Wall clock time and date at job start Wed Apr 1 2020 00:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46903 * 2 1 4 4 C 1.52997 * 109.47603 * 120.00211 * 2 1 3 5 5 C 1.50708 * 109.47127 * 295.00547 * 4 2 1 6 6 C 1.34506 * 125.79179 * 90.01288 * 5 4 2 7 7 C 1.41388 * 106.83998 * 179.97438 * 6 5 4 8 8 C 1.34515 * 106.83843 * 359.97438 * 7 6 5 9 9 O 1.34304 * 108.42331 * 0.02562 * 8 7 6 10 10 C 1.50703 * 109.47087 * 240.00340 * 2 1 3 11 11 O 1.21279 * 120.00109 * 239.99342 * 10 2 1 12 12 N 1.34777 * 119.99923 * 60.00051 * 10 2 1 13 13 C 1.46500 * 119.99947 * 179.97438 * 12 10 2 14 14 C 1.52997 * 109.47068 * 179.97438 * 13 12 10 15 15 N 1.46499 * 109.47077 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99956 * 180.02562 * 15 14 13 17 17 O 1.21274 * 120.00415 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99543 * 179.97438 * 16 15 14 19 19 S 1.81006 * 109.46697 * 179.97438 * 18 16 15 20 20 C 1.76200 * 99.99954 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00227 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00192 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00063 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99699 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47309 * 90.00090 * 24 22 20 26 26 H 1.48496 * 109.46813 * 210.00265 * 24 22 20 27 27 H 1.48503 * 109.47061 * 329.99876 * 24 22 20 28 28 H 1.09000 * 109.47039 * 299.99699 * 1 2 3 29 29 H 1.09002 * 109.47077 * 59.99969 * 1 2 3 30 30 H 1.09005 * 109.46903 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47369 * 174.99998 * 4 2 1 32 32 H 1.09005 * 109.46999 * 54.99815 * 4 2 1 33 33 H 1.08000 * 126.58117 * 359.96027 * 6 5 4 34 34 H 1.08001 * 126.57691 * 180.26094 * 7 6 5 35 35 H 1.07998 * 125.78442 * 180.02562 * 8 7 6 36 36 H 0.97003 * 119.99976 * 359.97438 * 12 10 2 37 37 H 1.09000 * 109.46921 * 300.00051 * 13 12 10 38 38 H 1.09005 * 109.46879 * 59.99630 * 13 12 10 39 39 H 1.08996 * 109.46959 * 299.99718 * 14 13 12 40 40 H 1.08992 * 109.47169 * 59.99950 * 14 13 12 41 41 H 0.97003 * 120.00067 * 359.97438 * 15 14 13 42 42 H 1.08998 * 109.47624 * 299.99384 * 18 16 15 43 43 H 1.09000 * 109.47256 * 60.00152 * 18 16 15 44 44 H 0.97004 * 119.99713 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 6 0.5011 -0.1013 3.1724 7 6 0.5399 0.8264 4.2387 8 6 1.7018 1.4955 4.1310 9 8 2.3648 1.0254 3.0618 10 6 2.0323 -0.7104 -1.2305 11 8 2.7297 -1.6964 -1.1193 12 7 1.7067 -0.2498 -2.4546 13 6 2.1955 -0.9400 -3.6508 14 6 1.6849 -0.2191 -4.9000 15 7 2.1732 -0.9097 -6.0962 16 6 1.8475 -0.4492 -7.3203 17 8 1.1498 0.5365 -7.4316 18 6 2.3503 -1.1593 -8.5507 19 16 1.7461 -0.3065 -10.0286 20 6 2.4634 -1.3181 -11.2803 21 1 3.0677 -2.1700 -11.0057 22 6 2.2527 -1.0195 -12.6193 23 7 2.7889 -1.7750 -13.5544 24 14 1.2079 0.4544 -13.0944 25 1 2.0732 1.6547 -13.2195 26 1 0.5389 0.1888 -14.3932 27 1 0.1811 0.6911 -12.0480 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1264 -0.7995 1.2055 32 1 1.6055 -1.7199 1.2951 33 1 -0.2919 -0.8022 2.9576 34 1 -0.2161 0.9671 4.9971 35 1 2.0435 2.2780 4.7922 36 1 1.1488 0.5387 -2.5435 37 1 3.2855 -0.9396 -3.6506 38 1 1.8326 -1.9679 -3.6510 39 1 0.5949 -0.2200 -4.8999 40 1 2.0474 0.8088 -4.9000 41 1 2.7315 -1.6979 -6.0073 42 1 3.4403 -1.1588 -8.5507 43 1 1.9874 -2.1871 -8.5509 44 1 2.6413 -1.5665 -14.4902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001720021940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:30 Heat of formation + Delta-G solvation = -71.997056 kcal Electronic energy + Delta-G solvation = -25115.458359 eV Core-core repulsion = 21160.460756 eV Total energy + Delta-G solvation = -3954.997603 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.01660 -40.41184 -39.35015 -36.28998 -35.55892 -34.10751 -33.29415 -32.45933 -30.90947 -30.07472 -28.09405 -27.12076 -25.64004 -24.30844 -22.70902 -22.15380 -21.11135 -20.60213 -20.21579 -18.13050 -17.90993 -17.32819 -16.81414 -16.45206 -16.34698 -15.94349 -15.70841 -15.61460 -14.98663 -14.93450 -14.80192 -14.18539 -14.00302 -13.76089 -13.37724 -13.34722 -13.25067 -13.05037 -12.96317 -12.81928 -12.52148 -12.37901 -12.14257 -11.84293 -11.81017 -11.59132 -11.29228 -11.02842 -10.65006 -10.34288 -10.25668 -9.88533 -9.64344 -9.56054 -9.14437 -9.01737 -8.88819 -8.53770 -6.94985 -6.30848 -4.03167 1.27646 2.15878 2.19100 2.38822 2.60184 2.86861 2.87598 3.30807 3.36896 3.48331 3.65265 4.05436 4.19401 4.30797 4.32030 4.34816 4.50574 4.60496 4.68237 4.70544 4.72783 4.79018 5.07288 5.08252 5.09938 5.16112 5.21694 5.24532 5.39691 5.46781 5.51344 5.52993 5.59872 5.63819 5.70921 5.72691 5.90966 5.97627 6.06971 6.36073 6.71207 6.98138 7.46895 7.74303 7.92122 8.37333 8.39931 9.15180 10.78370 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.043307 B = 0.001381 C = 0.001358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.386940 B =20273.341388 C =20612.004022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.107 4.107 3 H 0.103 0.897 4 C -0.022 4.022 5 C -0.008 4.008 6 C -0.207 4.207 7 C -0.214 4.214 8 C -0.044 4.044 9 O -0.176 6.176 10 C 0.522 3.478 11 O -0.536 6.536 12 N -0.725 5.725 13 C 0.108 3.892 14 C 0.111 3.889 15 N -0.735 5.735 16 C 0.533 3.467 17 O -0.518 6.518 18 C -0.124 4.124 19 S -0.141 6.141 20 C -0.523 4.523 21 H 0.089 0.911 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.236 1.236 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.148 0.852 34 H 0.147 0.853 35 H 0.202 0.798 36 H 0.404 0.596 37 H 0.077 0.923 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.403 0.597 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.904 4.296 35.909 36.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.128 4.128 3 H 0.121 0.879 4 C -0.060 4.060 5 C -0.058 4.058 6 C -0.227 4.227 7 C -0.233 4.233 8 C -0.111 4.111 9 O -0.072 6.072 10 C 0.308 3.692 11 O -0.412 6.412 12 N -0.378 5.378 13 C -0.016 4.016 14 C -0.014 4.014 15 N -0.390 5.390 16 C 0.319 3.681 17 O -0.392 6.392 18 C -0.275 4.275 19 S 0.085 5.915 20 C -0.670 4.670 21 H 0.107 0.893 22 C -0.112 4.112 23 N -0.516 5.516 24 Si 0.682 3.318 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.160 1.160 28 H 0.093 0.907 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.110 0.890 32 H 0.120 0.880 33 H 0.166 0.834 34 H 0.165 0.835 35 H 0.218 0.782 36 H 0.239 0.761 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.091 0.909 40 H 0.091 0.909 41 H 0.237 0.763 42 H 0.117 0.883 43 H 0.117 0.883 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.258 5.278 35.482 36.125 hybrid contribution 0.266 -0.579 -0.153 0.655 sum -3.992 4.699 35.329 35.863 Atomic orbital electron populations 1.21901 0.92195 1.03244 1.03407 1.21284 0.98271 1.01185 0.92073 0.87881 1.19927 1.03394 0.96796 0.85846 1.22372 0.92266 0.93104 0.98040 1.21627 0.99398 1.03808 0.97825 1.21862 0.99608 0.99941 1.01905 1.24053 0.93629 1.02331 0.91099 1.84036 1.44429 1.43100 1.35635 1.20491 0.79891 0.84484 0.84369 1.90738 1.37587 1.26154 1.86747 1.45788 1.54154 1.32472 1.05374 1.21473 1.00148 0.96847 0.83168 1.21326 0.99955 0.96753 0.83353 1.45763 1.55434 1.32896 1.04942 1.20298 0.79696 0.84312 0.83762 1.90704 1.36584 1.25628 1.86283 1.23280 1.04753 1.03555 0.95915 1.84784 1.68873 1.41413 0.96453 1.22315 1.37126 1.15845 0.91727 0.89338 1.24709 0.94813 0.96479 0.95243 1.69939 1.42956 1.38127 1.00593 0.86736 0.82247 0.82950 0.79916 1.19198 1.19907 1.15952 0.90733 0.91704 0.91658 0.89000 0.87981 0.83426 0.83483 0.78160 0.76077 0.90517 0.90507 0.90884 0.90891 0.76283 0.88316 0.88275 0.91914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 8.80 37.16 0.33 -0.33 16 2 C -0.11 -0.61 2.71 -91.77 -0.25 -0.86 16 3 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 4 C -0.02 -0.15 4.57 -27.88 -0.13 -0.27 16 5 C -0.01 -0.05 6.05 -35.62 -0.22 -0.27 16 6 C -0.21 -1.34 9.41 -39.70 -0.37 -1.72 16 7 C -0.21 -1.28 10.91 -39.70 -0.43 -1.71 16 8 C -0.04 -0.25 12.09 29.42 0.36 0.10 16 9 O -0.18 -1.40 10.65 5.70 0.06 -1.34 16 10 C 0.52 4.23 7.15 -10.98 -0.08 4.15 16 11 O -0.54 -6.37 15.92 5.56 0.09 -6.28 16 12 N -0.73 -4.78 5.45 -60.29 -0.33 -5.11 16 13 C 0.11 0.82 5.79 -4.04 -0.02 0.80 16 14 C 0.11 1.02 5.79 -4.04 -0.02 1.00 16 15 N -0.73 -8.40 5.56 -60.30 -0.34 -8.74 16 16 C 0.53 8.93 7.85 -10.98 -0.09 8.84 16 17 O -0.52 -10.62 15.86 5.56 0.09 -10.54 16 18 C -0.12 -2.31 6.16 36.01 0.22 -2.09 16 19 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 20 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 21 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 22 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 23 N -0.88 -26.37 13.97 55.49 0.78 -25.59 16 24 Si 0.86 21.55 27.74 -169.99 -4.71 16.84 16 25 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 28 H 0.07 0.33 6.41 -51.93 -0.33 0.00 16 29 H 0.06 0.22 7.56 -51.93 -0.39 -0.17 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.09 0.69 7.95 -51.93 -0.41 0.28 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.15 0.74 8.06 -52.49 -0.42 0.31 16 34 H 0.15 0.60 8.06 -52.49 -0.42 0.17 16 35 H 0.20 0.47 8.06 -52.49 -0.42 0.04 16 36 H 0.40 1.76 7.89 -40.82 -0.32 1.44 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.40 3.53 8.47 -40.82 -0.35 3.18 16 42 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 43 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 44 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 389.54 15.07 5.87 5.87 Total: -1.00 -36.83 389.54 -7.44 -44.27 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.46 Total: 0.38 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: -0.49 Total: -4.24 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.11 Total: -39.44 kcal Atomic # 8 Polarization: -18.39 SS G_CDS: 0.24 Total: -18.16 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.71 Total: 16.84 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -36.83 -7.44 -44.27 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720021940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.728 kcal (2) G-P(sol) polarization free energy of solvation -36.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds