5.5998 36 1 2.9529 -3.6871 -4.8123 37 1 5.3750 -2.6282 -3.8184 38 1 7.5577 -2.8102 -5.3892 39 1 7.2677 -4.3794 -4.6006 40 1 9.5739 -5.3578 -5.6981 41 1 9.9253 -5.2881 -7.4419 42 1 9.8647 -3.7882 -6.4857 43 1 2.5453 -3.8228 -2.4251 44 1 1.7340 -2.6621 -0.4107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717114679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:09 Heat of formation + Delta-G solvation = -67.182381 kcal Electronic energy + Delta-G solvation = -26169.801735 eV Core-core repulsion = 22215.012911 eV Total energy + Delta-G solvation = -3954.788823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 2.49 seconds Orbital eigenvalues (eV) -40.23785 -39.26536 -37.31416 -36.34591 -36.09426 -34.71574 -32.52686 -31.49625 -30.78170 -30.20736 -29.65082 -28.33058 -25.89825 -23.94434 -22.67804 -21.79519 -21.21928 -19.80631 -19.23268 -18.09428 -17.51410 -17.29681 -16.74877 -16.26652 -16.01539 -15.75818 -15.43956 -15.11059 -14.81928 -14.41240 -14.00965 -13.73499 -13.72739 -13.61493 -13.54246 -13.35375 -13.07917 -12.97372 -12.49030 -12.36738 -12.31173 -12.29860 -12.04247 -11.74820 -11.54618 -11.24473 -11.21271 -10.98201 -10.87752 -10.68062 -10.62822 -10.36745 -10.07148 -9.74050 -9.45730 -9.03585 -8.72321 -8.41318 -7.06464 -5.84861 -3.13827 -0.54390 1.36753 1.60670 2.08855 2.29560 2.70757 3.38367 3.42867 3.43553 3.43922 3.56833 3.95313 4.17410 4.18196 4.28943 4.52386 4.58513 4.59739 4.66283 4.90416 5.13179 5.13565 5.22920 5.31859 5.49177 5.50303 5.65039 5.71125 5.88869 5.95553 5.99571 6.17713 6.24478 6.28688 6.43940 6.55332 6.64210 6.69580 6.89243 7.01156 7.09216 7.19833 7.62198 7.67854 8.33492 9.44855 9.99971 10.35239 11.37674 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016615 B = 0.001990 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.826054 B =14068.661079 C =15148.581869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.203 3.797 3 H 0.056 0.944 4 N -0.721 5.721 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.012 4.012 8 N -0.933 5.933 9 Si 0.908 3.092 10 H -0.285 1.285 11 H -0.291 1.291 12 H -0.286 1.286 13 C -0.051 4.051 14 C -0.121 4.121 15 C -0.101 4.101 16 C -0.134 4.134 17 C 0.163 3.837 18 N -0.710 5.710 19 C 0.540 3.460 20 O -0.532 6.532 21 C -0.662 4.662 22 S 2.456 3.544 23 C -0.663 4.663 24 O -0.921 6.921 25 O -0.922 6.922 26 C -0.098 4.098 27 C -0.106 4.106 28 H 0.057 0.943 29 H 0.038 0.962 30 H 0.048 0.952 31 H 0.385 0.615 32 H 0.256 0.744 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.408 0.592 38 H 0.160 0.840 39 H 0.161 0.839 40 H 0.130 0.870 41 H 0.133 0.867 42 H 0.130 0.870 43 H 0.120 0.880 44 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.420 -2.681 -18.741 21.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.094 3.906 3 H 0.074 0.926 4 N -0.364 5.364 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.581 5.581 9 Si 0.739 3.261 10 H -0.212 1.212 11 H -0.217 1.217 12 H -0.213 1.213 13 C -0.053 4.053 14 C -0.140 4.140 15 C -0.120 4.120 16 C -0.134 4.134 17 C 0.041 3.959 18 N -0.362 5.362 19 C 0.324 3.676 20 O -0.409 6.409 21 C -0.789 4.789 22 S 2.633 3.367 23 C -0.812 4.812 24 O -0.918 6.918 25 O -0.919 6.919 26 C -0.117 4.117 27 C -0.124 4.124 28 H 0.077 0.923 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.220 0.780 32 H 0.066 0.934 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.243 0.757 38 H 0.178 0.822 39 H 0.179 0.821 40 H 0.149 0.851 41 H 0.152 0.848 42 H 0.148 0.852 43 H 0.138 0.862 44 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 9.520 -3.112 -19.994 22.363 hybrid contribution 0.999 0.656 2.337 2.625 sum 10.519 -2.456 -17.658 20.700 Atomic orbital electron populations 1.22424 0.98173 1.01211 1.00207 1.19259 0.92197 0.95005 0.84188 0.92590 1.42512 1.78244 1.10698 1.04909 1.19197 1.36825 0.93988 0.87162 0.91110 1.24742 1.01966 0.96007 0.98112 1.69646 1.50678 1.08671 1.29095 0.86256 0.77830 0.78593 0.83422 1.21213 1.21677 1.21254 1.20554 0.95016 0.94065 0.95628 1.21026 1.00006 0.99855 0.93113 1.20938 0.99560 0.93453 0.98051 1.19615 1.04373 0.93873 0.95568 1.20272 0.79067 1.00559 0.96000 1.46022 1.09527 1.59030 1.21589 1.19123 0.86706 0.78281 0.83521 1.90876 1.69295 1.50444 1.30295 1.30914 1.04080 1.17436 1.26483 1.07143 0.77515 0.75876 0.76209 1.30395 1.26119 1.11876 1.12798 1.93604 1.75484 1.37355 1.85399 1.93600 1.84767 1.68185 1.45379 1.21035 0.98293 0.99545 0.92793 1.21102 0.99105 0.94440 0.97750 0.92349 0.94278 0.93292 0.78009 0.93393 0.86053 0.86396 0.90320 0.90255 0.75685 0.82164 0.82076 0.85123 0.84845 0.85179 0.86233 0.85305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.79 9.47 37.16 0.35 -2.44 16 2 C 0.20 3.87 3.09 -69.08 -0.21 3.66 16 3 H 0.06 1.07 7.94 -51.93 -0.41 0.66 16 4 N -0.72 -17.26 5.07 -54.55 -0.28 -17.53 16 5 C -0.24 -6.43 9.93 -15.06 -0.15 -6.58 16 6 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.23 13.06 55.49 0.72 -26.51 16 9 Si 0.91 21.73 29.55 -169.99 -5.02 16.71 16 10 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 12 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 13 C -0.05 -0.84 4.95 -104.63 -0.52 -1.36 16 14 C -0.12 -1.67 9.67 -39.58 -0.38 -2.06 16 15 C -0.10 -1.20 9.70 -39.58 -0.38 -1.59 16 16 C -0.13 -1.57 5.25 -104.62 -0.55 -2.12 16 17 C 0.16 1.73 5.80 -5.19 -0.03 1.70 16 18 N -0.71 -6.65 5.55 -61.47 -0.34 -7.00 16 19 C 0.54 5.67 7.85 -10.99 -0.09 5.58 16 20 O -0.53 -7.89 15.62 2.55 0.04 -7.85 16 21 C -0.66 -3.49 6.29 36.01 0.23 -3.27 16 22 S 2.46 18.14 4.60 -107.50 -0.49 17.64 16 23 C -0.66 -1.61 10.62 101.05 1.07 -0.53 16 24 O -0.92 -10.93 17.95 -59.52 -1.07 -11.99 16 25 O -0.92 -10.75 17.95 -59.53 -1.07 -11.82 16 26 C -0.10 -1.29 9.70 -39.58 -0.38 -1.67 16 27 C -0.11 -1.68 9.06 -39.58 -0.36 -2.03 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.38 9.68 6.07 -40.82 -0.25 9.43 16 32 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 33 H 0.12 1.49 8.04 -52.49 -0.42 1.07 16 34 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 35 H 0.08 0.82 8.09 -51.93 -0.42 0.40 16 36 H 0.08 0.86 8.08 -51.93 -0.42 0.44 16 37 H 0.41 3.02 8.46 -40.82 -0.35 2.67 16 38 H 0.16 0.27 8.14 -51.92 -0.42 -0.16 16 39 H 0.16 0.31 8.14 -51.92 -0.42 -0.11 16 40 H 0.13 0.07 8.14 -51.93 -0.42 -0.35 16 41 H 0.13 0.28 8.14 -51.92 -0.42 -0.14 16 42 H 0.13 0.05 8.14 -51.92 -0.42 -0.37 16 43 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 44 H 0.13 2.22 6.92 -52.49 -0.36 1.86 16 LS Contribution 388.53 15.07 5.86 5.86 Total: -1.00 -38.69 388.53 -9.56 -48.24 By element: Atomic # 1 Polarization: 13.80 SS G_CDS: -6.40 Total: 7.39 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -1.50 Total: -13.15 kcal Atomic # 7 Polarization: -51.14 SS G_CDS: 0.11 Total: -51.03 kcal Atomic # 8 Polarization: -29.57 SS G_CDS: -2.10 Total: -31.66 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Atomic # 16 Polarization: 18.14 SS G_CDS: -0.49 Total: 17.64 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -38.69 -9.56 -48.24 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717114679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.940 kcal (2) G-P(sol) polarization free energy of solvation -38.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.242 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.182 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.49 seconds