Wall clock time and date at job start Wed Apr 1 2020 00:19:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50695 * 109.47196 * 64.99596 * 4 2 1 6 6 O 1.21283 * 120.00019 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00071 * 179.97438 * 5 4 2 8 8 C 1.46493 * 120.00359 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47485 * 180.02562 * 8 7 5 10 10 N 1.46501 * 109.47377 * 179.97438 * 9 8 7 11 11 C 1.34778 * 120.00251 * 179.97438 * 10 9 8 12 12 O 1.21276 * 119.99552 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00071 * 180.02562 * 11 10 9 14 14 S 1.80999 * 109.47281 * 180.02562 * 13 11 10 15 15 C 1.76194 * 100.00206 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00179 * 0.02562 * 15 14 13 17 17 C 1.38807 * 119.99993 * 179.97438 * 15 14 13 18 18 N 1.31631 * 119.99889 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99882 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46863 * 89.99721 * 19 17 15 21 21 H 1.48499 * 109.47018 * 209.99680 * 19 17 15 22 22 H 1.48503 * 109.47072 * 329.99875 * 19 17 15 23 23 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 24 24 C 1.34516 * 125.79121 * 239.71792 * 23 2 1 25 25 C 1.41382 * 106.84005 * 179.88815 * 24 23 2 26 26 C 1.34522 * 106.84117 * 0.37285 * 25 24 23 27 27 O 1.34303 * 108.41811 * 359.77202 * 26 25 24 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 32 32 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 33 33 H 0.97006 * 119.99703 * 0.02562 * 7 5 4 34 34 H 1.09007 * 109.47087 * 300.00348 * 8 7 5 35 35 H 1.09006 * 109.47414 * 60.00171 * 8 7 5 36 36 H 1.08998 * 109.47295 * 299.99958 * 9 8 7 37 37 H 1.08997 * 109.46920 * 60.00251 * 9 8 7 38 38 H 0.97006 * 120.00046 * 0.02562 * 10 9 8 39 39 H 1.08998 * 109.47094 * 300.00402 * 13 11 10 40 40 H 1.08997 * 109.46850 * 60.00529 * 13 11 10 41 41 H 0.97001 * 119.99613 * 180.02562 * 18 17 15 42 42 H 1.08000 * 126.57684 * 0.02562 * 24 23 2 43 43 H 1.07998 * 126.58222 * 180.16731 * 25 24 23 44 44 H 1.07995 * 125.78869 * 179.75100 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9853 -0.3912 -3.7002 8 6 1.5982 0.3657 -4.8932 9 6 2.1080 -0.3555 -6.1425 10 7 1.7204 0.4011 -7.3356 11 6 2.0643 -0.0473 -8.5592 12 8 2.6943 -1.0774 -8.6725 13 6 1.6660 0.7313 -9.7864 14 16 2.2691 -0.1220 -11.2644 15 6 1.6808 0.9743 -12.5121 16 1 1.1294 1.8608 -12.2358 17 6 1.9271 0.6990 -13.8501 18 7 1.4881 1.5183 -14.7822 19 14 2.8815 -0.8340 -14.3280 20 1 1.9374 -1.9630 -14.5262 21 1 3.6235 -0.5820 -15.5894 22 1 3.8422 -1.1757 -13.2483 23 6 2.0324 -0.7104 1.2304 24 6 2.8134 -0.1735 2.1850 25 6 3.0388 -1.1851 3.1467 26 6 2.3888 -2.2821 2.7180 27 8 1.7811 -1.9887 1.5569 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 3.1264 -0.7994 -1.2057 32 1 1.6055 -1.7197 -1.2953 33 1 2.4892 -1.2151 -3.7908 34 1 0.5118 0.4439 -4.9372 35 1 2.0328 1.3643 -4.8470 36 1 3.1943 -0.4341 -6.0988 37 1 1.6730 -1.3539 -6.1886 38 1 1.2168 1.2252 -7.2450 39 1 0.5797 0.8096 -9.8304 40 1 2.1007 1.7297 -9.7402 41 1 1.6599 1.3257 -15.7172 42 1 3.1933 0.8370 2.2127 43 1 3.6235 -1.0955 4.0502 44 1 2.3608 -3.2369 3.2220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001740481118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:15 Heat of formation + Delta-G solvation = -70.831803 kcal Electronic energy + Delta-G solvation = -25040.058861 eV Core-core repulsion = 21085.111787 eV Total energy + Delta-G solvation = -3954.947074 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.01240 -40.33240 -39.34692 -36.41959 -35.37994 -34.10293 -33.34602 -32.45923 -30.74116 -29.49433 -28.70003 -27.40258 -25.63205 -23.79197 -22.76337 -22.17506 -21.21228 -20.48003 -20.21442 -18.07675 -17.90944 -17.25751 -16.75357 -16.43085 -16.39813 -15.99407 -15.75610 -15.54798 -15.01384 -14.94907 -14.80431 -14.30869 -13.84809 -13.65539 -13.54492 -13.34697 -13.24474 -13.08220 -12.90703 -12.81917 -12.48930 -12.14379 -11.94376 -11.79889 -11.72879 -11.46338 -11.29248 -11.02833 -10.65008 -10.34115 -10.26172 -9.88557 -9.64342 -9.54473 -9.14395 -9.01738 -8.89377 -8.53756 -6.95019 -6.30892 -4.03179 1.29925 2.18378 2.19823 2.41771 2.58166 2.85687 2.87588 3.30762 3.36768 3.48359 3.65275 4.07110 4.19839 4.30682 4.31845 4.44090 4.56001 4.61637 4.70515 4.71931 4.74595 4.90943 5.08206 5.08528 5.12183 5.14223 5.24142 5.36668 5.43398 5.53041 5.53510 5.61759 5.66005 5.68137 5.72632 5.85398 5.97329 6.01551 6.06808 6.36187 6.71882 6.98918 7.46877 7.75939 7.92095 8.37355 8.39886 9.15133 10.78330 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.041058 B = 0.001364 C = 0.001336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.796196 B =20522.638871 C =20948.239700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.009 3.991 3 H 0.109 0.891 4 C -0.139 4.139 5 C 0.518 3.482 6 O -0.534 6.534 7 N -0.727 5.727 8 C 0.108 3.892 9 C 0.111 3.889 10 N -0.735 5.735 11 C 0.533 3.467 12 O -0.518 6.518 13 C -0.124 4.124 14 S -0.141 6.141 15 C -0.523 4.523 16 H 0.089 0.911 17 C 0.096 3.904 18 N -0.880 5.880 19 Si 0.857 3.143 20 H -0.267 1.267 21 H -0.274 1.274 22 H -0.235 1.235 23 C -0.005 4.005 24 C -0.210 4.210 25 C -0.213 4.213 26 C -0.045 4.045 27 O -0.174 6.174 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.101 0.899 33 H 0.405 0.595 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.403 0.597 39 H 0.099 0.901 40 H 0.099 0.901 41 H 0.271 0.729 42 H 0.148 0.852 43 H 0.147 0.853 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.111 -4.982 36.032 36.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.010 4.010 3 H 0.127 0.873 4 C -0.179 4.179 5 C 0.304 3.696 6 O -0.411 6.411 7 N -0.380 5.380 8 C -0.016 4.016 9 C -0.014 4.014 10 N -0.390 5.390 11 C 0.319 3.681 12 O -0.392 6.392 13 C -0.275 4.275 14 S 0.085 5.915 15 C -0.670 4.670 16 H 0.107 0.893 17 C -0.112 4.112 18 N -0.516 5.516 19 Si 0.681 3.319 20 H -0.192 1.192 21 H -0.199 1.199 22 H -0.159 1.159 23 C -0.055 4.055 24 C -0.229 4.229 25 C -0.232 4.232 26 C -0.112 4.112 27 O -0.070 6.070 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.104 0.896 31 H 0.118 0.882 32 H 0.119 0.881 33 H 0.239 0.761 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.237 0.763 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.165 0.835 43 H 0.165 0.835 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 1.515 -6.105 35.538 36.090 hybrid contribution -0.170 0.694 -0.061 0.717 sum 1.346 -5.411 35.477 35.912 Atomic orbital electron populations 1.21992 0.92905 1.02443 1.03848 1.19509 0.97298 0.97954 0.86259 0.87335 1.21771 1.03579 1.00672 0.91862 1.20535 0.79050 0.85645 0.84352 1.90707 1.39469 1.24380 1.86506 1.45822 1.58397 1.28162 1.05634 1.21462 1.01047 0.95828 0.83270 1.21330 1.00797 0.95844 0.83435 1.45766 1.59796 1.28343 1.05139 1.20298 0.78604 0.85445 0.83729 1.90705 1.38460 1.23878 1.86158 1.23277 1.05221 1.03040 0.95965 1.84784 1.74152 1.35854 0.96727 1.22315 1.41580 1.11211 0.91910 0.89338 1.24711 0.94582 0.96706 0.95247 1.69939 1.44372 1.36552 1.00753 0.86736 0.81782 0.83263 0.80069 1.19196 1.19907 1.15949 1.22436 1.01295 0.82703 0.99072 1.21646 1.03894 1.01400 0.95957 1.21852 1.05488 0.93608 1.02299 1.24054 0.99218 1.00953 0.86979 1.84004 1.59485 1.28044 1.35443 0.92278 0.92604 0.89606 0.88223 0.88067 0.76073 0.90539 0.90532 0.90894 0.90895 0.76291 0.88318 0.88276 0.91914 0.83463 0.83491 0.78145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.92 37.16 0.33 -0.79 16 2 C 0.01 0.06 2.44 -91.77 -0.22 -0.17 16 3 H 0.11 0.74 7.91 -51.93 -0.41 0.33 16 4 C -0.14 -0.76 5.16 -27.88 -0.14 -0.90 16 5 C 0.52 3.98 7.55 -10.99 -0.08 3.90 16 6 O -0.53 -5.91 13.97 5.56 0.08 -5.83 16 7 N -0.73 -4.62 5.56 -60.30 -0.33 -4.95 16 8 C 0.11 0.81 5.79 -4.05 -0.02 0.78 16 9 C 0.11 1.02 5.79 -4.04 -0.02 0.99 16 10 N -0.73 -8.38 5.56 -60.30 -0.33 -8.71 16 11 C 0.53 8.92 7.85 -10.99 -0.09 8.84 16 12 O -0.52 -10.63 15.86 5.56 0.09 -10.54 16 13 C -0.12 -2.31 6.16 36.00 0.22 -2.09 16 14 S -0.14 -3.52 18.55 -107.50 -1.99 -5.51 16 15 C -0.52 -14.89 10.04 30.94 0.31 -14.58 16 16 H 0.09 2.63 8.03 -52.49 -0.42 2.21 16 17 C 0.10 2.79 5.50 -17.43 -0.10 2.70 16 18 N -0.88 -26.36 13.97 55.49 0.78 -25.58 16 19 Si 0.86 21.55 27.74 -169.99 -4.72 16.83 16 20 H -0.27 -6.64 7.11 56.52 0.40 -6.23 16 21 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.24 -5.90 6.74 56.52 0.38 -5.52 16 23 C 0.00 -0.04 5.83 -35.63 -0.21 -0.24 16 24 C -0.21 -1.49 10.78 -39.70 -0.43 -1.92 16 25 C -0.21 -1.34 10.91 -39.70 -0.43 -1.77 16 26 C -0.04 -0.26 12.09 29.42 0.36 0.09 16 27 O -0.17 -1.34 10.65 5.70 0.06 -1.28 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.75 5.95 -51.93 -0.31 0.44 16 31 H 0.10 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.40 1.65 8.47 -40.82 -0.35 1.30 16 34 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 36 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.40 3.50 8.47 -40.82 -0.35 3.16 16 39 H 0.10 1.70 8.14 -51.92 -0.42 1.28 16 40 H 0.10 1.71 8.14 -51.92 -0.42 1.28 16 41 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 43 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 44 H 0.20 0.47 8.06 -52.49 -0.42 0.04 16 LS Contribution 390.33 15.07 5.88 5.88 Total: -1.00 -36.55 390.33 -7.51 -44.06 By element: Atomic # 1 Polarization: 7.29 SS G_CDS: -6.49 Total: 0.80 kcal Atomic # 6 Polarization: -4.64 SS G_CDS: -0.53 Total: -5.17 kcal Atomic # 7 Polarization: -39.36 SS G_CDS: 0.11 Total: -39.25 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: 0.23 Total: -17.65 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.72 Total: 16.83 kcal Atomic # 16 Polarization: -3.52 SS G_CDS: -1.99 Total: -5.51 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -36.55 -7.51 -44.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740481118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.772 kcal (2) G-P(sol) polarization free energy of solvation -36.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds