Wall clock time and date at job start Wed Apr 1 2020 00:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47022 * 2 1 4 4 N 1.46496 * 109.47135 * 120.00332 * 2 1 3 5 5 C 1.36944 * 119.99765 * 275.00067 * 4 2 1 6 6 H 1.07994 * 120.00274 * 359.97438 * 5 4 2 7 7 C 1.38811 * 119.99927 * 180.02562 * 5 4 2 8 8 N 1.31624 * 120.00176 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00092 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47308 * 59.99923 * 9 7 5 11 11 H 1.48504 * 109.47444 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.47075 * 299.99884 * 9 7 5 13 13 C 1.50698 * 109.47156 * 240.00419 * 2 1 3 14 14 C 1.38227 * 120.00136 * 100.00031 * 13 2 1 15 15 C 1.38244 * 120.00133 * 180.02562 * 14 13 2 16 16 C 1.38232 * 119.99611 * 359.97438 * 15 14 13 17 17 C 1.50703 * 119.99860 * 179.97438 * 16 15 14 18 18 N 1.46505 * 109.47064 * 89.99969 * 17 16 15 19 19 C 1.34771 * 119.99622 * 179.97438 * 18 17 16 20 20 O 1.21280 * 120.00597 * 0.02562 * 19 18 17 21 21 C 1.50701 * 119.99622 * 179.97438 * 19 18 17 22 22 S 1.81404 * 109.47098 * 180.02562 * 21 19 18 23 23 C 1.81403 * 101.91832 * 180.02562 * 22 21 19 24 24 O 1.42097 * 108.57636 * 294.48785 * 22 21 19 25 25 O 1.42099 * 108.57494 * 65.51556 * 22 21 19 26 26 C 1.38234 * 120.00312 * 0.25696 * 16 15 14 27 27 C 1.38239 * 119.99901 * 359.49432 * 26 16 15 28 28 H 1.09000 * 109.47306 * 299.99739 * 1 2 3 29 29 H 1.09000 * 109.47042 * 60.00116 * 1 2 3 30 30 H 1.08996 * 109.47022 * 180.02562 * 1 2 3 31 31 H 0.96999 * 120.00479 * 94.99975 * 4 2 1 32 32 H 0.96998 * 120.00099 * 180.02562 * 8 7 5 33 33 H 1.07996 * 120.00251 * 359.97438 * 14 13 2 34 34 H 1.07998 * 119.99981 * 179.97438 * 15 14 13 35 35 H 1.09002 * 109.47152 * 330.00052 * 17 16 15 36 36 H 1.09001 * 109.46980 * 210.00152 * 17 16 15 37 37 H 0.96996 * 119.99606 * 0.02562 * 18 17 16 38 38 H 1.09001 * 109.47380 * 300.00190 * 21 19 18 39 39 H 1.09002 * 109.47060 * 60.00278 * 21 19 18 40 40 H 1.08995 * 109.47346 * 60.00182 * 23 22 21 41 41 H 1.09009 * 109.46788 * 180.02562 * 23 22 21 42 42 H 1.09002 * 109.47270 * 299.99418 * 23 22 21 43 43 H 1.07998 * 120.00015 * 179.72855 * 26 16 15 44 44 H 1.08001 * 119.99843 * 180.23314 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6907 1.1961 5 6 2.1491 -0.0075 2.3758 6 1 1.8927 1.0404 2.4242 7 6 2.6123 -0.6618 3.5090 8 7 2.9254 -1.9389 3.4499 9 14 2.7914 0.2702 5.1179 10 1 1.4692 0.8070 5.5289 11 1 3.3002 -0.6483 6.1681 12 1 3.7465 1.3926 4.9361 13 6 2.0324 -0.7103 -1.2305 14 6 2.4587 0.0195 -2.3242 15 6 2.9191 -0.6321 -3.4532 16 6 2.9534 -2.0135 -3.4881 17 6 3.4547 -2.7239 -4.7190 18 7 4.9000 -2.9351 -4.6064 19 6 5.5694 -3.5568 -5.5973 20 8 4.9753 -3.9410 -6.5824 21 6 7.0562 -3.7735 -5.4818 22 16 7.6596 -4.6288 -6.9634 23 6 9.4327 -4.7810 -6.6121 24 8 7.0918 -5.9310 -6.9972 25 8 7.4913 -3.7692 -8.0823 26 6 2.5225 -2.7435 -2.3961 27 6 2.0671 -2.0918 -1.2653 28 1 -0.3634 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 2.2491 -1.6318 1.1526 32 1 3.2487 -2.3961 4.2419 33 1 2.4315 1.0988 -2.2971 34 1 3.2518 -0.0618 -4.3079 35 1 3.2436 -2.1175 -5.5998 36 1 2.9529 -3.6871 -4.8123 37 1 5.3750 -2.6282 -3.8184 38 1 7.5577 -2.8102 -5.3892 39 1 7.2677 -4.3794 -4.6006 40 1 9.5739 -5.3578 -5.6981 41 1 9.9253 -5.2881 -7.4419 42 1 9.8647 -3.7882 -6.4857 43 1 2.5453 -3.8228 -2.4251 44 1 1.7340 -2.6621 -0.4107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717114679.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:05:02 Heat of formation + Delta-G solvation = -97.948184 kcal Electronic energy + Delta-G solvation = -26171.135840 eV Core-core repulsion = 22215.012911 eV Total energy + Delta-G solvation = -3956.122929 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 6.45 seconds Orbital eigenvalues (eV) -41.12616 -40.34876 -37.98181 -37.48941 -36.97576 -35.89126 -34.16670 -32.44222 -31.85799 -31.14234 -30.21527 -29.79233 -26.96475 -25.78497 -23.82890 -23.02688 -22.02178 -21.11635 -19.81750 -19.39127 -18.79402 -18.00781 -17.35738 -17.21555 -16.89242 -16.75819 -16.45930 -16.23573 -15.97009 -15.76518 -15.09856 -15.06382 -14.72077 -14.48807 -14.30861 -13.96505 -13.94523 -13.86602 -13.78193 -13.44143 -13.33726 -13.07497 -13.05615 -12.99616 -12.82905 -12.70611 -12.43434 -12.18961 -12.11479 -12.02059 -11.67766 -11.60492 -11.58806 -11.41764 -10.98832 -10.29272 -9.80044 -9.56865 -9.02163 -7.93645 -5.21959 -1.01977 0.29089 0.52435 1.34000 1.48153 1.50479 1.56396 1.85459 2.00121 2.56491 2.81997 3.01456 3.12640 3.40534 3.54019 3.64098 3.86434 3.96245 3.99773 4.04229 4.14719 4.14797 4.32846 4.34374 4.34915 4.53300 4.58945 4.65971 4.76849 4.78524 5.00394 5.02027 5.05794 5.11333 5.20845 5.21687 5.41244 5.50983 5.54880 5.61757 5.83604 6.08514 6.26878 6.28611 6.95963 7.34976 8.09426 8.33696 9.29630 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016615 B = 0.001990 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1684.826054 B =14068.661079 C =15148.581869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.199 3.801 3 H 0.056 0.944 4 N -0.734 5.734 5 C -0.239 4.239 6 H 0.077 0.923 7 C -0.075 4.075 8 N -0.969 5.969 9 Si 0.971 3.029 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.277 1.277 13 C -0.073 4.073 14 C -0.121 4.121 15 C -0.092 4.092 16 C -0.116 4.116 17 C 0.165 3.835 18 N -0.702 5.702 19 C 0.527 3.473 20 O -0.584 6.584 21 C -0.648 4.648 22 S 2.437 3.563 23 C -0.629 4.629 24 O -0.985 6.985 25 O -0.982 6.982 26 C -0.098 4.098 27 C -0.123 4.123 28 H 0.042 0.958 29 H 0.069 0.931 30 H 0.039 0.961 31 H 0.375 0.625 32 H 0.250 0.750 33 H 0.138 0.862 34 H 0.148 0.852 35 H 0.083 0.917 36 H 0.074 0.926 37 H 0.420 0.580 38 H 0.205 0.795 39 H 0.202 0.798 40 H 0.160 0.840 41 H 0.140 0.860 42 H 0.162 0.838 43 H 0.132 0.868 44 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.586 -1.167 -19.098 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.091 3.909 3 H 0.074 0.926 4 N -0.375 5.375 5 C -0.371 4.371 6 H 0.094 0.906 7 C -0.267 4.267 8 N -0.620 5.620 9 Si 0.800 3.200 10 H -0.206 1.206 11 H -0.224 1.224 12 H -0.203 1.203 13 C -0.074 4.074 14 C -0.139 4.139 15 C -0.110 4.110 16 C -0.117 4.117 17 C 0.042 3.958 18 N -0.354 5.354 19 C 0.313 3.687 20 O -0.465 6.465 21 C -0.776 4.776 22 S 2.622 3.378 23 C -0.783 4.783 24 O -0.982 6.982 25 O -0.979 6.979 26 C -0.116 4.116 27 C -0.142 4.142 28 H 0.061 0.939 29 H 0.088 0.912 30 H 0.058 0.942 31 H 0.208 0.792 32 H 0.059 0.941 33 H 0.156 0.844 34 H 0.166 0.834 35 H 0.101 0.899 36 H 0.092 0.908 37 H 0.257 0.743 38 H 0.222 0.778 39 H 0.219 0.781 40 H 0.179 0.821 41 H 0.158 0.842 42 H 0.181 0.819 43 H 0.150 0.850 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 11.635 -1.558 -20.393 23.531 hybrid contribution 0.365 0.214 2.368 2.406 sum 12.001 -1.343 -18.025 21.696 Atomic orbital electron populations 1.22272 0.96993 1.00848 1.00889 1.19416 0.92900 0.94781 0.83819 0.92616 1.42706 1.78483 1.10452 1.05886 1.19592 1.34975 0.94298 0.88231 0.90551 1.25517 1.02973 0.96892 1.01339 1.69804 1.52587 1.10160 1.29454 0.85248 0.77912 0.77344 0.79471 1.20612 1.22362 1.20332 1.20334 0.97240 0.94206 0.95590 1.21197 0.99327 1.00693 0.92675 1.21227 0.98087 0.93502 0.98166 1.19693 1.02871 0.93991 0.95118 1.20186 0.80036 1.00265 0.95346 1.45930 1.08978 1.58590 1.21870 1.19953 0.88839 0.77263 0.82648 1.90865 1.70922 1.52422 1.32318 1.30821 1.00280 1.20174 1.26362 1.07141 0.80001 0.74295 0.76373 1.30112 1.19049 1.14629 1.14470 1.93530 1.78329 1.39777 1.86551 1.93527 1.86712 1.68858 1.48843 1.21131 0.97868 1.00309 0.92314 1.20971 1.00700 0.94451 0.98068 0.93883 0.91236 0.94175 0.79187 0.94082 0.84367 0.83406 0.89900 0.90807 0.74258 0.77768 0.78115 0.82142 0.84157 0.81948 0.85031 0.87830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 162. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.21 9.47 71.98 0.68 -4.52 16 2 C 0.20 7.56 3.09 44.25 0.14 7.70 16 3 H 0.06 2.10 7.94 -2.39 -0.02 2.08 16 4 N -0.73 -35.80 5.07 -326.51 -1.66 -37.45 16 5 C -0.24 -12.88 9.93 84.03 0.83 -12.05 16 6 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 7 C -0.08 -4.20 5.50 84.86 0.47 -3.73 16 8 N -0.97 -57.94 13.06 21.65 0.28 -57.66 16 9 Si 0.97 45.01 29.55 68.60 2.03 47.04 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 11 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 12 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 13 C -0.07 -2.33 4.95 -19.87 -0.10 -2.43 16 14 C -0.12 -3.04 9.67 22.27 0.22 -2.82 16 15 C -0.09 -1.89 9.70 22.27 0.22 -1.67 16 16 C -0.12 -2.47 5.25 -19.87 -0.10 -2.57 16 17 C 0.16 3.18 5.80 85.63 0.50 3.68 16 18 N -0.70 -11.48 5.55 -466.78 -2.59 -14.07 16 19 C 0.53 10.25 7.85 87.66 0.69 10.94 16 20 O -0.58 -17.62 15.62 -0.15 0.00 -17.62 16 21 C -0.65 -4.75 6.29 71.24 0.45 -4.30 16 22 S 2.44 33.63 4.60 -56.49 -0.26 33.37 16 23 C -0.63 -0.40 10.62 113.37 1.20 0.80 16 24 O -0.98 -24.22 17.95 -125.75 -2.26 -26.48 16 25 O -0.98 -23.46 17.95 -125.74 -2.26 -25.72 16 26 C -0.10 -2.48 9.70 22.27 0.22 -2.27 16 27 C -0.12 -3.95 9.06 22.27 0.20 -3.75 16 28 H 0.04 1.58 8.14 -2.39 -0.02 1.57 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.37 19.57 6.07 -92.71 -0.56 19.01 16 32 H 0.25 14.59 8.31 -92.71 -0.77 13.82 16 33 H 0.14 2.98 8.04 -2.91 -0.02 2.95 16 34 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 35 H 0.08 1.58 8.09 -2.39 -0.02 1.56 16 36 H 0.07 1.54 8.08 -2.39 -0.02 1.52 16 37 H 0.42 4.81 8.46 -92.71 -0.78 4.03 16 38 H 0.21 -0.37 8.14 -2.39 -0.02 -0.39 16 39 H 0.20 -0.16 8.14 -2.39 -0.02 -0.18 16 40 H 0.16 -0.71 8.14 -2.39 -0.02 -0.73 16 41 H 0.14 0.10 8.14 -2.39 -0.02 0.08 16 42 H 0.16 -0.81 8.14 -2.39 -0.02 -0.83 16 43 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 44 H 0.10 3.79 6.92 -2.91 -0.02 3.77 16 Total: -1.00 -90.24 388.53 -1.43 -91.67 By element: Atomic # 1 Polarization: 24.25 SS G_CDS: -0.32 Total: 23.92 kcal Atomic # 6 Polarization: -22.61 SS G_CDS: 5.60 Total: -17.01 kcal Atomic # 7 Polarization: -105.22 SS G_CDS: -3.96 Total: -109.18 kcal Atomic # 8 Polarization: -65.30 SS G_CDS: -4.52 Total: -69.82 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 33.63 SS G_CDS: -0.26 Total: 33.37 kcal Total: -90.24 -1.43 -91.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717114679.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.273 kcal (2) G-P(sol) polarization free energy of solvation -90.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.45 seconds