Wall clock time and date at job start Wed Apr 1 2020 00:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35908 * 117.00340 * 2 1 4 4 C 1.38824 * 119.97734 * 359.97438 * 3 2 1 5 5 C 1.38348 * 120.22818 * 179.97438 * 4 3 2 6 6 Cl 1.73606 * 119.91104 * 180.02562 * 5 4 3 7 7 C 1.38128 * 120.17830 * 0.02771 * 5 4 3 8 8 C 1.39542 * 119.95187 * 359.97438 * 7 5 4 9 9 C 1.47869 * 120.11350 * 180.02562 * 8 7 5 10 10 O 1.21553 * 120.00090 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99621 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72373 * 11 9 8 13 13 H 1.08999 * 109.47480 * 35.27807 * 12 11 9 14 14 C 1.52999 * 109.47136 * 275.27771 * 12 11 9 15 15 C 1.52999 * 109.47493 * 155.28120 * 12 11 9 16 16 C 1.53008 * 109.46593 * 295.00052 * 15 12 11 17 17 C 1.53002 * 109.47094 * 179.97438 * 16 15 12 18 18 N 1.46495 * 109.47350 * 179.97438 * 17 16 15 19 19 C 1.36935 * 120.00308 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00024 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00033 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00347 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99869 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47416 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47250 * 120.00439 * 23 21 19 26 26 H 1.48507 * 109.47259 * 240.00223 * 23 21 19 27 27 C 1.38465 * 119.97489 * 180.29838 * 3 2 1 28 28 H 1.08997 * 109.47740 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47166 * 300.00093 * 1 2 3 30 30 H 1.09007 * 109.46774 * 60.00319 * 1 2 3 31 31 H 1.08008 * 119.88376 * 0.02562 * 4 3 2 32 32 H 1.08004 * 120.02307 * 180.02562 * 7 5 4 33 33 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 34 34 H 1.09006 * 109.47500 * 299.99940 * 14 12 11 35 35 H 1.08999 * 109.47488 * 60.00276 * 14 12 11 36 36 H 1.09005 * 109.47368 * 180.02562 * 14 12 11 37 37 H 1.08998 * 109.47257 * 54.99513 * 15 12 11 38 38 H 1.08993 * 109.47436 * 175.00131 * 15 12 11 39 39 H 1.08998 * 109.46879 * 299.99693 * 16 15 12 40 40 H 1.09001 * 109.47112 * 59.99648 * 16 15 12 41 41 H 1.09003 * 109.47046 * 300.00184 * 17 16 15 42 42 H 1.09002 * 109.46848 * 59.99557 * 17 16 15 43 43 H 0.97010 * 119.99841 * 0.02562 * 18 17 16 44 44 H 0.96999 * 120.00653 * 179.97438 * 22 21 19 45 45 H 1.07991 * 120.08897 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2896 2.3749 -0.0005 5 6 1.9124 3.6103 0.0000 6 17 0.9583 5.0607 0.0000 7 6 3.2912 3.6929 0.0005 8 6 4.0589 2.5276 0.0010 9 6 5.5352 2.6118 0.0021 10 8 6.2019 1.5954 0.0021 11 7 6.1414 3.8155 0.0031 12 6 7.6040 3.8989 0.0103 13 1 8.0176 3.0811 -0.5797 14 6 8.1135 3.7979 1.4495 15 6 8.0417 5.2352 -0.5929 16 6 7.6407 5.2841 -2.0687 17 6 8.0778 6.6206 -2.6719 18 7 7.6944 6.6672 -4.0850 19 6 7.9838 7.7746 -4.8368 20 1 8.4950 8.6134 -4.3880 21 6 7.6210 7.8185 -6.1759 22 7 6.9984 6.7961 -6.7230 23 14 8.0164 9.3288 -7.2015 24 1 8.7154 10.3312 -6.3577 25 1 8.8920 8.9411 -8.3366 26 1 6.7566 9.9148 -7.7260 27 6 3.4289 1.2827 -0.0062 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.2112 2.3159 -0.0005 32 1 3.7747 4.6586 0.0013 33 1 5.6094 4.6266 0.0035 34 1 7.7001 4.6158 2.0396 35 1 7.8018 2.8460 1.8793 36 1 9.2018 3.8604 1.4549 37 1 7.5571 6.0516 -0.0575 38 1 9.1236 5.3357 -0.5068 39 1 8.1252 4.4676 -2.6041 40 1 6.5588 5.1835 -2.1547 41 1 7.5929 7.4368 -2.1363 42 1 9.1597 6.7215 -2.5857 43 1 7.2349 5.9139 -4.4880 44 1 6.7445 6.8269 -7.6587 45 1 4.0180 0.3776 -0.0107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001717689331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:44 Heat of formation + Delta-G solvation = -56.362752 kcal Electronic energy + Delta-G solvation = -26345.830436 eV Core-core repulsion = 22389.467081 eV Total energy + Delta-G solvation = -3956.363355 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.89355 -39.80773 -37.91817 -36.91791 -36.44183 -34.86248 -32.78386 -31.73573 -31.18853 -30.26262 -29.31226 -27.78677 -25.71704 -24.44064 -23.00845 -22.88773 -21.23728 -20.78997 -20.60089 -19.00412 -17.21960 -17.00676 -16.71971 -16.52803 -16.24455 -16.09077 -15.21858 -15.04941 -14.68361 -14.51097 -14.20357 -14.08260 -13.83989 -13.63777 -13.44187 -13.00456 -12.80180 -12.72968 -12.45996 -12.29108 -12.20269 -12.10349 -11.65919 -11.40812 -11.32569 -11.22294 -11.13061 -10.86124 -10.80288 -10.46661 -10.40347 -10.12025 -9.97045 -9.67928 -9.39716 -9.14391 -8.85401 -8.73799 -6.89434 -5.74184 -3.02895 0.32512 0.78373 1.66247 2.51716 2.63117 3.08558 3.40765 3.44401 3.49658 3.52216 4.20434 4.39999 4.53872 4.57194 4.63777 4.70663 4.72223 4.76992 4.88269 5.00686 5.03623 5.11488 5.14230 5.41874 5.53835 5.59315 5.60024 5.62108 5.66398 5.77126 5.79363 5.91219 6.00559 6.06189 6.10694 6.20644 6.36436 6.41903 6.42460 6.81941 6.87834 6.91107 7.33543 7.72070 8.02642 8.44774 9.55615 10.14834 10.48997 11.48825 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009526 B = 0.002539 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.522226 B =11026.262011 C =12549.783557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.308 6.308 3 C 0.135 3.865 4 C -0.180 4.180 5 C -0.001 4.001 6 Cl -0.056 7.056 7 C -0.114 4.114 8 C -0.079 4.079 9 C 0.563 3.437 10 O -0.530 6.530 11 N -0.713 5.713 12 C 0.141 3.859 13 H 0.092 0.908 14 C -0.163 4.163 15 C -0.123 4.123 16 C -0.127 4.127 17 C 0.153 3.847 18 N -0.735 5.735 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.016 4.016 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.291 1.291 26 H -0.292 1.292 27 C -0.088 4.088 28 H 0.104 0.896 29 H 0.058 0.942 30 H 0.059 0.941 31 H 0.143 0.857 32 H 0.141 0.859 33 H 0.401 0.599 34 H 0.056 0.944 35 H 0.059 0.941 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.081 0.919 39 H 0.063 0.937 40 H 0.061 0.939 41 H 0.016 0.984 42 H 0.017 0.983 43 H 0.383 0.617 44 H 0.254 0.746 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.026 -11.303 20.815 27.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.222 6.222 3 C 0.089 3.911 4 C -0.200 4.200 5 C -0.028 4.028 6 Cl -0.027 7.027 7 C -0.133 4.133 8 C -0.083 4.083 9 C 0.349 3.651 10 O -0.408 6.408 11 N -0.364 5.364 12 C 0.037 3.963 13 H 0.110 0.890 14 C -0.221 4.221 15 C -0.162 4.162 16 C -0.165 4.165 17 C 0.025 3.975 18 N -0.379 5.379 19 C -0.370 4.370 20 H 0.088 0.912 21 C -0.212 4.212 22 N -0.582 5.582 23 Si 0.738 3.262 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.108 4.108 28 H 0.123 0.877 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.161 0.839 32 H 0.159 0.841 33 H 0.237 0.763 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.099 0.901 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.034 0.966 42 H 0.035 0.965 43 H 0.217 0.783 44 H 0.064 0.936 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -12.454 -11.911 20.765 26.984 hybrid contribution -0.704 1.339 -0.859 1.740 sum -13.158 -10.572 19.906 26.099 Atomic orbital electron populations 1.23164 0.77806 1.04522 1.01672 1.86140 1.21807 1.25749 1.88455 1.18652 0.91795 0.84166 0.96518 1.21260 1.01057 0.90580 1.07090 1.20461 0.91611 0.87830 1.02893 1.98407 1.71710 1.35816 1.96727 1.21130 0.91759 0.98870 1.01551 1.19646 0.93397 0.92720 1.02510 1.17977 0.86645 0.83913 0.76589 1.90791 1.65704 1.34808 1.49467 1.46023 1.08098 1.07922 1.74397 1.21113 0.78742 0.99610 0.96833 0.89012 1.22180 1.01530 1.02189 0.96196 1.21863 1.02273 0.95404 0.96628 1.21747 1.01371 0.99414 0.93922 1.20645 0.96697 0.93603 0.86519 1.42391 1.70585 1.19726 1.05165 1.19283 1.30968 0.94952 0.91767 0.91170 1.24755 1.01435 0.97932 0.97045 1.69673 1.45652 1.30309 1.12572 0.86121 0.77454 0.82283 0.80370 1.20568 1.21866 1.21874 1.20571 0.91281 0.98583 1.00326 0.87732 0.92347 0.92217 0.83896 0.84118 0.76303 0.92453 0.92226 0.91369 0.91354 0.90072 0.91856 0.92062 0.96577 0.96492 0.78324 0.93580 0.83050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.12 9.81 101.05 0.99 1.11 16 2 O -0.31 -2.78 10.49 -19.45 -0.20 -2.99 16 3 C 0.13 1.32 6.68 -39.28 -0.26 1.06 16 4 C -0.18 -1.58 8.81 -39.32 -0.35 -1.92 16 5 C 0.00 -0.01 6.31 -39.58 -0.25 -0.26 16 6 Cl -0.06 -0.52 28.95 -51.86 -1.50 -2.02 16 7 C -0.11 -1.12 9.32 -39.14 -0.36 -1.48 16 8 C -0.08 -0.89 5.87 -104.99 -0.62 -1.51 16 9 C 0.56 7.19 7.74 -12.32 -0.10 7.09 16 10 O -0.53 -8.41 16.01 5.32 0.09 -8.33 16 11 N -0.71 -7.80 4.48 -54.74 -0.25 -8.04 16 12 C 0.14 1.57 2.57 -67.93 -0.17 1.40 16 13 H 0.09 1.20 7.58 -51.93 -0.39 0.81 16 14 C -0.16 -1.56 9.48 37.16 0.35 -1.20 16 15 C -0.12 -1.41 4.75 -26.73 -0.13 -1.54 16 16 C -0.13 -1.98 5.22 -26.73 -0.14 -2.12 16 17 C 0.15 3.06 6.26 -4.04 -0.03 3.03 16 18 N -0.73 -19.04 5.60 -59.91 -0.34 -19.38 16 19 C -0.24 -6.81 9.99 -15.06 -0.15 -6.96 16 20 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 21 C -0.02 -0.46 5.50 -17.43 -0.10 -0.56 16 22 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 23 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 27 C -0.09 -0.98 9.53 -39.02 -0.37 -1.35 16 28 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.22 7.66 -51.93 -0.40 -0.17 16 30 H 0.06 0.26 7.66 -51.92 -0.40 -0.14 16 31 H 0.14 0.93 6.28 -52.48 -0.33 0.60 16 32 H 0.14 1.17 6.40 -52.48 -0.34 0.83 16 33 H 0.40 3.65 6.63 -40.82 -0.27 3.38 16 34 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 38 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 40 H 0.06 0.97 7.75 -51.93 -0.40 0.57 16 41 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.38 10.49 7.67 -40.82 -0.31 10.18 16 44 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 45 H 0.15 1.72 7.65 -52.49 -0.40 1.32 16 LS Contribution 392.00 15.07 5.91 5.91 Total: -1.00 -34.11 392.00 -8.86 -42.97 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -6.59 Total: 7.46 kcal Atomic # 6 Polarization: -3.55 SS G_CDS: -1.68 Total: -5.22 kcal Atomic # 7 Polarization: -55.61 SS G_CDS: 0.14 Total: -55.46 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: -0.12 Total: -11.31 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.50 Total: -2.02 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.11 -8.86 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717689331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.388 kcal (2) G-P(sol) polarization free energy of solvation -34.113 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds