Wall clock time and date at job start Wed Apr 1 2020 00:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09005 * 109.46903 * 2 1 4 4 C 1.52997 * 109.47603 * 120.00211 * 2 1 3 5 5 C 1.50708 * 109.47127 * 295.00547 * 4 2 1 6 6 C 1.34506 * 125.79179 * 90.01288 * 5 4 2 7 7 C 1.41388 * 106.83998 * 179.97438 * 6 5 4 8 8 C 1.34515 * 106.83843 * 359.97438 * 7 6 5 9 9 O 1.34304 * 108.42331 * 0.02562 * 8 7 6 10 10 C 1.50703 * 109.47087 * 240.00340 * 2 1 3 11 11 O 1.21279 * 120.00109 * 239.99342 * 10 2 1 12 12 N 1.34777 * 119.99923 * 60.00051 * 10 2 1 13 13 C 1.46500 * 119.99947 * 179.97438 * 12 10 2 14 14 C 1.52997 * 109.47068 * 179.97438 * 13 12 10 15 15 N 1.46499 * 109.47077 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99956 * 180.02562 * 15 14 13 17 17 O 1.21274 * 120.00415 * 359.97438 * 16 15 14 18 18 C 1.50704 * 119.99543 * 179.97438 * 16 15 14 19 19 S 1.81006 * 109.46697 * 179.97438 * 18 16 15 20 20 C 1.76200 * 99.99954 * 179.97438 * 19 18 16 21 21 H 1.08001 * 120.00227 * 359.97438 * 20 19 18 22 22 C 1.38800 * 120.00192 * 180.02562 * 20 19 18 23 23 N 1.31630 * 120.00063 * 179.97438 * 22 20 19 24 24 Si 1.86803 * 119.99699 * 359.97438 * 22 20 19 25 25 H 1.48497 * 109.47309 * 90.00090 * 24 22 20 26 26 H 1.48496 * 109.46813 * 210.00265 * 24 22 20 27 27 H 1.48503 * 109.47061 * 329.99876 * 24 22 20 28 28 H 1.09000 * 109.47039 * 299.99699 * 1 2 3 29 29 H 1.09002 * 109.47077 * 59.99969 * 1 2 3 30 30 H 1.09005 * 109.46903 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47369 * 174.99998 * 4 2 1 32 32 H 1.09005 * 109.46999 * 54.99815 * 4 2 1 33 33 H 1.08000 * 126.58117 * 359.96027 * 6 5 4 34 34 H 1.08001 * 126.57691 * 180.26094 * 7 6 5 35 35 H 1.07998 * 125.78442 * 180.02562 * 8 7 6 36 36 H 0.97003 * 119.99976 * 359.97438 * 12 10 2 37 37 H 1.09000 * 109.46921 * 300.00051 * 13 12 10 38 38 H 1.09005 * 109.46879 * 59.99630 * 13 12 10 39 39 H 1.08996 * 109.46959 * 299.99718 * 14 13 12 40 40 H 1.08992 * 109.47169 * 59.99950 * 14 13 12 41 41 H 0.97003 * 120.00067 * 359.97438 * 15 14 13 42 42 H 1.08998 * 109.47624 * 299.99384 * 18 16 15 43 43 H 1.09000 * 109.47256 * 60.00152 * 18 16 15 44 44 H 0.97004 * 119.99713 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 1.6414 0.0569 2.4766 6 6 0.5011 -0.1013 3.1724 7 6 0.5399 0.8264 4.2387 8 6 1.7018 1.4955 4.1310 9 8 2.3648 1.0254 3.0618 10 6 2.0323 -0.7104 -1.2305 11 8 2.7297 -1.6964 -1.1193 12 7 1.7067 -0.2498 -2.4546 13 6 2.1955 -0.9400 -3.6508 14 6 1.6849 -0.2191 -4.9000 15 7 2.1732 -0.9097 -6.0962 16 6 1.8475 -0.4492 -7.3203 17 8 1.1498 0.5365 -7.4316 18 6 2.3503 -1.1593 -8.5507 19 16 1.7461 -0.3065 -10.0286 20 6 2.4634 -1.3181 -11.2803 21 1 3.0677 -2.1700 -11.0057 22 6 2.2527 -1.0195 -12.6193 23 7 2.7889 -1.7750 -13.5544 24 14 1.2079 0.4544 -13.0944 25 1 2.0732 1.6547 -13.2195 26 1 0.5389 0.1888 -14.3932 27 1 0.1811 0.6911 -12.0480 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1264 -0.7995 1.2055 32 1 1.6055 -1.7199 1.2951 33 1 -0.2919 -0.8022 2.9576 34 1 -0.2161 0.9671 4.9971 35 1 2.0435 2.2780 4.7922 36 1 1.1488 0.5387 -2.5435 37 1 3.2855 -0.9396 -3.6506 38 1 1.8326 -1.9679 -3.6510 39 1 0.5949 -0.2200 -4.8999 40 1 2.0474 0.8088 -4.9000 41 1 2.7315 -1.6979 -6.0073 42 1 3.4403 -1.1588 -8.5507 43 1 1.9874 -2.1871 -8.5509 44 1 2.6413 -1.5665 -14.4902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001720021940.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:30 Heat of formation + Delta-G solvation = -99.025541 kcal Electronic energy + Delta-G solvation = -25116.630402 eV Core-core repulsion = 21160.460756 eV Total energy + Delta-G solvation = -3956.169646 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.48679 -41.10806 -40.58735 -37.10904 -36.14644 -35.06866 -34.66407 -33.76318 -31.84579 -30.88770 -29.08326 -27.83562 -27.54439 -24.95943 -23.39070 -22.61458 -22.01805 -21.40602 -20.83267 -19.91690 -18.58279 -18.08380 -17.80834 -17.25420 -17.13685 -17.09958 -16.84470 -16.59803 -16.45962 -15.70156 -15.60863 -15.45407 -14.92860 -14.76183 -14.66275 -14.63653 -13.85534 -13.73810 -13.68124 -13.46554 -13.37844 -13.33834 -13.02661 -12.94598 -12.87001 -12.77008 -12.62541 -12.26022 -12.06736 -11.86252 -11.16466 -11.14285 -10.88130 -10.78672 -10.53531 -10.27003 -10.14178 -9.34333 -8.98864 -8.50927 -6.21869 0.80962 0.98430 1.32442 1.45666 1.53260 1.53791 1.55919 1.71874 1.86845 2.15110 2.25568 2.52424 2.74799 2.87578 3.52819 3.62836 3.75201 3.90252 3.90811 4.01735 4.06104 4.18387 4.24828 4.29877 4.34366 4.39907 4.49096 4.63216 4.75864 4.82141 4.85728 4.86949 4.98684 5.03355 5.08677 5.22707 5.27736 5.29254 5.38277 5.65362 5.71143 6.12214 6.25335 6.37981 6.45259 6.94276 7.13379 7.15746 8.61493 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.043307 B = 0.001381 C = 0.001358 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.386940 B =20273.341388 C =20612.004022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 H 0.114 0.886 4 C -0.019 4.019 5 C -0.023 4.023 6 C -0.211 4.211 7 C -0.227 4.227 8 C -0.047 4.047 9 O -0.196 6.196 10 C 0.522 3.478 11 O -0.577 6.577 12 N -0.715 5.715 13 C 0.118 3.882 14 C 0.116 3.884 15 N -0.712 5.712 16 C 0.539 3.461 17 O -0.559 6.559 18 C -0.114 4.114 19 S -0.174 6.174 20 C -0.531 4.531 21 H 0.062 0.938 22 C 0.046 3.954 23 N -0.918 5.918 24 Si 0.915 3.085 25 H -0.262 1.262 26 H -0.260 1.260 27 H -0.235 1.235 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.159 0.841 34 H 0.165 0.835 35 H 0.231 0.769 36 H 0.417 0.583 37 H 0.075 0.925 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.074 0.926 41 H 0.419 0.581 42 H 0.114 0.886 43 H 0.115 0.885 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.892 5.367 37.736 38.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.119 4.119 3 H 0.131 0.869 4 C -0.056 4.056 5 C -0.073 4.073 6 C -0.230 4.230 7 C -0.246 4.246 8 C -0.114 4.114 9 O -0.093 6.093 10 C 0.309 3.691 11 O -0.456 6.456 12 N -0.368 5.368 13 C -0.007 4.007 14 C -0.009 4.009 15 N -0.366 5.366 16 C 0.325 3.675 17 O -0.437 6.437 18 C -0.264 4.264 19 S 0.053 5.947 20 C -0.678 4.678 21 H 0.080 0.920 22 C -0.159 4.159 23 N -0.556 5.556 24 Si 0.737 3.263 25 H -0.187 1.187 26 H -0.184 1.184 27 H -0.159 1.159 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.095 0.905 32 H 0.119 0.881 33 H 0.177 0.823 34 H 0.182 0.818 35 H 0.247 0.753 36 H 0.255 0.745 37 H 0.093 0.907 38 H 0.095 0.905 39 H 0.094 0.906 40 H 0.093 0.907 41 H 0.256 0.744 42 H 0.133 0.867 43 H 0.133 0.867 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.243 6.336 37.340 38.235 hybrid contribution 0.638 -0.987 -0.540 1.293 sum -4.605 5.349 36.800 37.471 Atomic orbital electron populations 1.21886 0.90870 1.03365 1.04184 1.21239 0.99175 1.01079 0.90391 0.86852 1.19858 1.02430 0.96961 0.86388 1.22444 0.92700 0.93612 0.98553 1.21876 0.99404 1.03941 0.97784 1.22181 1.00257 0.99878 1.02260 1.24732 0.93485 1.02572 0.90606 1.84024 1.45231 1.43556 1.36489 1.20873 0.79116 0.83917 0.85153 1.90723 1.39536 1.28071 1.87312 1.45698 1.53803 1.32633 1.04696 1.21305 0.99986 0.96670 0.82744 1.21400 1.00113 0.96712 0.82641 1.45508 1.54239 1.32883 1.04002 1.19876 0.79438 0.83685 0.84550 1.90696 1.38705 1.27386 1.86894 1.23282 1.05640 1.03715 0.93802 1.84673 1.69316 1.42059 0.98679 1.22481 1.36664 1.15506 0.93191 0.91994 1.25571 0.95970 0.99077 0.95324 1.70022 1.44443 1.39890 1.01216 0.85859 0.80780 0.79682 0.79999 1.18697 1.18419 1.15926 0.90523 0.90333 0.91873 0.90504 0.88097 0.82319 0.81760 0.75256 0.74542 0.90669 0.90492 0.90585 0.90733 0.74417 0.86738 0.86672 0.91387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.80 71.98 0.63 -0.37 16 2 C -0.10 -1.00 2.71 -11.54 -0.03 -1.03 16 3 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 4 C -0.02 -0.24 4.57 29.85 0.14 -0.11 16 5 C -0.02 -0.32 6.05 24.83 0.15 -0.17 16 6 C -0.21 -2.51 9.41 22.19 0.21 -2.30 16 7 C -0.23 -2.36 10.91 22.19 0.24 -2.12 16 8 C -0.05 -0.48 12.09 66.97 0.81 0.33 16 9 O -0.20 -2.99 10.65 -2.51 -0.03 -3.02 16 10 C 0.52 7.85 7.15 87.66 0.63 8.48 16 11 O -0.58 -13.48 15.92 -3.03 -0.05 -13.53 16 12 N -0.72 -8.00 5.45 -463.05 -2.52 -10.53 16 13 C 0.12 1.54 5.79 86.38 0.50 2.04 16 14 C 0.12 1.85 5.79 86.38 0.50 2.35 16 15 N -0.71 -14.49 5.56 -463.08 -2.57 -17.06 16 16 C 0.54 17.03 7.85 87.66 0.69 17.72 16 17 O -0.56 -22.18 15.86 -3.01 -0.05 -22.22 16 18 C -0.11 -4.06 6.16 71.24 0.44 -3.62 16 19 S -0.17 -8.56 18.55 -56.49 -1.05 -9.60 16 20 C -0.53 -30.54 10.04 67.95 0.68 -29.86 16 21 H 0.06 3.76 8.03 -2.91 -0.02 3.74 16 22 C 0.05 2.67 5.50 84.86 0.47 3.14 16 23 N -0.92 -55.58 13.97 21.65 0.30 -55.28 16 24 Si 0.91 44.42 27.74 68.60 1.90 46.32 16 25 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 26 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 27 H -0.24 -11.35 6.74 99.48 0.67 -10.67 16 28 H 0.08 0.54 6.41 -2.39 -0.02 0.52 16 29 H 0.08 0.33 7.56 -2.39 -0.02 0.31 16 30 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 31 H 0.08 1.21 7.95 -2.39 -0.02 1.19 16 32 H 0.10 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 34 H 0.16 1.01 8.06 -2.91 -0.02 0.99 16 35 H 0.23 0.58 8.06 -2.91 -0.02 0.55 16 36 H 0.42 2.58 7.89 -92.71 -0.73 1.85 16 37 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.08 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.42 6.12 8.47 -92.71 -0.79 5.34 16 42 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 43 H 0.12 3.77 8.14 -2.40 -0.02 3.75 16 44 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -80.17 389.54 1.47 -78.71 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -0.52 Total: 11.73 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: 6.05 Total: -5.52 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -4.79 Total: -82.87 kcal Atomic # 8 Polarization: -38.65 SS G_CDS: -0.12 Total: -38.77 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.90 Total: 46.32 kcal Atomic # 16 Polarization: -8.56 SS G_CDS: -1.05 Total: -9.60 kcal Total: -80.17 1.47 -78.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001720021940.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.318 kcal (2) G-P(sol) polarization free energy of solvation -80.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds