Wall clock time and date at job start Wed Apr 1 2020 00:20:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09005 * 109.46939 * 2 1 4 4 N 1.46499 * 109.47206 * 239.99851 * 2 1 3 5 5 C 1.36941 * 119.99920 * 85.00205 * 4 2 1 6 6 H 1.08004 * 120.00020 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00178 * 180.02562 * 5 4 2 8 8 N 1.31625 * 119.99620 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00423 * 180.02562 * 7 5 4 10 10 H 1.48504 * 109.47060 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47565 * 119.99418 * 9 7 5 12 12 H 1.48498 * 109.47199 * 239.99983 * 9 7 5 13 13 C 1.52995 * 109.47011 * 119.99753 * 2 1 3 14 14 H 1.08997 * 109.51857 * 299.90184 * 13 2 1 15 15 C 1.52878 * 109.62461 * 179.90598 * 13 2 1 16 16 N 1.47152 * 108.60719 * 187.89881 * 15 13 2 17 17 C 1.34784 * 120.98278 * 230.50279 * 16 15 13 18 18 O 1.21283 * 119.99649 * 359.71768 * 17 16 15 19 19 C 1.50697 * 119.99774 * 179.44664 * 17 16 15 20 20 O 1.42905 * 109.47007 * 179.97438 * 19 17 16 21 21 C 1.36230 * 117.00262 * 179.97438 * 20 19 17 22 22 C 1.38662 * 122.58427 * 179.73671 * 21 20 19 23 23 C 1.33436 * 114.88005 * 179.76213 * 22 21 20 24 24 S 1.75865 * 109.66049 * 0.47620 * 23 22 21 25 25 C 1.33629 * 122.58307 * 0.02562 * 21 20 19 26 26 C 1.47159 * 118.03648 * 50.23000 * 16 15 13 27 27 C 1.53296 * 108.38013 * 309.71446 * 26 16 15 28 28 O 1.42959 * 109.22335 * 52.30255 * 27 26 16 29 29 H 1.08997 * 109.47070 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47406 * 300.00165 * 1 2 3 31 31 H 1.09003 * 109.46822 * 60.00396 * 1 2 3 32 32 H 0.97002 * 120.00177 * 264.99939 * 4 2 1 33 33 H 0.97004 * 119.99673 * 180.02562 * 8 7 5 34 34 H 1.09004 * 109.61943 * 68.08122 * 15 13 2 35 35 H 1.08998 * 109.52652 * 307.66606 * 15 13 2 36 36 H 1.09001 * 109.46809 * 299.99238 * 19 17 16 37 37 H 1.08993 * 109.47525 * 59.99679 * 19 17 16 38 38 H 1.07999 * 122.55898 * 359.97403 * 22 21 20 39 39 H 1.08007 * 125.16652 * 180.18906 * 23 22 21 40 40 H 1.07996 * 125.19764 * 359.97438 * 25 21 20 41 41 H 1.08998 * 109.67882 * 69.43880 * 26 16 15 42 42 H 1.08997 * 109.67949 * 189.95197 * 26 16 15 43 43 H 1.09002 * 109.50466 * 172.22804 * 27 26 16 44 44 H 1.08994 * 109.51326 * 292.32268 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1492 -0.0075 -2.3757 6 1 1.8920 1.0403 -2.4244 7 6 2.6114 -0.6619 -3.5093 8 7 2.9244 -1.9391 -3.4501 9 14 2.7906 0.2700 -5.1182 10 1 2.3767 1.6825 -4.9208 11 1 4.2074 0.2263 -5.5605 12 1 1.9294 -0.3577 -6.1524 13 6 2.0400 -0.7212 1.2492 14 1 1.6785 -0.2069 2.1397 15 6 3.5688 -0.7253 1.2516 16 7 4.0343 -1.5825 2.3533 17 6 4.9520 -1.1407 3.2361 18 8 5.4105 -0.0233 3.1260 19 6 5.4038 -2.0330 4.3634 20 8 6.3732 -1.3448 5.1564 21 6 6.8872 -2.0156 6.2248 22 6 7.8377 -1.4606 7.0681 23 6 8.2306 -2.2511 8.0687 24 16 7.3897 -3.7925 7.9701 25 6 6.5184 -3.2613 6.5377 26 6 3.4637 -2.9343 2.4665 27 6 1.9360 -2.8206 2.4080 28 8 1.5639 -2.0692 1.2502 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 2.2491 -1.6318 -1.1526 33 1 3.2478 -2.3963 -4.2421 34 1 3.9373 0.2904 1.3959 35 1 3.9335 -1.1172 0.3022 36 1 4.5472 -2.2964 4.9838 37 1 5.8481 -2.9399 3.9533 38 1 8.2276 -0.4632 6.9279 39 1 8.9583 -1.9865 8.8217 40 1 5.7954 -3.8515 5.9942 41 1 3.8177 -3.5524 1.6415 42 1 3.7632 -3.3810 3.4146 43 1 1.4988 -3.8175 2.3513 44 1 1.5741 -2.3147 3.3031 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717619053.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:20:10 Heat of formation + Delta-G solvation = -72.939118 kcal Electronic energy + Delta-G solvation = -27403.036786 eV Core-core repulsion = 23447.998332 eV Total energy + Delta-G solvation = -3955.038454 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.72121 -40.71238 -39.50160 -37.12645 -36.90196 -35.85489 -34.18730 -31.93273 -30.51534 -30.09691 -29.99853 -28.30259 -25.91676 -25.08838 -24.50754 -23.43922 -21.29082 -20.78218 -20.47637 -19.39586 -19.19516 -18.16988 -18.04004 -17.60702 -17.50909 -16.81763 -16.58966 -16.16768 -16.01287 -15.71519 -15.33881 -15.10618 -15.02651 -14.75940 -14.47059 -14.29865 -14.00779 -13.69260 -13.66262 -13.49674 -13.16559 -13.02250 -12.80643 -12.77949 -12.53661 -12.49766 -12.13455 -12.01904 -11.84283 -11.80956 -11.68842 -11.54831 -11.13398 -10.96715 -10.89661 -9.79795 -9.68371 -8.96895 -8.95024 -7.90452 -5.17211 0.01486 0.67538 0.99961 1.33511 1.38807 1.47496 1.48010 1.57418 1.71550 2.43448 2.57462 2.79705 3.23631 3.43606 3.67797 3.81964 3.92895 3.95740 3.97824 4.00059 4.02455 4.16526 4.27296 4.32716 4.35196 4.43399 4.50676 4.62415 4.76255 4.81747 4.85626 4.92530 4.94935 5.00953 5.09305 5.18326 5.22304 5.25500 5.54359 5.61105 6.08467 6.25160 6.27013 6.33202 6.90650 7.39041 8.14862 8.40381 9.32930 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020025 B = 0.002231 C = 0.002149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.949947 B =12545.704171 C =13024.183433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.172 3.828 3 H 0.057 0.943 4 N -0.725 5.725 5 C -0.233 4.233 6 H 0.075 0.925 7 C -0.076 4.076 8 N -0.966 5.966 9 Si 0.966 3.034 10 H -0.267 1.267 11 H -0.297 1.297 12 H -0.295 1.295 13 C 0.095 3.905 14 H 0.078 0.922 15 C 0.095 3.905 16 N -0.606 5.606 17 C 0.511 3.489 18 O -0.573 6.573 19 C 0.052 3.948 20 O -0.312 6.312 21 C 0.091 3.909 22 C -0.169 4.169 23 C -0.178 4.178 24 S 0.147 5.853 25 C -0.329 4.329 26 C 0.064 3.936 27 C 0.040 3.960 28 O -0.383 6.383 29 H 0.047 0.953 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.378 0.622 33 H 0.248 0.752 34 H 0.079 0.921 35 H 0.062 0.938 36 H 0.127 0.873 37 H 0.119 0.881 38 H 0.148 0.852 39 H 0.200 0.800 40 H 0.188 0.812 41 H 0.079 0.921 42 H 0.134 0.866 43 H 0.131 0.869 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.699 -7.216 27.572 28.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.063 3.937 3 H 0.075 0.925 4 N -0.367 5.367 5 C -0.365 4.365 6 H 0.092 0.908 7 C -0.268 4.268 8 N -0.618 5.618 9 Si 0.796 3.204 10 H -0.192 1.192 11 H -0.225 1.225 12 H -0.222 1.222 13 C 0.035 3.965 14 H 0.095 0.905 15 C -0.028 4.028 16 N -0.340 5.340 17 C 0.300 3.700 18 O -0.451 6.451 19 C -0.025 4.025 20 O -0.226 6.226 21 C 0.036 3.964 22 C -0.201 4.201 23 C -0.313 4.313 24 S 0.407 5.593 25 C -0.464 4.464 26 C -0.057 4.057 27 C -0.037 4.037 28 O -0.302 6.302 29 H 0.066 0.934 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.211 0.789 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.145 0.855 37 H 0.136 0.864 38 H 0.166 0.834 39 H 0.217 0.783 40 H 0.205 0.795 41 H 0.097 0.903 42 H 0.152 0.848 43 H 0.149 0.851 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 4.888 -7.676 28.034 29.474 hybrid contribution 0.312 1.439 -2.235 2.676 sum 5.200 -6.237 25.799 27.047 Atomic orbital electron populations 1.22164 0.96860 1.01205 1.00539 1.20510 0.93782 0.94592 0.84856 0.92475 1.42487 1.77970 1.10508 1.05689 1.19651 1.34368 0.94083 0.88375 0.90754 1.25459 1.03359 0.96849 1.01126 1.69831 1.52827 1.10047 1.29055 0.85169 0.76569 0.78263 0.80370 1.19187 1.22481 1.22243 1.22507 0.91113 0.84204 0.98653 0.90456 1.22007 0.95723 0.95956 0.89132 1.48162 1.41114 1.16764 1.27994 1.20727 0.78761 0.87427 0.83131 1.90724 1.56752 1.22637 1.75017 1.22567 0.93958 0.94552 0.91456 1.86154 1.56126 1.41967 1.38375 1.18169 0.96847 0.91671 0.89763 1.19670 1.00442 1.03454 0.96488 1.25892 1.05535 0.96948 1.02959 1.84110 1.36444 1.14917 1.23794 1.25685 1.13309 0.99933 1.07488 1.22853 0.95467 0.81873 1.05509 1.23247 0.93055 0.98619 0.88733 1.88079 1.75371 1.23425 1.43310 0.93432 0.91401 0.94354 0.78904 0.94288 0.90272 0.92017 0.85518 0.86356 0.83393 0.78327 0.79499 0.90315 0.84805 0.85084 0.91157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 9.35 71.98 0.67 -4.57 16 2 C 0.17 6.73 2.74 44.99 0.12 6.85 16 3 H 0.06 2.26 8.08 -2.38 -0.02 2.24 16 4 N -0.73 -36.21 4.29 -322.93 -1.38 -37.59 16 5 C -0.23 -12.90 9.93 84.03 0.83 -12.06 16 6 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 7 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 8 N -0.97 -59.43 13.06 21.65 0.28 -59.15 16 9 Si 0.97 46.95 29.55 68.60 2.03 48.98 16 10 H -0.27 -12.24 7.11 99.48 0.71 -11.54 16 11 H -0.30 -14.56 7.11 99.48 0.71 -13.85 16 12 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 13 C 0.09 3.08 2.51 30.55 0.08 3.15 16 14 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 15 C 0.09 3.34 5.85 86.21 0.50 3.85 16 16 N -0.61 -16.53 3.03 -818.13 -2.48 -19.00 16 17 C 0.51 14.77 7.79 87.65 0.68 15.45 16 18 O -0.57 -22.68 15.97 16.00 0.26 -22.43 16 19 C 0.05 0.99 3.72 71.24 0.26 1.25 16 20 O -0.31 -7.89 9.74 -77.14 -0.75 -8.65 16 21 C 0.09 1.83 6.64 21.33 0.14 1.97 16 22 C -0.17 -2.99 10.17 21.28 0.22 -2.77 16 23 C -0.18 -2.16 11.22 66.73 0.75 -1.41 16 24 S 0.15 1.68 23.34 -56.49 -1.32 0.37 16 25 C -0.33 -4.73 10.09 66.77 0.67 -4.06 16 26 C 0.06 1.18 6.55 86.35 0.57 1.74 16 27 C 0.04 0.77 6.98 72.08 0.50 1.28 16 28 O -0.38 -11.90 9.22 -148.98 -1.37 -13.27 16 29 H 0.05 1.76 7.68 -2.39 -0.02 1.74 16 30 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 31 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.38 20.52 7.20 -92.71 -0.67 19.85 16 33 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 34 H 0.08 3.04 7.08 -2.38 -0.02 3.02 16 35 H 0.06 2.65 7.25 -2.39 -0.02 2.63 16 36 H 0.13 1.43 7.38 -2.39 -0.02 1.41 16 37 H 0.12 1.58 7.72 -2.39 -0.02 1.56 16 38 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 39 H 0.20 1.16 8.06 -2.91 -0.02 1.14 16 40 H 0.19 1.69 7.02 -2.91 -0.02 1.67 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.13 1.10 6.05 -2.39 -0.01 1.08 16 43 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 44 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -78.18 375.13 2.09 -76.09 By element: Atomic # 1 Polarization: 27.55 SS G_CDS: 0.35 Total: 27.90 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: 6.47 Total: 6.76 kcal Atomic # 7 Polarization: -112.16 SS G_CDS: -3.58 Total: -115.74 kcal Atomic # 8 Polarization: -42.48 SS G_CDS: -1.87 Total: -44.35 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 2.03 Total: 48.98 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -1.32 Total: 0.37 kcal Total: -78.18 2.09 -76.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717619053.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.146 kcal (2) G-P(sol) polarization free energy of solvation -78.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds