Wall clock time and date at job start Wed Apr 1 2020 00:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35908 * 117.00340 * 2 1 4 4 C 1.38824 * 119.97734 * 359.97438 * 3 2 1 5 5 C 1.38348 * 120.22818 * 179.97438 * 4 3 2 6 6 Cl 1.73606 * 119.91104 * 180.02562 * 5 4 3 7 7 C 1.38128 * 120.17830 * 0.02771 * 5 4 3 8 8 C 1.39542 * 119.95187 * 359.97438 * 7 5 4 9 9 C 1.47869 * 120.11350 * 180.02562 * 8 7 5 10 10 O 1.21553 * 120.00090 * 180.02562 * 9 8 7 11 11 N 1.34777 * 119.99621 * 0.02562 * 9 8 7 12 12 C 1.46499 * 119.99665 * 179.72373 * 11 9 8 13 13 H 1.08999 * 109.47480 * 35.27807 * 12 11 9 14 14 C 1.52999 * 109.47136 * 275.27771 * 12 11 9 15 15 C 1.52999 * 109.47493 * 155.28120 * 12 11 9 16 16 C 1.53008 * 109.46593 * 295.00052 * 15 12 11 17 17 C 1.53002 * 109.47094 * 179.97438 * 16 15 12 18 18 N 1.46495 * 109.47350 * 179.97438 * 17 16 15 19 19 C 1.36935 * 120.00308 * 179.97438 * 18 17 16 20 20 H 1.08003 * 120.00024 * 0.02562 * 19 18 17 21 21 C 1.38810 * 120.00033 * 179.97438 * 19 18 17 22 22 N 1.31619 * 120.00347 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99869 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47416 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47250 * 120.00439 * 23 21 19 26 26 H 1.48507 * 109.47259 * 240.00223 * 23 21 19 27 27 C 1.38465 * 119.97489 * 180.29838 * 3 2 1 28 28 H 1.08997 * 109.47740 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47166 * 300.00093 * 1 2 3 30 30 H 1.09007 * 109.46774 * 60.00319 * 1 2 3 31 31 H 1.08008 * 119.88376 * 0.02562 * 4 3 2 32 32 H 1.08004 * 120.02307 * 180.02562 * 7 5 4 33 33 H 0.97001 * 120.00485 * 0.02562 * 11 9 8 34 34 H 1.09006 * 109.47500 * 299.99940 * 14 12 11 35 35 H 1.08999 * 109.47488 * 60.00276 * 14 12 11 36 36 H 1.09005 * 109.47368 * 180.02562 * 14 12 11 37 37 H 1.08998 * 109.47257 * 54.99513 * 15 12 11 38 38 H 1.08993 * 109.47436 * 175.00131 * 15 12 11 39 39 H 1.08998 * 109.46879 * 299.99693 * 16 15 12 40 40 H 1.09001 * 109.47112 * 59.99648 * 16 15 12 41 41 H 1.09003 * 109.47046 * 300.00184 * 17 16 15 42 42 H 1.09002 * 109.46848 * 59.99557 * 17 16 15 43 43 H 0.97010 * 119.99841 * 0.02562 * 18 17 16 44 44 H 0.96999 * 120.00653 * 179.97438 * 22 21 19 45 45 H 1.07991 * 120.08897 * 359.97438 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2109 0.0000 4 6 1.2896 2.3749 -0.0005 5 6 1.9124 3.6103 0.0000 6 17 0.9583 5.0607 0.0000 7 6 3.2912 3.6929 0.0005 8 6 4.0589 2.5276 0.0010 9 6 5.5352 2.6118 0.0021 10 8 6.2019 1.5954 0.0021 11 7 6.1414 3.8155 0.0031 12 6 7.6040 3.8989 0.0103 13 1 8.0176 3.0811 -0.5797 14 6 8.1135 3.7979 1.4495 15 6 8.0417 5.2352 -0.5929 16 6 7.6407 5.2841 -2.0687 17 6 8.0778 6.6206 -2.6719 18 7 7.6944 6.6672 -4.0850 19 6 7.9838 7.7746 -4.8368 20 1 8.4950 8.6134 -4.3880 21 6 7.6210 7.8185 -6.1759 22 7 6.9984 6.7961 -6.7230 23 14 8.0164 9.3288 -7.2015 24 1 8.7154 10.3312 -6.3577 25 1 8.8920 8.9411 -8.3366 26 1 6.7566 9.9148 -7.7260 27 6 3.4289 1.2827 -0.0062 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 0.2112 2.3159 -0.0005 32 1 3.7747 4.6586 0.0013 33 1 5.6094 4.6266 0.0035 34 1 7.7001 4.6158 2.0396 35 1 7.8018 2.8460 1.8793 36 1 9.2018 3.8604 1.4549 37 1 7.5571 6.0516 -0.0575 38 1 9.1236 5.3357 -0.5068 39 1 8.1252 4.4676 -2.6041 40 1 6.5588 5.1835 -2.1547 41 1 7.5929 7.4368 -2.1363 42 1 9.1597 6.7215 -2.5857 43 1 7.2349 5.9139 -4.4880 44 1 6.7445 6.8269 -7.6587 45 1 4.0180 0.3776 -0.0107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717689331.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:43 Heat of formation + Delta-G solvation = -78.178110 kcal Electronic energy + Delta-G solvation = -26346.776421 eV Core-core repulsion = 22389.467081 eV Total energy + Delta-G solvation = -3957.309340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.70519 -40.65890 -38.66243 -37.99123 -37.28772 -36.52672 -34.26019 -33.00700 -32.06963 -31.38147 -30.53940 -28.28600 -27.23402 -25.43364 -24.58641 -23.71952 -22.45700 -21.99700 -21.53616 -19.79642 -19.11295 -18.03179 -17.52864 -17.30997 -16.93526 -16.83158 -16.63325 -16.12999 -16.03094 -15.63400 -15.37796 -15.30700 -15.00901 -14.83940 -14.49695 -14.31909 -13.84779 -13.43833 -13.42990 -13.20716 -13.11929 -12.99682 -12.88345 -12.80356 -12.37684 -12.31559 -12.22095 -12.11682 -12.04637 -11.87676 -11.85152 -11.71118 -11.48983 -11.14352 -10.93815 -10.27030 -10.01787 -9.47190 -8.99843 -7.95344 -5.24581 -0.48467 0.01657 0.90995 1.47052 1.48234 1.58399 1.62719 1.90221 2.33116 2.55567 2.55961 3.38488 3.41267 3.64997 3.71694 3.82049 3.95857 3.97831 4.07616 4.12328 4.24800 4.29929 4.36568 4.37759 4.42457 4.60110 4.68234 4.73023 4.84206 4.85484 4.87680 4.89619 4.94746 4.97809 5.02650 5.13033 5.22943 5.33406 5.36581 5.44406 5.51589 5.54711 6.18936 6.27284 6.43105 7.08666 7.32692 8.10331 8.31977 9.28648 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009526 B = 0.002539 C = 0.002231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2938.522226 B =11026.262011 C =12549.783557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 O -0.325 6.325 3 C 0.134 3.866 4 C -0.171 4.171 5 C -0.007 4.007 6 Cl -0.050 7.050 7 C -0.113 4.113 8 C -0.090 4.090 9 C 0.560 3.440 10 O -0.570 6.570 11 N -0.704 5.704 12 C 0.142 3.858 13 H 0.068 0.932 14 C -0.155 4.155 15 C -0.110 4.110 16 C -0.115 4.115 17 C 0.150 3.850 18 N -0.751 5.751 19 C -0.244 4.244 20 H 0.078 0.922 21 C -0.080 4.080 22 N -0.972 5.972 23 Si 0.975 3.025 24 H -0.264 1.264 25 H -0.294 1.294 26 H -0.292 1.292 27 C -0.105 4.105 28 H 0.123 0.877 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.168 0.832 32 H 0.155 0.845 33 H 0.411 0.589 34 H 0.074 0.926 35 H 0.044 0.956 36 H 0.081 0.919 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.046 0.954 40 H 0.057 0.943 41 H 0.027 0.973 42 H 0.020 0.980 43 H 0.371 0.629 44 H 0.251 0.749 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.736 -9.818 22.122 27.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 O -0.239 6.239 3 C 0.088 3.912 4 C -0.190 4.190 5 C -0.034 4.034 6 Cl -0.021 7.021 7 C -0.133 4.133 8 C -0.094 4.094 9 C 0.348 3.652 10 O -0.450 6.450 11 N -0.356 5.356 12 C 0.038 3.962 13 H 0.087 0.913 14 C -0.213 4.213 15 C -0.148 4.148 16 C -0.153 4.153 17 C 0.024 3.976 18 N -0.393 5.393 19 C -0.376 4.376 20 H 0.096 0.904 21 C -0.272 4.272 22 N -0.623 5.623 23 Si 0.804 3.196 24 H -0.188 1.188 25 H -0.221 1.221 26 H -0.219 1.219 27 C -0.124 4.124 28 H 0.141 0.859 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.185 0.815 32 H 0.173 0.827 33 H 0.249 0.751 34 H 0.093 0.907 35 H 0.063 0.937 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.065 0.935 40 H 0.076 0.924 41 H 0.045 0.955 42 H 0.038 0.962 43 H 0.203 0.797 44 H 0.060 0.940 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -13.158 -10.386 22.123 27.757 hybrid contribution -0.539 0.841 -1.213 1.571 sum -13.697 -9.546 20.909 26.757 Atomic orbital electron populations 1.23496 0.75671 1.06244 1.02767 1.86130 1.24053 1.25435 1.88265 1.18642 0.91388 0.84954 0.96199 1.21493 1.02239 0.89791 1.05501 1.20557 0.91602 0.88328 1.02893 1.98410 1.71460 1.35531 1.96704 1.21244 0.92046 0.98890 1.01071 1.19517 0.92545 0.93360 1.03930 1.18245 0.87299 0.83786 0.75911 1.90764 1.66630 1.36109 1.51522 1.45992 1.08243 1.07893 1.73447 1.21067 0.78744 0.98596 0.97750 0.91335 1.22108 1.02419 1.02055 0.94735 1.21768 1.03305 0.96159 0.93537 1.21614 1.00877 0.96411 0.96367 1.20864 0.96805 0.96146 0.83819 1.42673 1.70548 1.18703 1.07416 1.19711 1.29910 0.95695 0.92287 0.90442 1.25622 1.02096 1.01001 0.98453 1.69834 1.47359 1.32465 1.12599 0.85052 0.77025 0.79048 0.78514 1.18807 1.22118 1.21938 1.20595 0.92196 0.98258 1.01378 0.85891 0.90895 0.91365 0.81464 0.82726 0.75069 0.90749 0.93680 0.90029 0.89172 0.88773 0.93516 0.92448 0.95537 0.96170 0.79735 0.94041 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.81 113.37 1.11 1.21 16 2 O -0.33 -5.67 10.49 -92.52 -0.97 -6.64 16 3 C 0.13 2.58 6.68 22.46 0.15 2.73 16 4 C -0.17 -2.74 8.81 22.44 0.20 -2.54 16 5 C -0.01 -0.12 6.31 22.27 0.14 0.02 16 6 Cl -0.05 -0.84 28.95 -2.72 -0.08 -0.92 16 7 C -0.11 -2.14 9.32 22.56 0.21 -1.93 16 8 C -0.09 -2.05 5.87 -20.10 -0.12 -2.17 16 9 C 0.56 14.67 7.74 86.79 0.67 15.34 16 10 O -0.57 -18.98 16.01 -3.88 -0.06 -19.04 16 11 N -0.70 -15.00 4.48 -445.39 -2.00 -17.00 16 12 C 0.14 3.05 2.57 44.99 0.12 3.16 16 13 H 0.07 1.82 7.58 -2.39 -0.02 1.80 16 14 C -0.16 -2.71 9.48 71.98 0.68 -2.03 16 15 C -0.11 -2.28 4.75 30.60 0.15 -2.13 16 16 C -0.11 -3.50 5.22 30.60 0.16 -3.34 16 17 C 0.15 5.81 6.26 86.38 0.54 6.35 16 18 N -0.75 -38.94 5.60 -343.46 -1.92 -40.86 16 19 C -0.24 -13.84 9.99 84.03 0.84 -13.00 16 20 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 21 C -0.08 -4.66 5.50 84.86 0.47 -4.19 16 22 N -0.97 -60.68 13.06 21.65 0.28 -60.40 16 23 Si 0.97 46.55 29.55 68.60 2.03 48.57 16 24 H -0.26 -11.73 7.11 99.48 0.71 -11.02 16 25 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 26 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 27 C -0.10 -2.41 9.53 22.63 0.22 -2.19 16 28 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 29 H 0.07 0.39 7.66 -2.39 -0.02 0.38 16 30 H 0.07 0.45 7.66 -2.38 -0.02 0.43 16 31 H 0.17 1.76 6.28 -2.91 -0.02 1.75 16 32 H 0.16 2.35 6.40 -2.91 -0.02 2.33 16 33 H 0.41 6.91 6.63 -92.71 -0.61 6.29 16 34 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 36 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 37 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 38 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 39 H 0.05 1.57 8.14 -2.39 -0.02 1.56 16 40 H 0.06 1.79 7.75 -2.39 -0.02 1.77 16 41 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 42 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.37 20.69 7.67 -92.70 -0.71 19.98 16 44 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 45 H 0.14 3.45 7.65 -2.92 -0.02 3.43 16 Total: -1.00 -74.11 392.00 2.50 -71.60 By element: Atomic # 1 Polarization: 29.69 SS G_CDS: -0.31 Total: 29.39 kcal Atomic # 6 Polarization: -10.23 SS G_CDS: 5.53 Total: -4.70 kcal Atomic # 7 Polarization: -114.62 SS G_CDS: -3.64 Total: -118.26 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: -1.03 Total: -25.68 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 2.03 Total: 48.57 kcal Atomic # 17 Polarization: -0.84 SS G_CDS: -0.08 Total: -0.92 kcal Total: -74.11 2.50 -71.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717689331.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.573 kcal (2) G-P(sol) polarization free energy of solvation -74.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds