Wall clock time and date at job start Wed Apr 1 2020 00:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 C 1.50695 * 109.47196 * 64.99596 * 4 2 1 6 6 O 1.21283 * 120.00019 * 0.02562 * 5 4 2 7 7 N 1.34778 * 120.00071 * 179.97438 * 5 4 2 8 8 C 1.46493 * 120.00359 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47485 * 180.02562 * 8 7 5 10 10 N 1.46501 * 109.47377 * 179.97438 * 9 8 7 11 11 C 1.34778 * 120.00251 * 179.97438 * 10 9 8 12 12 O 1.21276 * 119.99552 * 0.02562 * 11 10 9 13 13 C 1.50695 * 120.00071 * 180.02562 * 11 10 9 14 14 S 1.80999 * 109.47281 * 180.02562 * 13 11 10 15 15 C 1.76194 * 100.00206 * 180.02562 * 14 13 11 16 16 H 1.08001 * 120.00179 * 0.02562 * 15 14 13 17 17 C 1.38807 * 119.99993 * 179.97438 * 15 14 13 18 18 N 1.31631 * 119.99889 * 180.02562 * 17 15 14 19 19 Si 1.86801 * 119.99882 * 0.02562 * 17 15 14 20 20 H 1.48502 * 109.46863 * 89.99721 * 19 17 15 21 21 H 1.48499 * 109.47018 * 209.99680 * 19 17 15 22 22 H 1.48503 * 109.47072 * 329.99875 * 19 17 15 23 23 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 24 24 C 1.34516 * 125.79121 * 239.71792 * 23 2 1 25 25 C 1.41382 * 106.84005 * 179.88815 * 24 23 2 26 26 C 1.34522 * 106.84117 * 0.37285 * 25 24 23 27 27 O 1.34303 * 108.41811 * 359.77202 * 26 25 24 28 28 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 29 29 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 31 31 H 1.09007 * 109.47135 * 184.99942 * 4 2 1 32 32 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 33 33 H 0.97006 * 119.99703 * 0.02562 * 7 5 4 34 34 H 1.09007 * 109.47087 * 300.00348 * 8 7 5 35 35 H 1.09006 * 109.47414 * 60.00171 * 8 7 5 36 36 H 1.08998 * 109.47295 * 299.99958 * 9 8 7 37 37 H 1.08997 * 109.46920 * 60.00251 * 9 8 7 38 38 H 0.97006 * 120.00046 * 0.02562 * 10 9 8 39 39 H 1.08998 * 109.47094 * 300.00402 * 13 11 10 40 40 H 1.08997 * 109.46850 * 60.00529 * 13 11 10 41 41 H 0.97001 * 119.99613 * 180.02562 * 18 17 15 42 42 H 1.08000 * 126.57684 * 0.02562 * 24 23 2 43 43 H 1.07998 * 126.58222 * 180.16731 * 25 24 23 44 44 H 1.07995 * 125.78869 * 179.75100 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 6 1.6413 0.0571 -2.4766 6 8 1.0116 1.0875 -2.3632 7 7 1.9853 -0.3912 -3.7002 8 6 1.5982 0.3657 -4.8932 9 6 2.1080 -0.3555 -6.1425 10 7 1.7204 0.4011 -7.3356 11 6 2.0643 -0.0473 -8.5592 12 8 2.6943 -1.0774 -8.6725 13 6 1.6660 0.7313 -9.7864 14 16 2.2691 -0.1220 -11.2644 15 6 1.6808 0.9743 -12.5121 16 1 1.1294 1.8608 -12.2358 17 6 1.9271 0.6990 -13.8501 18 7 1.4881 1.5183 -14.7822 19 14 2.8815 -0.8340 -14.3280 20 1 1.9374 -1.9630 -14.5262 21 1 3.6235 -0.5820 -15.5894 22 1 3.8422 -1.1757 -13.2483 23 6 2.0324 -0.7104 1.2304 24 6 2.8134 -0.1735 2.1850 25 6 3.0388 -1.1851 3.1467 26 6 2.3888 -2.2821 2.7180 27 8 1.7811 -1.9887 1.5569 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 -0.8900 31 1 3.1264 -0.7994 -1.2057 32 1 1.6055 -1.7197 -1.2953 33 1 2.4892 -1.2151 -3.7908 34 1 0.5118 0.4439 -4.9372 35 1 2.0328 1.3643 -4.8470 36 1 3.1943 -0.4341 -6.0988 37 1 1.6730 -1.3539 -6.1886 38 1 1.2168 1.2252 -7.2450 39 1 0.5797 0.8096 -9.8304 40 1 2.1007 1.7297 -9.7402 41 1 1.6599 1.3257 -15.7172 42 1 3.1933 0.8370 2.2127 43 1 3.6235 -1.0955 4.0502 44 1 2.3608 -3.2369 3.2220 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001740481118.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:19:14 Heat of formation + Delta-G solvation = -97.512702 kcal Electronic energy + Delta-G solvation = -25041.215832 eV Core-core repulsion = 21085.111787 eV Total energy + Delta-G solvation = -3956.104045 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.48714 -41.01777 -40.56253 -37.18869 -36.02295 -35.03346 -34.66360 -33.81978 -31.83645 -30.26426 -29.38487 -28.19179 -27.79616 -24.42682 -23.41368 -22.65936 -22.08994 -21.40786 -20.73723 -19.91560 -18.52636 -18.06568 -17.77349 -17.18184 -17.15769 -16.99561 -16.85635 -16.69559 -16.45590 -15.69435 -15.56355 -15.52307 -15.00654 -14.91540 -14.65764 -14.28928 -14.07571 -13.79844 -13.70985 -13.50539 -13.34324 -13.33370 -13.02157 -12.89691 -12.84226 -12.62328 -12.43032 -12.27770 -11.96865 -11.86303 -11.16447 -11.13684 -10.85594 -10.82002 -10.53481 -10.24774 -10.10996 -9.36142 -8.98906 -8.50950 -6.21857 0.82537 0.98491 1.32388 1.45920 1.53610 1.53992 1.60861 1.72257 1.89177 2.13322 2.25528 2.52242 2.74960 2.87550 3.55738 3.65257 3.71066 3.90695 3.98103 4.03317 4.09674 4.16894 4.24901 4.32449 4.40189 4.43304 4.49077 4.64453 4.69223 4.83748 4.85384 4.91443 4.95297 5.05476 5.14775 5.20437 5.24692 5.35032 5.45712 5.62983 5.71157 6.12212 6.24622 6.39034 6.49099 6.94261 7.14347 7.20714 8.61473 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.041058 B = 0.001364 C = 0.001336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.796196 B =20522.638871 C =20948.239700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.011 3.989 3 H 0.103 0.897 4 C -0.131 4.131 5 C 0.518 3.482 6 O -0.570 6.570 7 N -0.719 5.719 8 C 0.119 3.881 9 C 0.115 3.885 10 N -0.711 5.711 11 C 0.539 3.461 12 O -0.559 6.559 13 C -0.113 4.113 14 S -0.174 6.174 15 C -0.531 4.531 16 H 0.062 0.938 17 C 0.046 3.954 18 N -0.918 5.918 19 Si 0.915 3.085 20 H -0.262 1.262 21 H -0.260 1.260 22 H -0.236 1.236 23 C -0.016 4.016 24 C -0.223 4.223 25 C -0.229 4.229 26 C -0.045 4.045 27 O -0.187 6.187 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.418 0.582 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.419 0.581 39 H 0.115 0.885 40 H 0.115 0.885 41 H 0.277 0.723 42 H 0.154 0.846 43 H 0.163 0.837 44 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.793 -6.231 37.925 38.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.008 4.008 3 H 0.121 0.879 4 C -0.170 4.170 5 C 0.306 3.694 6 O -0.450 6.450 7 N -0.372 5.372 8 C -0.006 4.006 9 C -0.009 4.009 10 N -0.366 5.366 11 C 0.324 3.676 12 O -0.437 6.437 13 C -0.264 4.264 14 S 0.052 5.948 15 C -0.678 4.678 16 H 0.080 0.920 17 C -0.159 4.159 18 N -0.556 5.556 19 Si 0.737 3.263 20 H -0.187 1.187 21 H -0.184 1.184 22 H -0.159 1.159 23 C -0.066 4.066 24 C -0.242 4.242 25 C -0.248 4.248 26 C -0.112 4.112 27 O -0.084 6.084 28 H 0.075 0.925 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.255 0.745 34 H 0.094 0.906 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.093 0.907 38 H 0.256 0.744 39 H 0.133 0.867 40 H 0.133 0.867 41 H 0.086 0.914 42 H 0.172 0.828 43 H 0.181 0.819 44 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 2.189 -7.338 37.465 38.240 hybrid contribution -0.444 1.162 -0.464 1.327 sum 1.745 -6.176 37.001 37.554 Atomic orbital electron populations 1.21918 0.93590 1.02243 1.02937 1.19442 0.96673 0.97877 0.86814 0.87894 1.21746 1.04641 1.00574 0.90078 1.20882 0.78306 0.85212 0.85044 1.90700 1.41199 1.26075 1.87007 1.45735 1.58059 1.28455 1.04960 1.21280 1.00872 0.95626 0.82833 1.21406 1.00965 0.95737 0.82794 1.45512 1.58289 1.28638 1.04189 1.19880 0.78472 0.84686 0.84535 1.90697 1.40689 1.25556 1.86783 1.23279 1.06104 1.03210 0.93838 1.84675 1.74758 1.36344 0.98977 1.22480 1.41024 1.10972 0.93357 0.91986 1.25572 0.95501 0.99535 0.95333 1.70021 1.45791 1.38377 1.01376 0.85860 0.80639 0.79724 0.80102 1.18682 1.18420 1.15943 1.22481 1.01853 0.82876 0.99424 1.21925 1.03967 1.02079 0.96263 1.22155 1.06092 0.93600 1.02906 1.24743 0.98095 1.02102 0.86233 1.83996 1.59950 1.28136 1.36274 0.92529 0.92384 0.91091 0.86499 0.86763 0.74543 0.90634 0.90591 0.90726 0.90749 0.74414 0.86718 0.86679 0.91386 0.82790 0.81917 0.75056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 8.92 71.98 0.64 -1.50 16 2 C 0.01 0.13 2.44 -11.54 -0.03 0.11 16 3 H 0.10 1.39 7.91 -2.39 -0.02 1.37 16 4 C -0.13 -1.21 5.16 29.85 0.15 -1.06 16 5 C 0.52 7.21 7.55 87.66 0.66 7.87 16 6 O -0.57 -12.24 13.97 -3.04 -0.04 -12.28 16 7 N -0.72 -7.61 5.56 -463.07 -2.57 -10.18 16 8 C 0.12 1.51 5.79 86.38 0.50 2.01 16 9 C 0.12 1.84 5.79 86.38 0.50 2.34 16 10 N -0.71 -14.48 5.56 -463.08 -2.57 -17.05 16 11 C 0.54 17.05 7.85 87.66 0.69 17.74 16 12 O -0.56 -22.26 15.86 -3.02 -0.05 -22.30 16 13 C -0.11 -4.06 6.16 71.23 0.44 -3.62 16 14 S -0.17 -8.58 18.55 -56.49 -1.05 -9.62 16 15 C -0.53 -30.53 10.04 67.96 0.68 -29.85 16 16 H 0.06 3.77 8.03 -2.91 -0.02 3.74 16 17 C 0.05 2.67 5.50 84.86 0.47 3.14 16 18 N -0.92 -55.58 13.97 21.65 0.30 -55.27 16 19 Si 0.91 44.43 27.74 68.60 1.90 46.34 16 20 H -0.26 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.26 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.24 -11.37 6.74 99.48 0.67 -10.70 16 23 C -0.02 -0.22 5.83 24.83 0.14 -0.08 16 24 C -0.22 -2.97 10.78 22.19 0.24 -2.73 16 25 C -0.23 -2.53 10.91 22.19 0.24 -2.29 16 26 C -0.04 -0.44 12.09 66.97 0.81 0.37 16 27 O -0.19 -2.61 10.65 -2.50 -0.03 -2.64 16 28 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 1.25 5.95 -2.38 -0.01 1.23 16 31 H 0.12 0.71 8.14 -2.38 -0.02 0.69 16 32 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.42 2.34 8.47 -92.70 -0.79 1.55 16 34 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 35 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 36 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.42 6.09 8.47 -92.70 -0.79 5.30 16 39 H 0.11 3.75 8.14 -2.40 -0.02 3.73 16 40 H 0.12 3.77 8.14 -2.40 -0.02 3.75 16 41 H 0.28 15.49 8.31 -92.71 -0.77 14.72 16 42 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 43 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 44 H 0.23 0.46 8.06 -2.91 -0.02 0.43 16 Total: -1.00 -79.50 390.33 1.46 -78.04 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -0.58 Total: 12.53 kcal Atomic # 6 Polarization: -13.70 SS G_CDS: 6.14 Total: -7.56 kcal Atomic # 7 Polarization: -77.66 SS G_CDS: -4.84 Total: -82.50 kcal Atomic # 8 Polarization: -37.10 SS G_CDS: -0.12 Total: -37.22 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 1.90 Total: 46.34 kcal Atomic # 16 Polarization: -8.58 SS G_CDS: -1.05 Total: -9.62 kcal Total: -79.50 1.46 -78.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001740481118.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.472 kcal (2) G-P(sol) polarization free energy of solvation -79.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds