Wall clock time and date at job start Tue Mar 31 2020 23:53:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 O 1.42899 * 109.47044 * 327.60747 * 3 2 1 5 5 C 1.42905 * 113.99778 * 179.97438 * 4 3 2 6 6 C 1.52999 * 109.46728 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46953 * 180.02562 * 6 5 4 8 8 O 1.21279 * 119.99692 * 0.02562 * 7 6 5 9 9 N 1.34777 * 120.00146 * 180.02562 * 7 6 5 10 10 C 1.46964 * 120.59098 * 359.71704 * 9 7 6 11 11 C 1.53810 * 108.39454 * 124.76573 * 10 9 7 12 12 N 1.46963 * 108.58476 * 49.63232 * 11 10 9 13 13 C 1.34777 * 120.59341 * 124.62361 * 12 11 10 14 14 O 1.21283 * 119.99732 * 180.02562 * 13 12 11 15 15 C 1.50699 * 119.99809 * 0.02833 * 13 12 11 16 16 S 1.81001 * 109.46912 * 179.97438 * 15 13 12 17 17 C 1.76200 * 100.00214 * 180.02562 * 16 15 13 18 18 H 1.08002 * 119.99510 * 359.97438 * 17 16 15 19 19 C 1.38794 * 120.00051 * 180.02562 * 17 16 15 20 20 N 1.31624 * 120.00375 * 359.97438 * 19 17 16 21 21 Si 1.86806 * 119.99656 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47082 * 90.00022 * 21 19 17 23 23 H 1.48502 * 109.46763 * 209.99767 * 21 19 17 24 24 H 1.48495 * 109.47186 * 329.99282 * 21 19 17 25 25 C 1.46965 * 118.81298 * 304.65087 * 12 11 10 26 26 C 1.46963 * 120.59386 * 180.02562 * 9 7 6 27 27 H 4.38443 * 5.44458 * 180.02562 * 4 1 2 28 28 H 1.08997 * 109.47005 * 207.60807 * 3 2 1 29 29 H 1.08997 * 109.46973 * 87.61000 * 3 2 1 30 30 H 1.09000 * 109.47187 * 300.00233 * 5 4 3 31 31 H 1.09001 * 109.46558 * 60.00281 * 5 4 3 32 32 H 1.09000 * 109.47486 * 300.00062 * 6 5 4 33 33 H 1.09001 * 109.47362 * 60.00784 * 6 5 4 34 34 H 1.09007 * 109.60758 * 244.54076 * 10 9 7 35 35 H 1.08995 * 109.61269 * 5.05699 * 10 9 7 36 36 H 1.09006 * 109.73960 * 289.84025 * 11 10 9 37 37 H 1.08998 * 109.67495 * 169.39121 * 11 10 9 38 38 H 1.08995 * 109.47570 * 299.99477 * 15 13 12 39 39 H 1.09001 * 109.47599 * 59.99842 * 15 13 12 40 40 H 0.97004 * 120.00194 * 180.02562 * 20 19 17 41 41 H 1.09001 * 109.60777 * 295.48035 * 25 12 11 42 42 H 1.08997 * 109.60914 * 174.96922 * 25 12 11 43 43 H 1.09005 * 109.60869 * 354.94635 * 26 9 7 44 44 H 1.08994 * 109.61102 * 115.28296 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 8 3.1228 -1.1368 0.7218 5 6 4.5474 -1.2317 0.7817 6 6 4.9424 -2.4794 1.5742 7 6 6.4448 -2.5792 1.6380 8 8 7.1319 -1.7352 1.1027 9 7 7.0249 -3.6063 2.2899 10 6 6.2049 -4.6329 2.9484 11 6 6.6197 -6.0096 2.4020 12 7 8.0835 -6.1197 2.4722 13 6 8.6636 -7.1463 3.1250 14 8 9.8727 -7.2264 3.1766 15 6 7.8099 -8.1947 3.7905 16 16 8.8743 -9.4304 4.5755 17 6 7.6509 -10.5013 5.2544 18 1 6.6028 -10.2811 5.1144 19 6 8.0340 -11.6272 5.9699 20 7 9.3112 -11.8953 6.1409 21 14 6.7368 -12.7622 6.6902 22 1 6.3937 -13.8137 5.6993 23 1 7.2653 -13.3980 7.9238 24 1 5.5203 -11.9771 7.0203 25 6 8.9035 -5.0901 1.8185 26 6 8.4887 -3.7162 2.3607 27 1 -1.0498 -0.0004 0.0000 28 1 3.0089 0.9115 0.4762 29 1 3.0093 -0.0420 -1.0267 30 1 4.9499 -1.3002 -0.2290 31 1 4.9501 -0.3464 1.2739 32 1 4.5400 -2.4104 2.5849 33 1 4.5398 -3.3649 1.0824 34 1 6.3710 -4.5986 4.0252 35 1 5.1517 -4.4540 2.7322 36 1 6.2947 -6.1077 1.3661 37 1 6.1643 -6.7958 3.0041 38 1 7.1801 -7.7247 4.5459 39 1 7.1811 -8.6793 3.0436 40 1 9.5790 -12.6824 6.6407 41 1 8.7412 -5.1227 0.7412 42 1 9.9564 -5.2672 2.0379 43 1 8.9441 -2.9316 1.7563 44 1 8.8135 -3.6151 3.3962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001736632453.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:53:51 Heat of formation + Delta-G solvation = -72.195908 kcal Electronic energy + Delta-G solvation = -26081.212139 eV Core-core repulsion = 22126.205913 eV Total energy + Delta-G solvation = -3955.006226 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.63044 -40.54629 -39.08222 -38.04509 -35.18854 -34.56299 -34.47697 -33.36147 -32.07970 -30.77890 -28.71607 -27.84686 -27.58425 -25.29505 -24.56112 -23.27303 -21.22427 -20.04182 -19.54053 -19.14521 -18.59704 -17.84099 -17.49011 -17.26593 -17.01832 -16.85868 -16.75835 -16.67514 -16.42472 -15.89880 -15.74475 -15.09701 -14.89085 -14.79594 -14.56182 -14.48814 -14.01766 -13.71613 -13.47868 -13.37143 -13.15159 -12.87799 -12.76994 -12.69565 -12.63506 -12.56224 -12.41827 -12.31090 -11.69887 -11.52773 -11.44710 -11.12455 -10.97766 -10.92028 -10.56903 -10.37662 -10.22855 -9.43993 -8.65231 -8.32642 -6.10751 1.24491 1.40330 1.44267 1.46471 1.48060 1.57069 1.59724 1.81506 1.82940 2.14922 2.29101 2.87670 3.01977 3.24950 3.45890 3.61910 3.64052 3.75253 3.91964 4.03538 4.11192 4.13922 4.18172 4.23853 4.30524 4.34667 4.43148 4.45288 4.47047 4.55362 4.64859 4.66833 4.76988 4.80420 4.83214 4.94530 5.04224 5.31847 5.43307 5.44337 6.06682 6.16252 6.22041 6.31305 6.60413 7.02090 7.08936 7.10347 8.76404 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.001958 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.832987 B =14299.725133 C =16002.699754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.238 4.238 3 C 0.168 3.832 4 O -0.399 6.399 5 C 0.079 3.921 6 C -0.133 4.133 7 C 0.523 3.477 8 O -0.580 6.580 9 N -0.610 5.610 10 C 0.091 3.909 11 C 0.084 3.916 12 N -0.609 5.609 13 C 0.535 3.465 14 O -0.565 6.565 15 C -0.124 4.124 16 S -0.156 6.156 17 C -0.543 4.543 18 H 0.086 0.914 19 C 0.013 3.987 20 N -0.912 5.912 21 Si 0.997 3.003 22 H -0.269 1.269 23 H -0.281 1.281 24 H -0.255 1.255 25 C 0.103 3.897 26 C 0.106 3.894 27 H 0.251 0.749 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.123 0.877 33 H 0.126 0.874 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.095 0.905 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.111 0.889 40 H 0.270 0.730 41 H 0.082 0.918 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.810 23.174 -11.610 31.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.238 4.238 3 C 0.093 3.907 4 O -0.320 6.320 5 C 0.002 3.998 6 C -0.173 4.173 7 C 0.313 3.687 8 O -0.460 6.460 9 N -0.343 5.343 10 C -0.032 4.032 11 C -0.038 4.038 12 N -0.344 5.344 13 C 0.323 3.677 14 O -0.443 6.443 15 C -0.274 4.274 16 S 0.071 5.929 17 C -0.691 4.691 18 H 0.105 0.895 19 C -0.192 4.192 20 N -0.549 5.549 21 Si 0.819 3.181 22 H -0.194 1.194 23 H -0.206 1.206 24 H -0.179 1.179 25 C -0.020 4.020 26 C -0.018 4.018 27 H 0.268 0.732 28 H 0.105 0.895 29 H 0.105 0.895 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.141 0.859 33 H 0.144 0.856 34 H 0.101 0.899 35 H 0.155 0.845 36 H 0.113 0.887 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.079 0.921 41 H 0.100 0.900 42 H 0.105 0.895 43 H 0.119 0.881 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -15.652 23.267 -11.664 30.371 hybrid contribution -1.272 -0.623 0.346 1.458 sum -16.924 22.645 -11.318 30.452 Atomic orbital electron populations 1.25855 0.96867 0.96902 0.98411 1.23106 0.94910 1.03252 1.02560 1.19223 0.84433 0.89493 0.97541 1.87828 1.21881 1.46370 1.75894 1.22131 0.79552 0.97833 1.00236 1.21500 0.90104 1.00808 1.04870 1.20840 0.91126 0.80055 0.76673 1.90703 1.66369 1.41336 1.47621 1.48117 1.06861 1.25578 1.53697 1.22529 0.97303 0.85364 0.97963 1.22561 0.78188 0.98895 1.04203 1.48043 1.08330 1.24266 1.53774 1.20213 0.87873 0.81999 0.77631 1.90690 1.16420 1.76282 1.60916 1.23374 1.02245 0.98412 1.03418 1.85677 1.13408 1.25589 1.68236 1.23201 0.94337 1.11802 1.39713 0.89547 1.26120 0.98359 0.98865 0.95854 1.70187 1.17284 1.27522 1.39891 0.84967 0.77855 0.77738 0.77517 1.19447 1.20626 1.17864 1.21954 0.96692 0.86124 0.97274 1.21876 0.80652 0.96936 1.02303 0.73234 0.89499 0.89478 0.92341 0.92447 0.85889 0.85620 0.89888 0.84516 0.88713 0.86937 0.86767 0.87076 0.92097 0.90022 0.89531 0.88057 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.87 19.25 74.32 1.43 -0.44 16 2 C -0.24 -3.55 13.73 31.13 0.43 -3.12 16 3 C 0.17 2.10 6.41 70.18 0.45 2.55 16 4 O -0.40 -6.07 10.30 -148.98 -1.53 -7.60 16 5 C 0.08 1.03 5.23 71.98 0.38 1.41 16 6 C -0.13 -1.36 4.41 29.85 0.13 -1.23 16 7 C 0.52 8.68 7.70 87.66 0.67 9.35 16 8 O -0.58 -14.09 15.39 -3.03 -0.05 -14.14 16 9 N -0.61 -9.43 2.94 -817.08 -2.40 -11.84 16 10 C 0.09 0.96 6.53 86.56 0.57 1.53 16 11 C 0.08 1.22 6.52 86.56 0.56 1.78 16 12 N -0.61 -14.74 2.95 -817.08 -2.41 -17.15 16 13 C 0.53 18.83 7.72 87.66 0.68 19.51 16 14 O -0.56 -25.50 15.27 -3.04 -0.05 -25.55 16 15 C -0.12 -4.54 4.50 71.24 0.32 -4.22 16 16 S -0.16 -8.42 20.57 -56.49 -1.16 -9.58 16 17 C -0.54 -29.88 9.50 67.95 0.65 -29.23 16 18 H 0.09 4.34 7.80 -2.91 -0.02 4.31 16 19 C 0.01 0.70 5.49 84.86 0.47 1.17 16 20 N -0.91 -55.22 13.22 21.65 0.29 -54.94 16 21 Si 1.00 42.36 29.55 68.60 2.03 44.39 16 22 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 23 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 24 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 25 C 0.10 2.28 6.60 86.43 0.57 2.85 16 26 C 0.11 2.02 6.59 86.43 0.57 2.59 16 27 H 0.25 0.80 7.80 -4.43 -0.03 0.77 16 28 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.80 8.10 -2.39 -0.02 0.78 16 31 H 0.06 0.79 8.10 -2.39 -0.02 0.77 16 32 H 0.12 0.86 7.90 -2.39 -0.02 0.84 16 33 H 0.13 0.82 7.73 -2.39 -0.02 0.80 16 34 H 0.08 0.94 8.14 -2.38 -0.02 0.92 16 35 H 0.14 0.49 5.91 -2.39 -0.01 0.48 16 36 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.11 1.50 5.91 -2.39 -0.01 1.48 16 38 H 0.11 3.65 7.72 -2.40 -0.02 3.63 16 39 H 0.11 3.62 7.91 -2.40 -0.02 3.61 16 40 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 41 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 42 H 0.09 2.31 6.99 -2.39 -0.02 2.29 16 43 H 0.10 2.02 6.99 -2.38 -0.02 2.01 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 Total: -1.00 -83.35 387.73 3.58 -79.77 By element: Atomic # 1 Polarization: 11.14 SS G_CDS: 1.00 Total: 12.14 kcal Atomic # 6 Polarization: -3.38 SS G_CDS: 7.87 Total: 4.49 kcal Atomic # 7 Polarization: -79.39 SS G_CDS: -4.52 Total: -83.92 kcal Atomic # 8 Polarization: -45.66 SS G_CDS: -1.63 Total: -47.29 kcal Atomic # 14 Polarization: 42.36 SS G_CDS: 2.03 Total: 44.39 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.16 Total: -9.58 kcal Total: -83.35 3.58 -79.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001736632453.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.570 kcal (2) G-P(sol) polarization free energy of solvation -83.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds