Wall clock time and date at job start Tue Mar 31 2020 23:53:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47044 * 327.60747 * 3 2 1 5 5 C 1.42905 * 113.99778 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46728 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46953 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99692 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00146 * 180.02562 * 7 6 5 10 10 C 1.46964 * 120.59098 * 359.71704 * 9 7 6 11 11 C 1.53810 * 108.39454 * 124.76573 * 10 9 7 12 12 N 1.46963 * 108.58476 * 49.63232 * 11 10 9 13 13 C 1.34777 * 120.59341 * 124.62361 * 12 11 10 14 14 O 1.21283 * 119.99732 * 180.02562 * 13 12 11 15 15 C 1.50699 * 119.99809 * 0.02833 * 13 12 11 16 16 S 1.81001 * 109.46912 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00214 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99510 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00051 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00375 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99656 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47082 * 90.00022 * 21 19 17 23 23 H 1.48502 * 109.46763 * 209.99767 * 21 19 17 24 24 H 1.48495 * 109.47186 * 329.99282 * 21 19 17 25 25 C 1.46965 * 118.81298 * 304.65087 * 12 11 10 26 26 C 1.46963 * 120.59386 * 180.02562 * 9 7 6 27 27 H 4.38443 * 5.44458 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47005 * 207.60807 * 3 2 1 29 29 H 1.08997 * 109.46973 * 87.61000 * 3 2 1 30 30 H 1.09000 * 109.47187 * 300.00233 * 5 4 3 31 31 H 1.09001 * 109.46558 * 60.00281 * 5 4 3 32 32 H 1.09000 * 109.47486 * 300.00062 * 6 5 4 33 33 H 1.09001 * 109.47362 * 60.00784 * 6 5 4 34 34 H 1.09007 * 109.60758 * 244.54076 * 10 9 7 35 35 H 1.08995 * 109.61269 * 5.05699 * 10 9 7 36 36 H 1.09006 * 109.73960 * 289.84025 * 11 10 9 37 37 H 1.08998 * 109.67495 * 169.39121 * 11 10 9 38 38 H 1.08995 * 109.47570 * 299.99477 * 15 13 12 39 39 H 1.09001 * 109.47599 * 59.99842 * 15 13 12 40 40 H 0.97004 * 120.00194 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.60777 * 295.48035 * 25 12 11 42 42 H 1.08997 * 109.60914 * 174.96922 * 25 12 11 43 43 H 1.09005 * 109.60869 * 354.94635 * 26 9 7 44 44 H 1.08994 * 109.61102 * 115.28296 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.1368 0.7218 5 6 4.5474 -1.2317 0.7817 6 6 4.9424 -2.4794 1.5742 7 6 6.4448 -2.5792 1.6380 8 8 7.1319 -1.7352 1.1027 9 7 7.0249 -3.6063 2.2899 10 6 6.2049 -4.6329 2.9484 11 6 6.6197 -6.0096 2.4020 12 7 8.0835 -6.1197 2.4722 13 6 8.6636 -7.1463 3.1250 14 8 9.8727 -7.2264 3.1766 15 6 7.8099 -8.1947 3.7905 16 16 8.8743 -9.4304 4.5755 17 6 7.6509 -10.5013 5.2544 18 1 6.6028 -10.2811 5.1144 19 6 8.0340 -11.6272 5.9699 20 7 9.3112 -11.8953 6.1409 21 14 6.7368 -12.7622 6.6902 22 1 6.3937 -13.8137 5.6993 23 1 7.2653 -13.3980 7.9238 24 1 5.5203 -11.9771 7.0203 25 6 8.9035 -5.0901 1.8185 26 6 8.4887 -3.7162 2.3607 27 1 -1.0498 -0.0004 0.0000 28 1 3.0089 0.9115 0.4762 29 1 3.0093 -0.0420 -1.0267 30 1 4.9499 -1.3002 -0.2290 31 1 4.9501 -0.3464 1.2739 32 1 4.5400 -2.4104 2.5849 33 1 4.5398 -3.3649 1.0824 34 1 6.3710 -4.5986 4.0252 35 1 5.1517 -4.4540 2.7322 36 1 6.2947 -6.1077 1.3661 37 1 6.1643 -6.7958 3.0041 38 1 7.1801 -7.7247 4.5459 39 1 7.1811 -8.6793 3.0436 40 1 9.5790 -12.6824 6.6407 41 1 8.7412 -5.1227 0.7412 42 1 9.9564 -5.2672 2.0379 43 1 8.9441 -2.9316 1.7563 44 1 8.8135 -3.6151 3.3962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001736632453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:52 Heat of formation + Delta-G solvation = -47.027991 kcal Electronic energy + Delta-G solvation = -26080.120776 eV Core-core repulsion = 22126.205913 eV Total energy + Delta-G solvation = -3953.914863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.75880 -39.44466 -38.47956 -37.02227 -34.17823 -33.94628 -32.60139 -32.47196 -31.36831 -29.47619 -27.88370 -27.15528 -25.54091 -24.53460 -23.81755 -22.39758 -20.26156 -19.05508 -18.62586 -18.04431 -17.46545 -16.94682 -16.83566 -16.31720 -16.17357 -15.79520 -15.76266 -15.47807 -15.29978 -14.84314 -14.41711 -14.08135 -13.98274 -13.80001 -13.34594 -13.24411 -13.15601 -12.77185 -12.54084 -12.17797 -12.03189 -11.98317 -11.80619 -11.69773 -11.54127 -11.10063 -11.06507 -11.00832 -10.92760 -10.79588 -10.19977 -10.05167 -9.85362 -9.51792 -9.41485 -9.10755 -8.48050 -8.28334 -6.55573 -6.25790 -3.97139 1.95583 2.21739 2.33545 2.45410 2.88464 2.94344 3.19353 3.22065 3.27087 3.40342 3.51051 3.97648 4.15558 4.18828 4.41637 4.50446 4.53422 4.64019 4.74713 4.83052 4.84260 4.88764 4.94364 5.02790 5.07014 5.09787 5.26283 5.28365 5.33443 5.33959 5.44310 5.46185 5.52167 5.64988 5.72042 5.79233 6.01840 6.08669 6.44352 6.58969 6.95034 7.09144 7.40300 7.55130 7.74024 8.30552 8.43336 9.19521 10.81551 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.001958 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.832987 B =14299.725133 C =16002.699754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.195 4.195 3 C 0.175 3.825 4 O -0.386 6.386 5 C 0.078 3.922 6 C -0.140 4.140 7 C 0.522 3.478 8 O -0.543 6.543 9 N -0.610 5.610 10 C 0.089 3.911 11 C 0.094 3.906 12 N -0.622 5.622 13 C 0.536 3.464 14 O -0.513 6.513 15 C -0.152 4.152 16 S -0.060 6.060 17 C -0.536 4.536 18 H 0.073 0.927 19 C 0.074 3.926 20 N -0.867 5.867 21 Si 0.919 3.081 22 H -0.277 1.277 23 H -0.282 1.282 24 H -0.272 1.272 25 C 0.101 3.899 26 C 0.098 3.902 27 H 0.222 0.778 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.269 0.731 41 H 0.069 0.931 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.004 22.584 -11.319 28.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.195 4.195 3 C 0.099 3.901 4 O -0.306 6.306 5 C 0.001 3.999 6 C -0.180 4.180 7 C 0.311 3.689 8 O -0.421 6.421 9 N -0.344 5.344 10 C -0.035 4.035 11 C -0.031 4.031 12 N -0.359 5.359 13 C 0.324 3.676 14 O -0.386 6.386 15 C -0.302 4.302 16 S 0.167 5.833 17 C -0.685 4.685 18 H 0.091 0.909 19 C -0.135 4.135 20 N -0.502 5.502 21 Si 0.745 3.255 22 H -0.203 1.203 23 H -0.207 1.207 24 H -0.197 1.197 25 C -0.023 4.023 26 C -0.025 4.025 27 H 0.239 0.761 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.123 0.877 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.118 0.882 36 H 0.092 0.908 37 H 0.122 0.878 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.125 0.875 43 H 0.122 0.878 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.786 22.643 -11.354 27.938 hybrid contribution -2.393 -0.590 0.360 2.491 sum -14.179 22.053 -10.993 28.429 Atomic orbital electron populations 1.25006 0.95930 0.98305 0.99744 1.22540 0.93900 1.01873 1.01216 1.19045 0.84661 0.89495 0.96871 1.87871 1.21589 1.45601 1.75521 1.22159 0.79883 0.97509 1.00302 1.21505 0.92477 1.00357 1.03689 1.20372 0.90100 0.80794 0.77669 1.90711 1.65314 1.39976 1.46083 1.48051 1.07361 1.25153 1.53792 1.22372 0.95711 0.87264 0.98183 1.22176 0.81109 0.97344 1.02437 1.48064 1.06279 1.25825 1.55766 1.20396 0.88738 0.81192 0.77278 1.90703 1.14411 1.74867 1.58643 1.23559 1.03592 1.00172 1.02900 1.85449 1.09103 1.22123 1.66644 1.22847 0.93950 1.11684 1.39975 0.90902 1.24990 0.96040 0.97014 0.95496 1.70012 1.14742 1.26716 1.38716 0.86169 0.80663 0.80142 0.78535 1.20256 1.20742 1.19675 1.21912 0.97780 0.85903 0.96711 1.22076 0.79461 0.98221 1.02744 0.76112 0.90607 0.90590 0.91937 0.91972 0.87713 0.87657 0.90008 0.88234 0.90818 0.87769 0.89174 0.89173 0.92135 0.91306 0.87537 0.87827 0.90631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.15 19.25 29.55 0.57 -0.58 16 2 C -0.20 -1.58 13.73 -37.12 -0.51 -2.09 16 3 C 0.17 1.18 6.41 34.37 0.22 1.40 16 4 O -0.39 -3.27 10.30 -35.23 -0.36 -3.64 16 5 C 0.08 0.58 5.23 37.16 0.19 0.77 16 6 C -0.14 -0.94 4.41 -27.88 -0.12 -1.07 16 7 C 0.52 4.94 7.70 -10.98 -0.08 4.86 16 8 O -0.54 -6.89 15.39 5.56 0.09 -6.81 16 9 N -0.61 -5.50 2.94 -172.19 -0.51 -6.01 16 10 C 0.09 0.64 6.53 -3.37 -0.02 0.62 16 11 C 0.09 0.85 6.52 -3.37 -0.02 0.83 16 12 N -0.62 -8.04 2.95 -172.19 -0.51 -8.55 16 13 C 0.54 9.54 7.72 -10.99 -0.08 9.46 16 14 O -0.51 -11.19 15.27 5.55 0.08 -11.11 16 15 C -0.15 -2.88 4.50 36.01 0.16 -2.72 16 16 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 17 C -0.54 -14.82 9.50 30.94 0.29 -14.53 16 18 H 0.07 1.89 7.80 -52.49 -0.41 1.48 16 19 C 0.07 2.07 5.49 -17.44 -0.10 1.97 16 20 N -0.87 -25.68 13.22 55.49 0.73 -24.94 16 21 Si 0.92 20.91 29.55 -169.99 -5.02 15.89 16 22 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 24 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16 25 C 0.10 1.15 6.60 -3.58 -0.02 1.13 16 26 C 0.10 0.98 6.59 -3.58 -0.02 0.96 16 27 H 0.22 0.66 7.80 -54.10 -0.42 0.24 16 28 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 31 H 0.06 0.46 8.10 -51.93 -0.42 0.04 16 32 H 0.10 0.58 7.90 -51.93 -0.41 0.17 16 33 H 0.11 0.58 7.73 -51.93 -0.40 0.17 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.45 5.91 -51.93 -0.31 0.14 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.91 5.91 -51.93 -0.31 0.60 16 38 H 0.09 1.54 7.72 -51.92 -0.40 1.14 16 39 H 0.09 1.57 7.91 -51.91 -0.41 1.16 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 41 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 42 H 0.11 1.37 6.99 -51.93 -0.36 1.01 16 43 H 0.10 1.06 6.99 -51.93 -0.36 0.69 16 44 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 387.73 15.07 5.84 5.84 Total: -1.00 -36.76 387.73 -7.72 -44.49 By element: Atomic # 1 Polarization: 3.93 SS G_CDS: -6.31 Total: -2.38 kcal Atomic # 6 Polarization: 0.56 SS G_CDS: 0.45 Total: 1.02 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: -0.28 Total: -39.50 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.19 Total: -21.55 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -36.76 -7.72 -44.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736632453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.542 kcal (2) G-P(sol) polarization free energy of solvation -36.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.306 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds